Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000008

Orthogroup ID

OG0005654

Physical Location & Seq

Genomic Coordinates Reverse (-)

40771 .. 43023

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RorugPtG0002200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2253 bp

ATGATTATTCGTTCGCCGGAACCAGAAGTTAAAATTTTGGTAGATAGGGATCCCGTAAAAACTTCTTTCGAGGAATGGGCCAGACCCGGTCATTTCTCAAGAACAATAGCTAAGGGGCCTGATACTACCACTTGGATCTGGAACCTACACGCTGATGCTCACGATTTCGATAGCCATACCAGTGATTTGGAGGAGATCTCTCGAAAAGTATTTAGTGCCCATTTTGGTCAACTCTCCATCATCTTTCTTTGGCTGAGTGGTATGTATTTCCACGGTGCTCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCTACTCACATTGGACCTAGTGCCCAGGTGGTTTGGCCAATAGTGGGTCAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATACAAATAACCTCTGGGTTTTTTCAGCTTTGGCGAGCAGGTGGAATAACTAGTGAATTACAACTCTATTGTACTGCAATTGGTGCATTGGTCTTTGCTGCCTTAATGCTTTTTGCGGGTTGGTTCCATTATCACAAAGCTGCTCCGAAATTGGCTTGGTTCCAAGATGTAGAATCTATGTTGAATCACCATTTAGCAGGCCTATTAGGCCTTGGGTCTCTTGGTTGGGCGGGGCATCAAGTACACGTATCGTTACCAATTAACCAATTTCTAAACGCTGGAGTAGATCCTAAAGAAATTCCACTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCTCAACTTTATCCCAGTTTTGCTGAGGGAGCGACCCCATTTTTCACCTTGAATTGGTCAAAATATGCGGAATTTCTTACTTTTCGTGGAGGATTAGATCCAGTAACTGGAGGTCTATGGCTGACCGATATTGCACACCATCATTTAGCTATTGCAATTCTTTTCCTGGTAGCGGGTCACATGTATAAGACCAATTGGGGCATTGGTCATGGTATAAAAGATATTTTAGAGGCTCATAAAGGCCCATTTACCGGCCAGGGCCATAAAGGCCTATATGAGATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGTTAGGATCTTTAACCATTATTGTAGCTCACCATATGTATGCGATGCCCCCTTATCCATATCTAGCTACTGACTATGGTACACAACTTTCATTGTTCACACATCATATGTGGATTGGTGGATTTCTCATAGTTGGTGCTGCTGCGCATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGTGTCCTTAGGCATCGCGATGCAATCATATCACATCTCAACTGGGTATGTATATTTTTAGGCTTTCACAGTTTTGGTTTGTATATTCATAATGATACCATGAGCGCGTTAGGGCGTCCCCAAGATATGTTTTCAGATACCGCTATACAATTACAGCCCGTCTTTGCTCAATGGATACAAAACACCCACGCTTTAGCACCCGGCGCAACGGCCCCTGGTGCAACAACAAGCACCAGTTTGACTTGGGGGGGTGGTGATTTAGTGGCAGTGGGCGGTAAAGTTGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTGGTACATCACATTCATGCATTTACAATTCATGTGACGGTATTGATACTCCTGAAAGGCGTTCTATTTGCTCGTAGTTCGCGTTTGATACCCGATAAAGCAAATCTTGGTTTTCGTTTTCCTTGTGATGGACCCGGAAGGGGGGGGACATGCCAAGTATCCGCTTGGGATCATGTCTTCTTAGGGCTATTCTGGATGTATAATGCAATTTCGGTAGTAATATTCCATTTCAGTTGGAAAATGCAATCAGATGTTTGGGGTAGTATAAGTGATCAAGGAGTGGTAACTCATATCACGGGAGGAAACTTTGCGCAGAGTTCCATTACTATTAATGGGTGGCTCCGCGATTTCTTATGGGCACAGGCATCCCAAGTAATTCAGTCCTACGGTTCTTCATTATCTGCATATGGCCTTTTTTTCCTAGGCGCCCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAGCGGACGTGGTTATTGGCAAGAACTTATTGAATCCATTGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGTATTGTCCAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCGTTCTTCTTAGCAAGAATTATTGCAGTAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004108 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009060 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016740 GO:0016746 GO:0016999 GO:0017076 GO:0017144 GO:0019752 GO:0030312 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036440 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046686 GO:0046872 GO:0046912 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071704 GO:0071944 GO:0072350 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00020 ko00630 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 map00020 map00630 map01100 map01110 map01120 map01130 map01200 map01210 map01230

