Prupe.2G002900_v2.0.a1

citrate synthase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
332697 .. 340559
7863 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G002900.1

Sequence Viewer

Length: 1422 bp
ATGGTGTTCTTCAGGAGTGTCAATGCGCTTTCCAAGCTCCGTTCTCGTCTTGGCCAACAGTCGAATCTCAGAGATTCCGTCAGATGGCTTCAAACGCAAACCTCCACAGATCTTGACCTTCGTTCTCAGTTGAAGGAATTGATTCCAGAACAACAGGAACGTCTGAAGAAAATCAAGGCAGAATATGGAAAAGTTCAACTGGGCAATATCACTGTTGATATGGTTCTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGAAACTTCCTTACTTGACCCAGATGAGGGGATTCGTTTCAGGGGTTTGTCAATTCCAGAATGCCAGAAAGTATTACCAGGTGCAAAGCCTGGTGGGGAACCTTTGCCTGAGGGTCTTCTGTGGCTACTTTTAACAGGAAAGGTACCAAGCAAAGAGCAAGTTGATGCATTATCGGAGGAATTGAGGAGCCGTGCCGCAGTTCCAGATTATGTGTATAAGGCCATTGATGCTCTGCCTATTACAGCACATCCAATGACTCAGTTTACCACCGGTGTTATGGCCCTCCAGGTTCAGAGTGAATTCCAGAAGGCATACGATAAGGGGATACATAAATCGAAGTACTGGGAGCCAACTTTTGAGGATTCACTTAGCTTGATTGCACAACTGCCAGTAGTAGCTTCTTATGTTTACCAGAGAATTTTTAAGGATGGAAAAGTAATACCTGTTGATGACTCCCTGGATTATGGTGCAAATTTTTCACACTTGTTGGGCTTTGACGATCCCAAGATGCATGAGCTTATGAGGCTTTATGTCACCATTCATAGTGATCACGAAGGTGGGAATGTCAGTGCTCACACCGGCCACCTTGTTGCTAGTGCACTGTCAGACCCTTATCTTTCATTTGCAGCTGCATTAAATGGGTTGGCTGGCCCACTCCATGGTTTGGCTAATCAGGAAGTTTTGCTCTGGATAAAATCTGTGGTAGATGAAGTTGGGGAGAACGTAACTACAGAGCAGTTGAAAGATTATGTCTGGAAAACATTAAACAGTGGGAAGGTTGTTCCTGGTTTTGGACACGGAGTCTTGCGTAAAACAGATCCACGATACTCATGTCAACGGGAGTTTGCATTAAAGCACTTGCCTGATGATCCGCTGTTTCAGCTGGTCTCCAAGCTTTATGAAGTCGTGCCTCCCATTCTTATCGAACTAGGCAAGGTTAAAAACCCCTGGCCCAATGTAGATGCTCACAGTGGAGTTCTGTTGAACCATTTTGGTTTGACCGAGGCAAGATTTTTTACTGTTCTCTTTGGCGTATCAAGGAGTATAGGGATTGGTTCTCAGCTGATATGGGACCGGGCTCTTGGTTTGCCTCTTGAAAGGCCAAAAAGCGTTACGATGGAATCACTTGAAAATTACTGCAAGAAAGCAGCTTCATCCTGA

Protein Analysis

474

Amino Acids

52.6

Weight (kDa)

