Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011934

Physical Location & Seq

Genomic Coordinates Forward (+)

1415795 .. 1423639

Gene Structure 7845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01000.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3753 bp

ATGATGAAGCAGAAACGCCGCGTTCCGGTGGTCCTTTGGCGCCTCTTCCACAACCGCGCGCGCACTCTGGCCCACACTCTCGCCACCTTACTCCCTCCTCGTTCCCCAAAACCCCAATGTCGTTTCTGCAACGGCCGCCGTTGCCTCCGCTGCTGCTCCGACGCCATGTCGTTTCTCCTCCGACCCAACGACCCCTCCGACTACCGCTCTCTCCTAGACACCTGCTTCGTCGTCCTCTCCGACAACGCTCCCCGCATCACGCGCTTCTCCCCTGAATCTCACTGGTCCCAAATTGAGATCGTTACAGCTGTCATCGAAACGACGATGCTGGAGCAATCCATGTCTTCCAATGTGATATGCAGTGGTTATAATAAGGTTAACAAGTCCAGCGCCATTTCGGAACTTCTTACTTCTTCAGCTTGGTGTCTTCTCTTAGAAAGGGTTGGGGATGGCATTATGGTTTATTTACTAAAGAATGCGTCGATATTTCTGCGAATTGCGGATGAGCAACACCAGCAGGTGACTGGTCCACCCGTTAGTAACTTATGTAAGAGGTTCAATTGCACACCGAGTTCGAAATGGCAACCGTCGTCCCTTGTTCCATGTGGACCTGGAAACAAGAGGAAAAGAGATGATGACGTTCACTCAATTTTAAAGAAAAGCCAGCTCATGAGTTCAGTCAGCATTGGAGAAAGCTCGAGTTCTATTACCTGCAATAGCTGCTGCAACCATAGTGAAAATTACAGGAAGACGCATACTCATATAAGTTTTTCTGAAACATCTACACCAGCAACCAGCACACTGACCAATGATTGTGAAGGGAATTTAAATAAGGAACTTACAGAGAGTTTGGAACCTCTAAGAAAGCGTTCAAGACCATATCGTTGGCAGCGTTGCAGGAAACACAGGCAAATATCTGTTCAAGAAGCCAGTGTCAAGGGTCTTTTTAAAACAACTGTCAGTGATAATCAATGGTTACCTGGAAGGCATTTGTCTTCTTTGAAACCCAGCTTGGGTCGACAATTTGAACAGTGCTATTGTTTGGGGTTCCAAGTTGCCCAAAAGGTTGCCAAGGGTGCTGAAATAGATAGGAAATCCTTGTTCTACAACTTGGAACGTTCTTCATCAATCTTTCCTAGAAAGCATGTACTGAATTCTGTAAAGCCTGATTCTGTTGGTTCAGAGTTTCTTGTTAGTAGTATTTTTGGTGTATATGATACAGAAAGTGCACTGTCAAAGACATGCTCCGATAGCAGTGGTCTTTGTCTCATGGGTTCTGCGTGCCTGTATCATTCACTTGTTAAGTTGCTAAAGATTCTTATACGTAGAGCACAATATGGCCATCACTTGGGATTATTGGAAAAGCACTGTGTTGTTACAACTGTAAATCCTAATACAATTAAAAGCGGTGGTTGCAGCTTTGAGGGAGAAAAGTGGGAGTACGGTGTACTCAAGAAATCTCAGTGTTGTACTACGGACCATTGCAGTAAATCTTCTGAAGTCAGTGAATCTTTCTCTGAGGAAATTAAGTCTCACTGTTTGAACAGTCAGGTGGAGTCGTTTATATGGGCAGTTTGTAGGAGTATTGTTCCTCCCGAGTTGCTAGGAACTCCTTCGAACTGGATAAATTTGAGGAGAACTATTTCGAAGTTCATTCGACTCAGAAGATATGAAAGGTTTTCCTTAAAACAGTGTCTGCATAAATTGAAAATGTCTAGGTTCCCATTTCTATCCAATAAACATTATTTCTGCTGCCTGAATACTGAGGCACCAAAACATGTGGATGGAAAAGGTGTAGACATTGAAAAGGGATCCAGTATATTGAATGATGCCGTACATATTGTTAAAGAAAAATTGTTAGAAAGTTGGATTTATTGGTTCTTTCAATCTTTAGTTGTGCCATTGTTGCAAGCCAACTTCTATGTCACTCAAAGTGAGCATGGGAAGCAAGATGTATATTACTACCGGAAGTCGGTTTGGGAGAAGATGAAGAATAAGACCATCATGACTTACATGGATCAGAGTTATCAGTATTTGGATGATGCGGCAACTAGAAGAATTATAAGGAAACGATCATTTGGGTTTTCTAAGCTCCGGATTTTTCCAAAAGAATATGAAGTGAGGTTGCTAGCAAATTTAAAAGCATCATCAAAAATGTCACGAAAAGAGTTATGTTTGGCAGACCAGTCTGGTAAATTATTAAGAGGAAAGAAACTGCATCGGAGAAAAATCACATTTGAGCGTTTCAAGTCCGTGAATCGTGTTCTTCGTGATTCACATGTTGTTCTAAAAGCTATGCAGCTGAAAGAGCCAGGGAAATTAGGATCATCAGTGTTTGATTACAATGATGTATACAGGAAGTTATGCCCATTTCTTCTTGGTATAAAGAGTGGATTCACTACGAAACCTGATGTGTTTATCATTGTCTCTGATGTGTCAAAAGCCTTCGATTCTGTTAACCAGGATAAGCTGCTTGGTGTGCTGAAAGATGTTATAAGAGCAGATGAATATATTTTGCAGCAGTCTCATCATGTCATTTTCAAGAAGGGGTCATTAAGGGTTCATGAGAACCGTGCATGTCTTGATCAAAATACCGGCTCAAGTTTTAAATCCAAATTATGTAGTGTCCTTGTTAATCAGGAGTGCAGCAGGTCTGTGAAGAAGAAGGAGCTATTTTTTAATCTACATGAGCATGTTAAGCGCAATGTGCTGCAGTTGGATAAAAAGTTCTATTTGCAACGTACTGGTATTCCTCAAGGAAGTATTCTGTCAGCTTTGCTTTGCTCATTATACTATGGACATCTGGATCGGAATGTGATCTTTCCATTTCTTGAAAAAACTTGGGAACCTTCTGCAGATTTATCTAGAGGACATGATTTTCAAGTGGCTTCTGCTGCAAAGAGTAGCAGTGAGGATAAAATCTCCTCATCCTCTAGATATACTCTACTTAGATTTATTGATGATTTTCTATTCATTTCAACATCAAAGGCACAGGCTGCTAGCTTCTTCTCAAGGTTGCAACGAGGATTTCGGGATTACAACTGCTACATGAATGAGAAGAAGTTCTGTGTCAATTTTGATATCGGAAACATGGCAGGTTTGGCATCAAACAGGGTATCCAGTGGTGATGACGGCATTTTATTTGTTCGATGGAGTGGCTTGCTTATCAATTCTTGCACACTTGAAGTTCAGGCAGACTATACAAAGTACTTGAAAAACCATCTAAGTTCAACTCTTACTGTCCTCTACCAAGGCAGACCTGGTCACCATTTGAAGAAAAAATTGCTTGACTACATGAGTCCTAAATGTCATCCCTTATTCTTTGATTCCCACATTAATTCAGCATCTGTGGTGAGATTGAATGTCTACCAAGCCTTCTTGTTATGTGCAATGAAGTTCCATTGTTATGTTCGAGCCTTATCATATATCTGCAAGTTTCACTTTAGATTCTACGCTTACATTATCCAAAGATCATTGAGGTTCATGTACAGGCTCATAAAGAAGAGGATGTGTTCATTGTATACTGACTCTAACTTCTGCCCAATTCTTCAATTGGAAGAGGAAGAAGTTGAATGGCTTGGTTTATATGCTTATATCGAAGTGTTGAAAAGAAAACAATCACGGTATAAGGAGTTGCTCTCCTTGTTGAAGTTACAGTTGTTAAATCATAAGATATGCGGCTCTGAGTCTTCTGAGCTGAGTTATGCAGTTGATAGATCACATTCCTCTCTACTGTGGAAGATCAAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000333 GO:0000723 GO:0003674 GO:0003676 GO:0003677 GO:0003720 GO:0003721 GO:0003723 GO:0003824 GO:0003964 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007004 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009888 GO:0009987 GO:0010073 GO:0010449 GO:0010833 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019827 GO:0022622 GO:0032200 GO:0032501 GO:0032502 GO:0032991 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035266 GO:0040007 GO:0042162 GO:0042575 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050000 GO:0051179 GO:0051276 GO:0051640 GO:0051641 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070034 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05165 ko05166 ko05200 ko05225 ko05226 map05165 map05166 map05200 map05225 map05226