Pfam Domains

Protein Families

Citrate_synt

Protein Analysis

750

Amino Acids

83.0

Weight (kDa)

6.67

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaA_PsaB	PF00223	32 - 744	0.0	Photosystem I psaA/psaB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44350 AT2G44350 AT2G44350 AT2G44350 AT3G60100 AT3G60100 AT3G60100
fragaria_vesca	FvH4_7g00080 FvH4_7g00080 FvH4_7g00080
malus_domestica	MD00G1055300.v1.1 MD02G1319300.v1.1
prunus_persica	Prupe.2G002900_v2.0.a1 Prupe.2G002900_v2.0.a1
pyrus_communis	pycom07g00060
rosa_chinensis	RchiOBHm_Chr1g0313271
rosa_laevigata	RLG00000030810
rosa_multiflora	Rmu_sc0000035.1_g000001 Rmu_sc0004761.1_g000015
rosa_roxburghii	Rroxscaffold_4G00332290
rosa_rugosa	RorugPtG0002200 RorugPtG0002300.1 RorugPtG0002400.1
rosa_samantha	Rh1AG002300 Rh1CG004400 Rh1CG006800 Rh1DG002200
rosa_wichuraiana	Rw1G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
Acc16I	TGCGCA	2 cut(s)	1212, 1905
Acc36I	ACCTGC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	2018
AccB7I	CCANNNNNTGG	3 cut(s)	848, 2100, 2214
AccII	CGCG	4 cut(s)	1293, 1382, 1675, 1938
AcoI	YGGCCR	2 cut(s)	347, 994
AcsI	RAATTY	4 cut(s)	33, 699, 716, 812
AcyI	GRCGYC	2 cut(s)	1390, 2019
AfaI	GTAC	4 cut(s)	475, 645, 1147, 1599
AflIII	ACRYGT	2 cut(s)	646, 921
AgsI	TTSAA	5 cut(s)	373, 586, 727, 793, 2090
AhlI	ACTAGT	1 cut(s)	452
AjiI	CACGTC	2 cut(s)	2066, 2168
AjnI	CCWGG	4 cut(s)	336, 906, 996, 1489
AluBI	AGCT	7 cut(s)	110, 430, 542, 890, 1064, 1094, 1133
AluI	AGCT	7 cut(s)	110, 430, 542, 890, 1064, 1094, 1133
Alw21I	GWGCWC	1 cut(s)	280
Alw26I	GTCTC	2 cut(s)	624, 1230
AlwNI	CAGNNNCTG	1 cut(s)	848
ApeKI	GCWGC	5 cut(s)	500, 542, 1205, 1208, 1217
ApoI	RAATTY	4 cut(s)	33, 699, 716, 812
AseI	ATTAAT	1 cut(s)	1923
AspA2I	CCTAGG	1 cut(s)	2014
AspLEI	GCGC	5 cut(s)	1213, 1382, 1481, 1906, 2021
AspS9I	GGNCC	7 cut(s)	78, 116, 326, 983, 1000, 1486, 1724
AsuC2I	CCSGG	3 cut(s)	87, 1476, 1728
AsuHPI	GGTGA	5 cut(s)	389, 581, 778, 1088, 1541
AvaII	GGWCC	2 cut(s)	326, 1724
AvrII	CCTAGG	1 cut(s)	2014
AxyI	CCTNAGG	1 cut(s)	1283
BaeGI	GKGCMC	3 cut(s)	220, 337, 1954
BalI	TGGCCA	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	2018
BanII	GRGCYC	1 cut(s)	2107
BbsI	GAAGAC	1 cut(s)	1762