6.51

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 403
AccB7I CCANNNNNTGG 2 cut(s) 920, 925
AciI CCGC 2 cut(s) 456, 1133
AclWI GGATC 3 cut(s) 755, 1073, 1124
AcoI YGGCCR 2 cut(s) 52, 841
AcsI RAATTY 3 cut(s) 560, 678, 733
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 2 cut(s) 405, 602
AfiI CCNNNNNNNGG 6 cut(s) 84, 286, 287, 920, 925, 1052
AgeI ACCGGT 1 cut(s) 530
AgsI TTSAA 7 cut(s) 92, 133, 197, 1003, 1246, 1358, 1391
AhdI GACNNNNNGTC 1 cut(s) 1061
AjnI CCWGG 6 cut(s) 337, 349, 546, 717, 1045, 1208
AleI CACNNNNGTG 1 cut(s) 816
AluBI AGCT 9 cut(s) 37, 633, 659, 778, 890, 1144, 1156, 1324, 1412
AluI AGCT 9 cut(s) 37, 633, 659, 778, 890, 1144, 1156, 1324, 1412
Alw21I GWGCWC 2 cut(s) 835, 862
Alw26I GTCTC 1 cut(s) 1153
Alw44I GTGCAC 1 cut(s) 858
AlwI GGATC 3 cut(s) 755, 1073, 1124
AoxI GGCC 7 cut(s) 52, 480, 540, 841, 910, 1211, 1361
ApaLI GTGCAC 1 cut(s) 858
ApeKI GCWGC 3 cut(s) 887, 890, 1409
ApoI RAATTY 3 cut(s) 560, 678, 733
AsiGI ACCGGT 1 cut(s) 530
Asp700I GAANNNNTTC 1 cut(s) 141
Asp718I GGTACC 1 cut(s) 403
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 4 cut(s) 541, 911, 1212, 1333
AsuC2I CCSGG 1 cut(s) 1337
AsuHPI GGTGA 1 cut(s) 787
AvaII GGWCC 1 cut(s) 1333
AxyI CCTNAGG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 862
BaeI ACNNNNGTAYC 2 cut(s) 1078, 1111
BalI TGGCCA 1 cut(s) 54
BanI GGYRCC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 1342
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 835, 862
BbvI GCAGC 2 cut(s) 877, 899
BccI CCATC 3 cut(s) 78, 683, 1372
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 6 cut(s) 339, 351, 548, 719, 1047, 1210
BciVI GTATCC 1 cut(s) 579
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 1 cut(s) 1337
BcoDI GTCTC 1 cut(s) 1153
BfaI CTAG 2 cut(s) 855, 1190
BfmI CTRYAG 1 cut(s) 990
BfuI GTATCC 1 cut(s) 579
BglII AGATCT 1 cut(s) 109
BisI GCNGC 4 cut(s) 456, 888, 891, 1410
BlsI GCNGC 4 cut(s) 457, 889, 892, 1411
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 7 cut(s) 339, 351, 548, 719, 1047, 1210, 1337
Bme18I GGWCC 1 cut(s) 1333
BmeRI GACNNNNNGTC 1 cut(s) 1061
BmgT120I GGNCC 4 cut(s) 541, 911, 1212, 1333
BmiI GGNNCC 5 cut(s) 360, 405, 449, 609, 1334
BmrFI CCNGG 7 cut(s) 339, 351, 548, 719, 1047, 1210, 1337
BmrI ACTGGG 2 cut(s) 209, 613
BmsI GCATC 4 cut(s) 415, 478, 759, 1213
BmuI ACTGGG 2 cut(s) 209, 613
BpiI GAAGAC 1 cut(s) 368
BpmI CTGGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 1337
BsaI GGTCTC 1 cut(s) 1153
BsaJI CCNNGG 4 cut(s) 717, 919, 1208, 1263
BsaWI WCCGGW 1 cut(s) 530
Bsc4I CCNNNNNNNGG 6 cut(s) 84, 286, 287, 920, 925, 1052
Bse118I RCCGGY 2 cut(s) 530, 839
Bse1I ACTGG 3 cut(s) 204, 608, 650
Bse21I CCTNAGG 1 cut(s) 369
BseBI CCWGG 6 cut(s) 339, 351, 548, 719, 1047, 1210
BseDI CCNNGG 4 cut(s) 717, 919, 1208, 1263
BseGI GGATG 3 cut(s) 508, 694, 1415