Pfam Domains

Protein Families

RVT_1 Telomerase_RBD

Protein Analysis

1251

Amino Acids

143.57

Weight (kDa)

9.5

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Telomerase_RBD	PF12009	517 - 670	1.4e-34	Telomerase ribonucleoprotein complex - RNA binding domain
RVT_1	PF00078	837 - 1023	1.2e-07	Reverse transcriptase (RNA-dependent DNA polymerase)
TERT_C	PF21399	1090 - 1216	8.1e-21	Telomerase reverse transcriptase, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16850 AT5G16850
fragaria_vesca	FvH4_7g01000 FvH4_7g01000
malus_domestica	MD07G1010300.v1.1
prunus_persica	Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0315901
rosa_laevigata	RLG00000030725
rosa_roxburghii	Rroxscaffold_4G00331320
rosa_rugosa	Rorug01G0006900
rosa_samantha	Rh1AG017600 Rh1BG010500 Rh1CG015000 Rh1DG010600
rosa_wichuraiana	Rw1G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	369, 2063, 2495
AarI	CACCTGC	2 cut(s)	230, 508
Acc36I	ACCTGC	5 cut(s)	230, 508, 719, 2640, 3086
AccB1I	GGYRCC	2 cut(s)	39, 1768
AccB7I	CCANNNNNTGG	1 cut(s)	1348
AccBSI	CCGCTC	1 cut(s)	207
AccI	GTMKAC	5 cut(s)	1018, 1797, 2352, 3366, 3521
AccII	CGCG	5 cut(s)	21, 57, 59, 61, 262
AccIII	TCCGGA	1 cut(s)	2094
AclI	AACGTT	1 cut(s)	1117
AclWI	GGATC	5 cut(s)	1806, 1819, 2025, 2332, 2814
AcoI	YGGCCR	2 cut(s)	133, 1339
AcsI	RAATTY	4 cut(s)	823, 1153, 1627, 2134
AcuI	CTGAAG	2 cut(s)	399, 1518
AcyI	GRCGYC	2 cut(s)	40, 162
AfaI	GTAC	8 cut(s)	1149, 1442, 1449, 1471, 1836, 2743, 3209, 3488
AfiI	CCNNNNNNNGG	4 cut(s)	25, 1013, 1348, 1972
AflIII	ACRYGT	2 cut(s)	1777, 2278
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	5 cut(s)	610, 979, 2311, 2460, 3259
AjuI	GAANNNNNNNTTGG	2 cut(s)	995, 1027
AloI	GAACNNNNNNTCC	2 cut(s)	2711, 2743
Alw21I	GWGCWC	2 cut(s)	1231, 1333
Alw26I	GTCTC	4 cut(s)	1271, 1536, 2431, 2529
Alw44I	GTGCAC	1 cut(s)	1227
AlwI	GGATC	5 cut(s)	1806, 1819, 2025, 2332, 2814
AlwNI	CAGNNNCTG	2 cut(s)	1696, 3347
Ama87I	CYCGRG	2 cut(s)	697, 1595
Aor13HI	TCCGGA	1 cut(s)	2094
AoxI	GGCC	3 cut(s)	69, 133, 1339
ApaLI	GTGCAC	1 cut(s)	1227
ApoI	RAATTY	4 cut(s)	823, 1153, 1627, 2134
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AseI	ATTAAT	1 cut(s)	3336
Asp700I	GAANNNNTTC	4 cut(s)	868, 1612, 1642, 3062