Bbv12I	GWGCWC	1 cut(s)	280
BbvCI	CCTCAGC	1 cut(s)	765
BbvI	GCAGC	5 cut(s)	487, 529, 1192, 1195, 1229
BccI	CCATC	3 cut(s)	245, 888, 1715
BceAI	ACGGC	1 cut(s)	1500
BciT130I	CCWGG	4 cut(s)	338, 908, 998, 1491
BciVI	GTATCC	2 cut(s)	1443, 1762
BclI	TGATCA	1 cut(s)	1864
BcnI	CCSGG	3 cut(s)	87, 1476, 1728
BcoDI	GTCTC	2 cut(s)	624, 1230
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	6 cut(s)	330, 453, 1061, 1130, 2015, 2142
BfmI	CTRYAG	1 cut(s)	2172
BfoI	RGCGCY	1 cut(s)	2022
BfuAI	ACCTGC	1 cut(s)	431
BfuI	GTATCC	2 cut(s)	1443, 1762
BglI	GCCNNNNNGGC	2 cut(s)	609, 1008
BglII	AGATCT	1 cut(s)	195
BisI	GCNGC	5 cut(s)	501, 543, 1206, 1209, 1218
BlnI	CCTAGG	1 cut(s)	2014
BlsI	GCNGC	5 cut(s)	502, 544, 1207, 1210, 1219
Bme1390I	CCNGG	7 cut(s)	87, 338, 908, 998, 1476, 1491, 1728
Bme18I	GGWCC	2 cut(s)	326, 1724
BmgBI	CACGTC	2 cut(s)	2066, 2168
BmgT120I	GGNCC	7 cut(s)	78, 116, 326, 983, 1000, 1486, 1724
BmrFI	CCNGG	7 cut(s)	87, 338, 908, 998, 1476, 1491, 1728
BmrI	ACTGGG	2 cut(s)	750, 1327
BmsI	GCATC	6 cut(s)	145, 646, 1101, 1285, 1297, 1967
BmuI	ACTGGG	2 cut(s)	750, 1327
BpiI	GAAGAC	1 cut(s)	1762
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpmI	CTGGAG	2 cut(s)	702, 870
Bpu10I	CCTNAGC	2 cut(s)	111, 765
BpuEI	CTTGAG	2 cut(s)	82, 2170
BpuMI	CCSGG	3 cut(s)	87, 1476, 1728
BsaAI	YACGTR	1 cut(s)	649
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	2 cut(s)	1390, 2019
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	8 cut(s)	271, 336, 397, 613, 997, 1489, 2014, 2161
Bse118I	RCCGGY	1 cut(s)	992
Bse1I	ACTGG	6 cut(s)	180, 756, 842, 853, 1322, 1509
Bse21I	CCTNAGG	1 cut(s)	1283
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	4 cut(s)	338, 908, 998, 1491
BseDI	CCNNGG	8 cut(s)	271, 336, 397, 613, 997, 1489, 2014, 2161
BseGI	GGATG	2 cut(s)	1794, 1958
BseJI	GATNNNNATC	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	245, 756, 2150
BseNI	ACTGG	6 cut(s)	180, 756, 842, 853, 1322, 1509
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	3 cut(s)	220, 337, 1954
BseXI	GCAGC	5 cut(s)	487, 529, 1192, 1195, 1229
Bsh1236I	CGCG	4 cut(s)	1293, 1382, 1675, 1938
BshNI	GGYRCC	1 cut(s)	2018
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	5 cut(s)	17, 87, 993, 1476, 1728