BseLI CCNNNNNNNGG 6 cut(s) 84, 286, 287, 920, 925, 1052
BseMII CTCAG 5 cut(s) 82, 140, 360, 533, 1334
BseNI ACTGG 3 cut(s) 204, 608, 650
BseRI GAGGAG 1 cut(s) 460
BseSI GKGCMC 1 cut(s) 862
BseXI GCAGC 2 cut(s) 877, 899
BshFI GGCC 7 cut(s) 54, 482, 542, 843, 912, 1213, 1363
BshNI GGYRCC 1 cut(s) 403
BshTI ACCGGT 1 cut(s) 530
BsiHKAI GWGCWC 2 cut(s) 835, 862
BsiSI CCGG 3 cut(s) 531, 840, 1336
BslFI GGGAC 1 cut(s) 1346
BslI CCNNNNNNNGG 6 cut(s) 84, 286, 287, 920, 925, 1052
BsmAI GTCTC 1 cut(s) 1153
BsmFI GGGAC 1 cut(s) 1346
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 7 cut(s) 54, 482, 542, 843, 912, 1213, 1363
Bso31I GGTCTC 1 cut(s) 1153
Bsp1286I GDGCHC 3 cut(s) 835, 862, 1342
Bsp143I GATC 5 cut(s) 109, 760, 808, 1078, 1129
Bsp19I CCATGG 1 cut(s) 919
BspACI CCGC 2 cut(s) 456, 1133
BspANI GGCC 7 cut(s) 54, 482, 542, 843, 912, 1213, 1363
BspCNI CTCAG 5 cut(s) 81, 139, 361, 532, 1333
BspLI GGNNCC 5 cut(s) 360, 405, 449, 609, 1334
BspPI GGATC 3 cut(s) 755, 1073, 1124
BspT107I GGYRCC 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 1153
BsrFI RCCGGY 2 cut(s) 530, 839
BsrI ACTGG 3 cut(s) 204, 608, 650
BssAI RCCGGY 2 cut(s) 530, 839
BssECI CCNNGG 4 cut(s) 717, 919, 1208, 1263
BssMI GATC 5 cut(s) 109, 760, 808, 1078, 1129
BssT1I CCWWGG 1 cut(s) 919
Bst2UI CCWGG 6 cut(s) 339, 351, 548, 719, 1047, 1210
Bst4CI ACNGT 6 cut(s) 60, 214, 864, 1031, 1232, 1282
BstC8I GCNNGC 1 cut(s) 910
BstDEI CTNAG 6 cut(s) 68, 126, 369, 519, 629, 1320
BstDSI CCRYGG 1 cut(s) 919
BstF5I GGATG 3 cut(s) 508, 694, 1415
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 5 cut(s) 112, 763, 811, 1081, 1132
BstMAI GTCTC 1 cut(s) 1153
BstMBI GATC 5 cut(s) 109, 760, 808, 1078, 1129
BstMWI GCNNNNNNNGC 5 cut(s) 34, 94, 488, 784, 1141
BstNI CCWGG 6 cut(s) 339, 351, 548, 719, 1047, 1210
BstSCI CCNGG 7 cut(s) 337, 349, 546, 717, 1045, 1208, 1335
BstSFI CTRYAG 1 cut(s) 990
BstSLI GKGCMC 1 cut(s) 862
BstV1I GCAGC 2 cut(s) 877, 899
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 2 cut(s) 109, 1078
BstYI RGATCY 2 cut(s) 109, 1078
Bsu36I CCTNAGG 1 cut(s) 369
BsuI GTATCC 1 cut(s) 579
BsuRI GGCC 7 cut(s) 54, 482, 542, 843, 912, 1213, 1363
BtgI CCRYGG 1 cut(s) 919
BtsCI GGATG 3 cut(s) 508, 694, 1415
BtsIMutI CAGTG 5 cut(s) 210, 835, 860, 1036, 1237
Cac8I GCNNGC 1 cut(s) 910
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 2 cut(s) 530, 839
Cfr13I GGNCC 4 cut(s) 541, 911, 1212, 1333
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 2 cut(s) 404, 601
CspAI ACCGGT 1 cut(s) 530
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 3 cut(s) 773, 920, 1092
CviQI GTAC 2 cut(s) 404, 601
DdeI CTNAG 6 cut(s) 68, 126, 369, 519, 629, 1320
DpnI GATC 5 cut(s) 111, 762, 810, 1080, 1131
DpnII GATC 5 cut(s) 109, 760, 808, 1078, 1129
DriI GACNNNNNGTC 1 cut(s) 1061
EaeI YGGCCR 2 cut(s) 52, 841