AspLEI	GCGC	7 cut(s)	42, 59, 61, 63, 264, 392, 2703
AspS9I	GGNCC	6 cut(s)	31, 70, 285, 527, 608, 1477
AsuHPI	GGTGA	4 cut(s)	532, 3137, 3257, 3364
AsuII	TTCGAA	3 cut(s)	575, 1616, 1646
AsuNHI	GCTAGC	2 cut(s)	2128, 2999
AvaI	CYCGRG	2 cut(s)	697, 1595
AvaII	GGWCC	5 cut(s)	31, 285, 527, 608, 1477
BaeGI	GKGCMC	1 cut(s)	1231
BalI	TGGCCA	1 cut(s)	1341
BamHI	GGATCC	1 cut(s)	1811
BanI	GGYRCC	2 cut(s)	39, 1768
BbsI	GAAGAC	5 cut(s)	336, 419, 755, 987, 3681
Bbv12I	GWGCWC	2 cut(s)	1231, 1333
BccI	CCATC	6 cut(s)	443, 1350, 1778, 2009, 3144, 3228
BceAI	ACGGC	4 cut(s)	123, 148, 1817, 3148
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	5 cut(s)	612, 981, 2313, 2462, 3261
BciVI	GTATCC	1 cut(s)	3127
BclI	TGATCA	1 cut(s)	2584
BcoDI	GTCTC	4 cut(s)	1271, 1536, 2431, 2529
BfaI	CTAG	9 cut(s)	215, 1137, 1604, 1716, 2052, 2129, 2865, 2934, 3000
BfmI	CTRYAG	2 cut(s)	2711, 2853
BfoI	RGCGCY	2 cut(s)	43, 393
BfuAI	ACCTGC	5 cut(s)	230, 508, 719, 2640, 3086
BfuI	GTATCC	1 cut(s)	3127
BmcAI	AGTACT	1 cut(s)	3209
Bme1390I	CCNGG	5 cut(s)	612, 981, 2313, 2462, 3261
Bme18I	GGWCC	5 cut(s)	31, 285, 527, 608, 1477
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmeT110I	CYCGRG	2 cut(s)	697, 1595
BmgT120I	GGNCC	6 cut(s)	31, 70, 285, 527, 608, 1477
BmiI	GGNNCC	8 cut(s)	41, 287, 855, 1049, 1721, 1770, 1813, 2847
BmrFI	CCNGG	5 cut(s)	612, 981, 2313, 2462, 3261
BmsI	GCATC	8 cut(s)	264, 315, 1819, 2032, 2153, 2227, 3113, 3353
BmtI	GCTAGC	2 cut(s)	2132, 3003
BpiI	GAAGAC	5 cut(s)	336, 419, 755, 987, 3681
BplI	GAGNNNNNCTC	2 cut(s)	3623, 3655
BpmI	CTGGAG	1 cut(s)	350
Bpu14I	TTCGAA	3 cut(s)	575, 1616, 1646
BpuEI	CTTGAG	4 cut(s)	1436, 2584, 2739, 2995
BsaAI	YACGTR	1 cut(s)	1325
BsaHI	GRCGYC	2 cut(s)	40, 162
BsaJI	CCNNGG	3 cut(s)	1071, 2312, 3250
BsaWI	WCCGGW	3 cut(s)	25, 1965, 2094
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 1013, 1348, 1972
Bse118I	RCCGGY	1 cut(s)	2594
Bse1I	ACTGG	8 cut(s)	287, 529, 930, 1625, 1815, 2185, 2749, 3120
Bse3DI	GCAATG	3 cut(s)	1480, 2710, 3396
BseAI	TCCGGA	1 cut(s)	2094
BseBI	CCWGG	5 cut(s)	612, 981, 2313, 2462, 3261
BseDI	CCNNGG	3 cut(s)	1071, 2312, 3250
BseGI	GGATG	7 cut(s)	454, 508, 1789, 2044, 2927, 3310, 3513
BseLI	CCNNNNNNNGG	4 cut(s)	25, 1013, 1348, 1972
BseMI	GCAATG	3 cut(s)	1480, 2710, 3396