BslFI	GGGAC	2 cut(s)	1377, 1753
BsmAI	GTCTC	2 cut(s)	624, 1230
BsmFI	GGGAC	2 cut(s)	1377, 1753
Bso31I	GGTCTC	1 cut(s)	624
Bsp1286I	GDGCHC	5 cut(s)	220, 280, 337, 1954, 2107
Bsp68I	TCGCGA	1 cut(s)	1293
BspCNI	CTCAG	3 cut(s)	246, 757, 2149
BspFNI	CGCG	4 cut(s)	1293, 1382, 1675, 1938
BspHI	TCATGA	1 cut(s)	712
BspMI	ACCTGC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	2018
BspTNI	GGTCTC	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	992
BsrI	ACTGG	6 cut(s)	180, 756, 842, 853, 1322, 1509
BssAI	RCCGGY	1 cut(s)	992
BssECI	CCNNGG	8 cut(s)	271, 336, 397, 613, 997, 1489, 2014, 2161
BssNI	GRCGYC	2 cut(s)	1390, 2019
BssT1I	CCWWGG	3 cut(s)	613, 2014, 2161
Bst2UI	CCWGG	4 cut(s)	338, 908, 998, 1491
Bst4CI	ACNGT	4 cut(s)	275, 1346, 1633, 1982
BstACI	GRCGYC	2 cut(s)	1390, 2019
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	649
BstC8I	GCNNGC	4 cut(s)	438, 601, 1041, 1215
BstDEI	CTNAG	8 cut(s)	111, 254, 305, 765, 1283, 1774, 2136, 2227
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	1794, 1958
BstFNI	CGCG	4 cut(s)	1293, 1382, 1675, 1938
BstH2I	RGCGCY	1 cut(s)	2022
BstHHI	GCGC	5 cut(s)	1213, 1382, 1481, 1906, 2021
BstMAI	GTCTC	2 cut(s)	624, 1230
BstMWI	GCNNNNNNNGC	8 cut(s)	485, 609, 770, 1008, 1214, 1217, 1478, 1493
BstNI	CCWGG	4 cut(s)	338, 908, 998, 1491
BstNSI	RCATGY	4 cut(s)	925, 1043, 1217, 1746
BstSCI	CCNGG	7 cut(s)	85, 336, 906, 996, 1474, 1489, 1726
BstSFI	CTRYAG	1 cut(s)	2172
BstSLI	GKGCMC	3 cut(s)	220, 337, 1954
BstUI	CGCG	4 cut(s)	1293, 1382, 1675, 1938
BstV1I	GCAGC	5 cut(s)	487, 529, 1192, 1195, 1229
BstV2I	GAAGAC	1 cut(s)	1762
BstX2I	RGATCY	8 cut(s)	49, 135, 195, 688, 733, 838, 1020, 1073
BstXI	CCANNNNNNTGG	2 cut(s)	187, 1228
BstYI	RGATCY	8 cut(s)	49, 135, 195, 688, 733, 838, 1020, 1073
Bsu36I	CCTNAGG	1 cut(s)	1283
BsuI	GTATCC	2 cut(s)	1443, 1762
BtgI	CCRYGG	1 cut(s)	271
BtgZI	GCGATG	3 cut(s)	1124, 1274, 1308
BtrI	CACGTC	2 cut(s)	2066, 2168
BtsCI	GGATG	2 cut(s)	1794, 1958
BtsI	GCAGTG	1 cut(s)	1548
BtsIMutI	CAGTG	2 cut(s)	187, 1548
BtuMI	TCGCGA	1 cut(s)	1293
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	4 cut(s)	438, 601, 1041, 1215
CaiI	CAGNNNCTG	1 cut(s)	848