Eam1105I GACNNNNNGTC 1 cut(s) 1061
Eco130I CCWWGG 1 cut(s) 919
Eco24I GRGCYC 1 cut(s) 1342
Eco31I GGTCTC 1 cut(s) 1153
Eco47I GGWCC 1 cut(s) 1333
Eco57I CTGAAG 1 cut(s) 185
Eco81I CCTNAGG 1 cut(s) 369
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 6 cut(s) 337, 349, 546, 717, 1045, 1208
EcoT14I CCWWGG 1 cut(s) 919
EcoT22I ATGCAT 2 cut(s) 430, 774
EcoT38I GRGCYC 1 cut(s) 1342
ErhI CCWWGG 1 cut(s) 919
FaeI CATG 3 cut(s) 776, 923, 1095
FaqI GGGAC 1 cut(s) 1346
FatI CATG 3 cut(s) 772, 919, 1091
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 4 cut(s) 456, 888, 891, 1410
FokI GGATG 3 cut(s) 495, 701, 1402
FriOI GRGCYC 1 cut(s) 1342
Fsp4HI GCNGC 4 cut(s) 456, 888, 891, 1410
FspBI CTAG 2 cut(s) 855, 1190
GlaI GCGC 1 cut(s) 27
GluI GCNGC 4 cut(s) 456, 888, 891, 1410
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 7 cut(s) 54, 482, 542, 843, 912, 1213, 1363
HapII CCGG 3 cut(s) 531, 840, 1336
HhaI GCGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 776, 923, 1095
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 1097
HindII GTYRAC 1 cut(s) 1097
HindIII AAGCTT 1 cut(s) 1154
HinfI GANTC 9 cut(s) 64, 74, 142, 292, 517, 623, 713, 1062, 1382
HpaII CCGG 3 cut(s) 531, 840, 1336
HphI GGTGA 1 cut(s) 787
Hpy166II GTNNAC 4 cut(s) 525, 670, 860, 1097
Hpy188I TCNGA 6 cut(s) 71, 83, 165, 436, 555, 868
Hpy8I GTNNAC 4 cut(s) 525, 670, 860, 1097
HpyAV CCTTC 5 cut(s) 127, 128, 562, 809, 1030
HpyCH4III ACNGT 6 cut(s) 60, 214, 864, 1031, 1232, 1282
HpyCH4IV ACGT 2 cut(s) 160, 984
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 94, 488, 784, 1141
HpyF3I CTNAG 6 cut(s) 68, 126, 369, 519, 629, 1320
HpySE526I ACGT 2 cut(s) 160, 984
Hsp92II CATG 3 cut(s) 776, 923, 1095
HspAI GCGC 1 cut(s) 26
KpnI GGTACC 1 cut(s) 407
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 5 cut(s) 109, 760, 808, 1078, 1129
LmnI GCTCC 3 cut(s) 42, 447, 607
Lsp1109I GCAGC 2 cut(s) 877, 899
LweI GCATC 4 cut(s) 415, 478, 759, 1213
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 2 cut(s) 855, 1190
MaeII ACGT 2 cut(s) 160, 984
MaeIII GTNAC 3 cut(s) 793, 985, 1372
MalI GATC 5 cut(s) 111, 762, 810, 1080, 1131
MboI GATC 5 cut(s) 109, 760, 808, 1078, 1129
MboII GAAGA 2 cut(s) 178, 368
MflI RGATCY 2 cut(s) 109, 1078
MhlI GDGCHC 3 cut(s) 835, 862, 1342
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 7 cut(s) 137, 312, 440, 560, 678, 733, 1393
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 3 cut(s) 511, 707, 1071
Mox20I TGGCCA 1 cut(s) 54
Mph1103I ATGCAT 2 cut(s) 430, 774
MroXI GAANNNNTTC 1 cut(s) 141
MscI TGGCCA 1 cut(s) 54
MseI TTAA 6 cut(s) 392, 684, 896, 1025, 1112, 1200
MslI CAYNNNNRTG 1 cut(s) 816
Msp20I TGGCCA 1 cut(s) 54
MspA1I CMGCKG 4 cut(s) 890, 1135, 1144, 1324
MspI CCGG 3 cut(s) 531, 840, 1336
MspR9I CCNGG 7 cut(s) 339, 351, 548, 719, 1047, 1210, 1337