BseMII	CTCAG	7 cut(s)	1475, 1509, 1675, 1755, 3675, 3684, 3689
BseNI	ACTGG	8 cut(s)	287, 529, 930, 1625, 1815, 2185, 2749, 3120
BsePI	GCGCGC	2 cut(s)	57, 59
BseRI	GAGGAG	4 cut(s)	87, 167, 1648, 2914
BseSI	GKGCMC	1 cut(s)	1231
BseX3I	CGGCCG	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	1007
BsgI	GTGCAG	1 cut(s)	2665
Bsh1236I	CGCG	5 cut(s)	21, 57, 59, 61, 262
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	3 cut(s)	71, 135, 1341
BshNI	GGYRCC	2 cut(s)	39, 1768
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	1231, 1333
BsiHKCI	CYCGRG	2 cut(s)	697, 1595
BsiSI	CCGG	4 cut(s)	26, 1966, 2095, 2595
BslFI	GGGAC	2 cut(s)	271, 577
BslI	CCNNNNNNNGG	4 cut(s)	25, 1013, 1348, 1972
BsmAI	GTCTC	4 cut(s)	1271, 1536, 2431, 2529
BsmFI	GGGAC	2 cut(s)	271, 577
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	3 cut(s)	71, 135, 1341
BsoBI	CYCGRG	2 cut(s)	697, 1595
Bsp119I	TTCGAA	3 cut(s)	575, 1616, 1646
Bsp1286I	GDGCHC	2 cut(s)	1231, 1333
Bsp13I	TCCGGA	1 cut(s)	2094
Bsp1407I	TGTACA	1 cut(s)	3486
BspANI	GGCC	3 cut(s)	71, 135, 1341
BspCNI	CTCAG	7 cut(s)	1474, 1510, 1674, 1756, 3676, 3685, 3690
BspEI	TCCGGA	1 cut(s)	2094
BspFNI	CGCG	5 cut(s)	21, 57, 59, 61, 262
BspHI	TCATGA	3 cut(s)	669, 2004, 2563
BspLI	GGNNCC	8 cut(s)	41, 287, 855, 1049, 1721, 1770, 1813, 2847
BspMAI	CTGCAG	2 cut(s)	2715, 2857
BspMI	ACCTGC	5 cut(s)	230, 508, 719, 2640, 3086
BspOI	GCTAGC	2 cut(s)	2132, 3003
BspPI	GGATC	5 cut(s)	1806, 1819, 2025, 2332, 2814
BspT104I	TTCGAA	3 cut(s)	575, 1616, 1646
BspT107I	GGYRCC	2 cut(s)	39, 1768
BsrBI	CCGCTC	1 cut(s)	207
BsrDI	GCAATG	3 cut(s)	1480, 2710, 3396
BsrFI	RCCGGY	1 cut(s)	2594
BsrGI	TGTACA	1 cut(s)	3486
BsrI	ACTGG	8 cut(s)	287, 529, 930, 1625, 1815, 2185, 2749, 3120
BssAI	RCCGGY	1 cut(s)	2594
BssECI	CCNNGG	3 cut(s)	1071, 2312, 3250
BssHII	GCGCGC	2 cut(s)	57, 59
BssNAI	GTATAC	2 cut(s)	2353, 3522
BssNI	GRCGYC	2 cut(s)	40, 162
BssT1I	CCWWGG	2 cut(s)	1071, 3250
Bst1107I	GTATAC	2 cut(s)	2353, 3522
Bst2UI	CCWGG	5 cut(s)	612, 981, 2313, 2462, 3261
Bst6I	CTCTTC	3 cut(s)	50, 3497, 3552
BstACI	GRCGYC	2 cut(s)	40, 162
BstAPI	GCANNNNNTGC	2 cut(s)	720, 2996
BstAUI	TGTACA	1 cut(s)	3486
BstBAI	YACGTR	1 cut(s)	1325
BstBI	TTCGAA	3 cut(s)	575, 1616, 1646