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	5 cut(s)	1213, 1382, 1481, 1906, 2021
Cfr10I	RCCGGY	1 cut(s)	992
Cfr13I	GGNCC	7 cut(s)	78, 116, 326, 983, 1000, 1486, 1724
CseI	GACGC	1 cut(s)	1379
Csp6I	GTAC	4 cut(s)	474, 644, 1146, 1598
CviQI	GTAC	4 cut(s)	474, 644, 1146, 1598
DdeI	CTNAG	8 cut(s)	111, 254, 305, 765, 1283, 1774, 2136, 2227
DinI	GGCGCC	1 cut(s)	2020
EaeI	YGGCCR	2 cut(s)	347, 994
Eco130I	CCWWGG	3 cut(s)	613, 2014, 2161
Eco147I	AGGCCT	3 cut(s)	603, 612, 1011
Eco24I	GRGCYC	1 cut(s)	2107
Eco31I	GGTCTC	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	326, 1724
Eco81I	CCTNAGG	1 cut(s)	1283
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	4 cut(s)	336, 906, 996, 1489
EcoT14I	CCWWGG	3 cut(s)	613, 2014, 2161
EcoT22I	ATGCAT	1 cut(s)	1615
EcoT38I	GRGCYC	1 cut(s)	2107
EgeI	GGCGCC	1 cut(s)	2020
EheI	GGCGCC	1 cut(s)	2020
ErhI	CCWWGG	3 cut(s)	613, 2014, 2161
FalI	AAGNNNNNCTT	2 cut(s)	1683, 1715
FaqI	GGGAC	2 cut(s)	1377, 1753
FauI	CCCGC	4 cut(s)	380, 511, 625, 907
FauNDI	CATATG	3 cut(s)	1101, 1173, 1999
FbaI	TGATCA	1 cut(s)	1864
Fnu4HI	GCNGC	5 cut(s)	501, 543, 1206, 1209, 1218
FokI	GGATG	2 cut(s)	1801, 1945
FriOI	GRGCYC	1 cut(s)	2107
Fsp4HI	GCNGC	5 cut(s)	501, 543, 1206, 1209, 1218
FspBI	CTAG	6 cut(s)	330, 453, 1061, 1130, 2015, 2142
FspI	TGCGCA	2 cut(s)	1212, 1905
GlaI	GCGC	5 cut(s)	1212, 1381, 1480, 1905, 2020
GluI	GCNGC	5 cut(s)	501, 543, 1206, 1209, 1218
GsuI	CTGGAG	2 cut(s)	702, 870
HaeII	RGCGCY	1 cut(s)	2022
HapII	CCGG	5 cut(s)	17, 87, 993, 1476, 1728
HgaI	GACGC	1 cut(s)	1379
HhaI	GCGC	5 cut(s)	1213, 1382, 1481, 1906, 2021
Hin1I	GRCGYC	2 cut(s)	1390, 2019
Hin6I	GCGC	5 cut(s)	1211, 1380, 1479, 1904, 2019
HinP1I	GCGC	5 cut(s)	1211, 1380, 1479, 1904, 2019
HincII	GTYRAC	1 cut(s)	230
HindII	GTYRAC	1 cut(s)	230
HinfI	GANTC	4 cut(s)	575, 586, 727, 2090
HpaII	CCGG	5 cut(s)	17, 87, 993, 1476, 1728
HphI	GGTGA	5 cut(s)	389, 581, 778, 1088, 1541
Hpy166II	GTNNAC	4 cut(s)	230, 646, 1148, 1164
Hpy188I	TCNGA	4 cut(s)	398, 549, 1411, 1843
Hpy8I	GTNNAC	4 cut(s)	230, 646, 1148, 1164
HpyAV	CCTTC	2 cut(s)	1725, 2201
HpyCH4III	ACNGT	4 cut(s)	275, 1346, 1633, 1982
HpyCH4IV	ACGT	4 cut(s)	648, 1031, 2065, 2167
HpyF10VI	GCNNNNNNNGC	8 cut(s)	485, 609, 770, 1008, 1214, 1217, 1478, 1493