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 6 cut(s) 339, 351, 548, 719, 1047, 1210
MwoI GCNNNNNNNGC 5 cut(s) 34, 94, 488, 784, 1141
NciI CCSGG 1 cut(s) 1337
NcoI CCATGG 1 cut(s) 919
NdeII GATC 5 cut(s) 109, 760, 808, 1078, 1129
NlaIII CATG 3 cut(s) 776, 923, 1095
NlaIV GGNNCC 5 cut(s) 360, 405, 449, 609, 1334
NmuCI GTSAC 1 cut(s) 793
NsiI ATGCAT 2 cut(s) 430, 774
OliI CACNNNNGTG 1 cut(s) 816
PctI GAATGC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 6 cut(s) 64, 74, 142, 292, 623, 1382
PflMI CCANNNNNTGG 2 cut(s) 920, 925
PinAI ACCGGT 1 cut(s) 530
PkrI GCNGC 4 cut(s) 457, 889, 892, 1411
PleI GAGTC 3 cut(s) 511, 707, 1070
PpsI GAGTC 3 cut(s) 511, 707, 1070
Psp6I CCWGG 6 cut(s) 337, 349, 546, 717, 1045, 1208
PspGI CCWGG 6 cut(s) 337, 349, 546, 717, 1045, 1208
PspN4I GGNNCC 5 cut(s) 360, 405, 449, 609, 1334
PspPI GGNCC 4 cut(s) 541, 911, 1212, 1333
PsuI RGATCY 2 cut(s) 109, 1078
PvuII CAGCTG 3 cut(s) 890, 1144, 1324
RsaI GTAC 2 cut(s) 405, 602
RsaNI GTAC 2 cut(s) 404, 601
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 6 cut(s) 392, 684, 896, 1025, 1112, 1200
SatI GCNGC 4 cut(s) 456, 888, 891, 1410
Sau3AI GATC 5 cut(s) 109, 760, 808, 1078, 1129
Sau96I GGNCC 4 cut(s) 541, 911, 1212, 1333
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 3 cut(s) 511, 707, 1071
ScrFI CCNGG 7 cut(s) 339, 351, 548, 719, 1047, 1210, 1337
SduI GDGCHC 3 cut(s) 835, 862, 1342
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 4 cut(s) 415, 478, 759, 1213
SfcI CTRYAG 1 cut(s) 990
SgrAI CRCCGGYG 1 cut(s) 530
SinI GGWCC 1 cut(s) 1333
SmiMI CAYNNNNRTG 1 cut(s) 816
Sse9I AATT 7 cut(s) 137, 312, 440, 560, 678, 733, 1393
SsiI CCGC 2 cut(s) 456, 1133
SspMI CTAG 2 cut(s) 855, 1190
StyD4I CCNGG 7 cut(s) 337, 349, 546, 717, 1045, 1208, 1335
StyI CCWWGG 1 cut(s) 919
TaaI ACNGT 6 cut(s) 60, 214, 864, 1031, 1232, 1282
TaiI ACGT 2 cut(s) 163, 987
TaqI TCGA 3 cut(s) 62, 596, 1185
TaqII GACCGA 1 cut(s) 1277
TasI AATT 7 cut(s) 137, 312, 440, 560, 678, 733, 1393
TatI WGTACW 1 cut(s) 600
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 6 cut(s) 64, 74, 142, 292, 623, 1382
Tru1I TTAA 6 cut(s) 392, 684, 896, 1025, 1112, 1200
Tru9I TTAA 6 cut(s) 392, 684, 896, 1025, 1112, 1200
TscAI CASTG 5 cut(s) 217, 835, 867, 1036, 1237
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 3 cut(s) 887, 890, 1409
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 5 cut(s) 791, 870, 984, 1176, 1404
TspGWI ACGGA 3 cut(s) 29, 67, 1074
TspRI CASTG 5 cut(s) 217, 835, 867, 1036, 1237
Van91I CCANNNNNTGG 2 cut(s) 920, 925
VneI GTGCAC 1 cut(s) 858
VpaK11BI GGWCC 1 cut(s) 1333
XapI RAATTY 3 cut(s) 560, 678, 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 2 cut(s) 855, 1190
ZrmI AGTACT 1 cut(s) 602
Zsp2I ATGCAT 2 cut(s) 430, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.