BstC8I	GCNNGC	8 cut(s)	59, 61, 665, 1282, 1911, 2130, 3001, 3161
BstEII	GGTNACC	2 cut(s)	975, 3263
BstF5I	GGATG	7 cut(s)	454, 508, 1789, 2044, 2927, 3310, 3513
BstFNI	CGCG	5 cut(s)	21, 57, 59, 61, 262
BstH2I	RGCGCY	2 cut(s)	43, 393
BstHHI	GCGC	7 cut(s)	42, 59, 61, 63, 264, 392, 2703
BstMAI	GTCTC	4 cut(s)	1271, 1536, 2431, 2529
BstMCI	CGRYCG	1 cut(s)	136
BstNI	CCWGG	5 cut(s)	612, 981, 2313, 2462, 3261
BstNSI	RCATGY	6 cut(s)	1148, 1245, 1781, 2282, 2580, 2696
BstPI	GGTNACC	2 cut(s)	975, 3263
BstSCI	CCNGG	5 cut(s)	610, 979, 2311, 2460, 3259
BstSFI	CTRYAG	2 cut(s)	2711, 2853
BstSLI	GKGCMC	1 cut(s)	1231
BstSNI	TACGTA	1 cut(s)	1325
BstUI	CGCG	5 cut(s)	21, 57, 59, 61, 262
BstV2I	GAAGAC	5 cut(s)	336, 419, 755, 987, 3681
BstX2I	RGATCY	1 cut(s)	1811
BstXI	CCANNNNNNTGG	1 cut(s)	885
BstYI	RGATCY	1 cut(s)	1811
BstZ17I	GTATAC	2 cut(s)	2353, 3522
BstZI	CGGCCG	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	3127
BsuRI	GGCC	3 cut(s)	71, 135, 1341
BtsCI	GGATG	7 cut(s)	454, 508, 1789, 2044, 2927, 3310, 3513
BtsI	GCAGTG	3 cut(s)	367, 1261, 2914
BveI	ACCTGC	5 cut(s)	230, 508, 719, 2640, 3086
Cac8I	GCNNGC	8 cut(s)	59, 61, 665, 1282, 1911, 2130, 3001, 3161
CaiI	CAGNNNCTG	2 cut(s)	1696, 3347
CciI	TCATGA	3 cut(s)	669, 2004, 2563
CfoI	GCGC	7 cut(s)	42, 59, 61, 63, 264, 392, 2703
Cfr10I	RCCGGY	1 cut(s)	2594
Cfr13I	GGNCC	6 cut(s)	31, 70, 285, 527, 608, 1477
CseI	GACGC	3 cut(s)	170, 468, 760
CsiI	ACCWGGT	1 cut(s)	3259
Csp6I	GTAC	8 cut(s)	1148, 1441, 1448, 1470, 1835, 2742, 3208, 3487
CspCI	CAANNNNNGTGG	2 cut(s)	1761, 1796
CviQI	GTAC	8 cut(s)	1148, 1441, 1448, 1470, 1835, 2742, 3208, 3487
DinI	GGCGCC	1 cut(s)	41
DraI	TTTAAA	5 cut(s)	654, 828, 949, 2139, 2608
DriI	GACNNNNNGTC	1 cut(s)	166
EaeI	YGGCCR	2 cut(s)	133, 1339
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	3 cut(s)	50, 3497, 3552
Eam1105I	GACNNNNNGTC	1 cut(s)	166
EarI	CTCTTC	3 cut(s)	50, 3497, 3552
EclXI	CGGCCG	1 cut(s)	133
Eco105I	TACGTA	1 cut(s)	1325
Eco130I	CCWWGG	2 cut(s)	1071, 3250
Eco32I	GATATC	1 cut(s)	3082
Eco47I	GGWCC	5 cut(s)	31, 285, 527, 608, 1477
Eco52I	CGGCCG	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	399, 1518
Eco88I	CYCGRG	2 cut(s)	697, 1595
Eco91I	GGTNACC	2 cut(s)	975, 3263
EcoO65I	GGTNACC	2 cut(s)	975, 3263
EcoRI	GAATTC	1 cut(s)	1153