HpyF3I	CTNAG	8 cut(s)	111, 254, 305, 765, 1283, 1774, 2136, 2227
HpySE526I	ACGT	4 cut(s)	648, 1031, 2065, 2167
Hsp92I	GRCGYC	2 cut(s)	1390, 2019
HspAI	GCGC	5 cut(s)	1211, 1380, 1479, 1904, 2019
KasI	GGCGCC	1 cut(s)	2018
Ksp22I	TGATCA	1 cut(s)	1864
LmnI	GCTCC	4 cut(s)	550, 770, 1938, 2131
Lsp1109I	GCAGC	5 cut(s)	487, 529, 1192, 1195, 1229
LweI	GCATC	6 cut(s)	145, 646, 1101, 1285, 1297, 1967
MaeI	CTAG	6 cut(s)	330, 453, 1061, 1130, 2015, 2142
MaeII	ACGT	4 cut(s)	648, 1031, 2065, 2167
MaeIII	GTNAC	7 cut(s)	654, 844, 917, 1563, 1627, 1876, 2179
MboII	GAAGA	3 cut(s)	1762, 1977, 2215
MfeI	CAATTG	2 cut(s)	480, 934
MflI	RGATCY	8 cut(s)	49, 135, 195, 688, 733, 838, 1020, 1073
MhlI	GDGCHC	5 cut(s)	220, 280, 337, 1954, 2107
MlsI	TGGCCA	1 cut(s)	349
MluNI	TGGCCA	1 cut(s)	349
Mly113I	GGCGCC	1 cut(s)	2019
MmeI	TCCRAC	2 cut(s)	1271, 1808
Mox20I	TGGCCA	1 cut(s)	349
Mph1103I	ATGCAT	1 cut(s)	1615
MscI	TGGCCA	1 cut(s)	349
MseI	TTAA	8 cut(s)	30, 506, 663, 1056, 1079, 1923, 2045, 2117
MslI	CAYNNNNRTG	6 cut(s)	153, 180, 1104, 1226, 1293, 1608
Msp20I	TGGCCA	1 cut(s)	349
MspA1I	CMGCKG	1 cut(s)	2061
MspI	CCGG	5 cut(s)	17, 87, 993, 1476, 1728
MspR9I	CCNGG	7 cut(s)	87, 338, 908, 998, 1476, 1491, 1728
MunI	CAATTG	2 cut(s)	480, 934
MvaI	CCWGG	4 cut(s)	338, 908, 998, 1491
MvnI	CGCG	4 cut(s)	1293, 1382, 1675, 1938
MwoI	GCNNNNNNNGC	8 cut(s)	485, 609, 770, 1008, 1214, 1217, 1478, 1493
NarI	GGCGCC	1 cut(s)	2019
NciI	CCSGG	3 cut(s)	87, 1476, 1728
NdeI	CATATG	3 cut(s)	1101, 1173, 1999
NmuCI	GTSAC	2 cut(s)	917, 1627
NruI	TCGCGA	1 cut(s)	1293
NsbI	TGCGCA	2 cut(s)	1212, 1905
NsiI	ATGCAT	1 cut(s)	1615
NspI	RCATGY	4 cut(s)	925, 1043, 1217, 1746
PaeI	GCATGC	2 cut(s)	1043, 1217
PagI	TCATGA	1 cut(s)	712
PaqCI	CACCTGC	1 cut(s)	431
PceI	AGGCCT	3 cut(s)	603, 612, 1011
PciI	ACATGT	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	1 cut(s)	1672
PfeI	GAWTC	4 cut(s)	575, 586, 727, 2090
PflFI	GACNNNGTC	1 cut(s)	87
PflMI	CCANNNNNTGG	3 cut(s)	848, 2100, 2214
PkrI	GCNGC	5 cut(s)	502, 544, 1207, 1210, 1219
PluTI	GGCGCC	1 cut(s)	2022
Ppu21I	YACGTR	1 cut(s)	649
PscI	ACATGT	1 cut(s)	921
PshBI	ATTAAT	1 cut(s)	1923
Psp6I	CCWGG	4 cut(s)	336, 906, 996, 1489
PspGI	CCWGG	4 cut(s)	336, 906, 996, 1489