EcoRII	CCWGG	5 cut(s)	610, 979, 2311, 2460, 3259
EcoRV	GATATC	1 cut(s)	3082
EcoT14I	CCWWGG	2 cut(s)	1071, 3250
EgeI	GGCGCC	1 cut(s)	41
EheI	GGCGCC	1 cut(s)	41
ErhI	CCWWGG	2 cut(s)	1071, 3250
FalI	AAGNNNNNCTT	2 cut(s)	3425, 3457
FaqI	GGGAC	2 cut(s)	271, 577
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	2584
FblI	GTMKAC	5 cut(s)	1018, 1797, 2352, 3366, 3521
FokI	GGATG	7 cut(s)	461, 515, 1796, 2051, 2914, 3297, 3520
FspBI	CTAG	9 cut(s)	215, 1137, 1604, 1716, 2052, 2129, 2865, 2934, 3000
GlaI	GCGC	7 cut(s)	41, 58, 60, 62, 263, 391, 2702
GsaI	CCCAGC	1 cut(s)	1011
GsuI	CTGGAG	1 cut(s)	350
HaeII	RGCGCY	2 cut(s)	43, 393
HaeIII	GGCC	3 cut(s)	71, 135, 1341
HapII	CCGG	4 cut(s)	26, 1966, 2095, 2595
HgaI	GACGC	3 cut(s)	170, 468, 760
HhaI	GCGC	7 cut(s)	42, 59, 61, 63, 264, 392, 2703
Hin1I	GRCGYC	2 cut(s)	40, 162
Hin6I	GCGC	7 cut(s)	40, 57, 59, 61, 262, 390, 2701
HinP1I	GCGC	7 cut(s)	40, 57, 59, 61, 262, 390, 2701
HincII	GTYRAC	3 cut(s)	379, 1019, 2458
HindII	GTYRAC	3 cut(s)	379, 1019, 2458
HpaI	GTTAAC	2 cut(s)	379, 2458
HpaII	CCGG	4 cut(s)	26, 1966, 2095, 2595
HphI	GGTGA	4 cut(s)	532, 3137, 3257, 3364
Hpy99I	CGWCG	5 cut(s)	164, 233, 325, 484, 592
HpyAV	CCTTC	8 cut(s)	812, 978, 1623, 2455, 2539, 2659, 2859, 3385
HpyCH4IV	ACGT	4 cut(s)	639, 1117, 1324, 2740
HpySE526I	ACGT	4 cut(s)	639, 1117, 1324, 2740
Hsp92I	GRCGYC	2 cut(s)	40, 162
HspAI	GCGC	7 cut(s)	40, 57, 59, 61, 262, 390, 2701
KasI	GGCGCC	1 cut(s)	39
Kpn2I	TCCGGA	1 cut(s)	2094
Ksp22I	TGATCA	1 cut(s)	2584
KspAI	GTTAAC	2 cut(s)	379, 2458
LmnI	GCTCC	6 cut(s)	161, 253, 331, 1250, 2097, 2668
LweI	GCATC	8 cut(s)	264, 315, 1819, 2032, 2153, 2227, 3113, 3353
MabI	ACCWGGT	1 cut(s)	3259
MaeI	CTAG	9 cut(s)	215, 1137, 1604, 1716, 2052, 2129, 2865, 2934, 3000
MaeII	ACGT	4 cut(s)	639, 1117, 1324, 2740
MaeIII	GTNAC	9 cut(s)	301, 520, 539, 975, 1375, 1924, 2157, 3263, 3651
MauBI	CGCGCGCG	1 cut(s)	57
MbiI	CCGCTC	1 cut(s)	207
MfeI	CAATTG	2 cut(s)	559, 3551
MflI	RGATCY	1 cut(s)	1811
MhlI	GDGCHC	2 cut(s)	1231, 1333
MlsI	TGGCCA	1 cut(s)	1341
MluNI	TGGCCA	1 cut(s)	1341
Mly113I	GGCGCC	1 cut(s)	40
MlyI	GAGTC	5 cut(s)	1565, 1653, 3307, 3521, 3695
MmeI	TCCRAC	6 cut(s)	183, 205, 222, 264, 1847, 2697
Mox20I	TGGCCA	1 cut(s)	1341
MroI	TCCGGA	1 cut(s)	2094