PspPI	GGNCC	7 cut(s)	78, 116, 326, 983, 1000, 1486, 1724
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	8 cut(s)	49, 135, 195, 688, 733, 838, 1020, 1073
PsyI	GACNNNGTC	1 cut(s)	87
RruI	TCGCGA	1 cut(s)	1293
RsaI	GTAC	4 cut(s)	475, 645, 1147, 1599
RsaNI	GTAC	4 cut(s)	474, 644, 1146, 1598
RseI	CAYNNNNRTG	6 cut(s)	153, 180, 1104, 1226, 1293, 1608
SaqAI	TTAA	8 cut(s)	30, 506, 663, 1056, 1079, 1923, 2045, 2117
SatI	GCNGC	5 cut(s)	501, 543, 1206, 1209, 1218
Sau96I	GGNCC	7 cut(s)	78, 116, 326, 983, 1000, 1486, 1724
ScrFI	CCNGG	7 cut(s)	87, 338, 908, 998, 1476, 1491, 1728
SduI	GDGCHC	5 cut(s)	220, 280, 337, 1954, 2107
SfaNI	GCATC	6 cut(s)	145, 646, 1101, 1285, 1297, 1967
SfcI	CTRYAG	1 cut(s)	2172
SfiI	GGCCNNNNNGGCC	2 cut(s)	609, 1008
SfoI	GGCGCC	1 cut(s)	2020
SinI	GGWCC	2 cut(s)	326, 1724
SmiMI	CAYNNNNRTG	6 cut(s)	153, 180, 1104, 1226, 1293, 1608
SmlI	CTYRAG	2 cut(s)	97, 2149
SmoI	CTYRAG	2 cut(s)	97, 2149
SpeI	ACTAGT	1 cut(s)	452
SphI	GCATGC	2 cut(s)	1043, 1217
SseBI	AGGCCT	3 cut(s)	603, 612, 1011
SspDI	GGCGCC	1 cut(s)	2018
SspI	AATATT	2 cut(s)	369, 1815
SspMI	CTAG	6 cut(s)	330, 453, 1061, 1130, 2015, 2142
StuI	AGGCCT	3 cut(s)	603, 612, 1011
StyD4I	CCNGG	7 cut(s)	85, 336, 906, 996, 1474, 1489, 1726
StyI	CCWWGG	3 cut(s)	613, 2014, 2161
TaaI	ACNGT	4 cut(s)	275, 1346, 1633, 1982
TaiI	ACGT	4 cut(s)	651, 1034, 2068, 2170
TaqI	TCGA	4 cut(s)	69, 168, 202, 1255
TaqII	GACCGA	1 cut(s)	881
TatI	WGTACW	2 cut(s)	473, 643
TfiI	GAWTC	4 cut(s)	575, 586, 727, 2090
Tru1I	TTAA	8 cut(s)	30, 506, 663, 1056, 1079, 1923, 2045, 2117
Tru9I	TTAA	8 cut(s)	30, 506, 663, 1056, 1079, 1923, 2045, 2117
TscAI	CASTG	2 cut(s)	187, 1548
TseFI	GTSAC	2 cut(s)	917, 1627
TseI	GCWGC	5 cut(s)	500, 542, 1205, 1208, 1217
Tsp45I	GTSAC	2 cut(s)	917, 1627
TspDTI	ATGAA	7 cut(s)	309, 729, 1146, 1352, 1598, 1613, 1977
TspRI	CASTG	2 cut(s)	187, 1548
Tth111I	GACNNNGTC	1 cut(s)	87
Van91I	CCANNNNNTGG	3 cut(s)	848, 2100, 2214
VpaK11BI	GGWCC	2 cut(s)	326, 1724
VspI	ATTAAT	1 cut(s)	1923
XapI	RAATTY	4 cut(s)	33, 699, 716, 812
XceI	RCATGY	4 cut(s)	925, 1043, 1217, 1746
XmaJI	CCTAGG	1 cut(s)	2014
XspI	CTAG	6 cut(s)	330, 453, 1061, 1130, 2015, 2142
Zsp2I	ATGCAT	1 cut(s)	1615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.