MroXI	GAANNNNTTC	4 cut(s)	868, 1612, 1642, 3062
MscI	TGGCCA	1 cut(s)	1341
MslI	CAYNNNNRTG	3 cut(s)	1782, 2691, 3405
Msp20I	TGGCCA	1 cut(s)	1341
MspA1I	CMGCKG	3 cut(s)	150, 308, 2302
MspI	CCGG	4 cut(s)	26, 1966, 2095, 2595
MspR9I	CCNGG	5 cut(s)	612, 981, 2313, 2462, 3261
MunI	CAATTG	2 cut(s)	559, 3551
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	5 cut(s)	612, 981, 2313, 2462, 3261
MvnI	CGCG	5 cut(s)	21, 57, 59, 61, 262
NarI	GGCGCC	1 cut(s)	40
NheI	GCTAGC	2 cut(s)	2128, 2999
NlaIV	GGNNCC	8 cut(s)	41, 287, 855, 1049, 1721, 1770, 1813, 2847
NmuCI	GTSAC	4 cut(s)	520, 1924, 2157, 3263
NspI	RCATGY	6 cut(s)	1148, 1245, 1781, 2282, 2580, 2696
NspV	TTCGAA	3 cut(s)	575, 1616, 1646
PaeR7I	CTCGAG	1 cut(s)	697
PagI	TCATGA	3 cut(s)	669, 2004, 2563
PaqCI	CACCTGC	2 cut(s)	230, 508
PauI	GCGCGC	2 cut(s)	57, 59
PciI	ACATGT	2 cut(s)	1777, 2278
PcsI	WCGNNNNNNNCGW	4 cut(s)	195, 237, 889, 2266
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	4 cut(s)	868, 1612, 1642, 3062
PflFI	GACNNNGTC	1 cut(s)	3261
PflMI	CCANNNNNTGG	1 cut(s)	1348
PleI	GAGTC	5 cut(s)	1564, 1653, 3306, 3521, 3694
PluTI	GGCGCC	1 cut(s)	43
PpsI	GAGTC	5 cut(s)	1564, 1653, 3306, 3521, 3694
Ppu21I	YACGTR	1 cut(s)	1325
PscI	ACATGT	2 cut(s)	1777, 2278
PshBI	ATTAAT	1 cut(s)	3336
PsiI	TTATAA	3 cut(s)	369, 2063, 2495
Psp1406I	AACGTT	1 cut(s)	1117
Psp6I	CCWGG	5 cut(s)	610, 979, 2311, 2460, 3259
PspEI	GGTNACC	2 cut(s)	975, 3263
PspFI	CCCAGC	1 cut(s)	1007
PspGI	CCWGG	5 cut(s)	610, 979, 2311, 2460, 3259
PspN4I	GGNNCC	8 cut(s)	41, 287, 855, 1049, 1721, 1770, 1813, 2847
PspPI	GGNCC	6 cut(s)	31, 70, 285, 527, 608, 1477
PspXI	VCTCGAGB	1 cut(s)	697
PstI	CTGCAG	2 cut(s)	2715, 2857
PstNI	CAGNNNCTG	2 cut(s)	1696, 3347
PsuI	RGATCY	1 cut(s)	1811
PsyI	GACNNNGTC	1 cut(s)	3261
PteI	GCGCGC	2 cut(s)	57, 59
PvuII	CAGCTG	2 cut(s)	308, 2302
RsaI	GTAC	8 cut(s)	1149, 1442, 1449, 1471, 1836, 2743, 3209, 3488
RsaNI	GTAC	8 cut(s)	1148, 1441, 1448, 1470, 1835, 2742, 3208, 3487
RseI	CAYNNNNRTG	3 cut(s)	1782, 2691, 3405
SalI	GTCGAC	1 cut(s)	1017
Sau96I	GGNCC	6 cut(s)	31, 70, 285, 527, 608, 1477
ScaI	AGTACT	1 cut(s)	3209
SchI	GAGTC	5 cut(s)	1565, 1653, 3307, 3521, 3695
ScrFI	CCNGG	5 cut(s)	612, 981, 2313, 2462, 3261
SduI	GDGCHC	2 cut(s)	1231, 1333
SexAI	ACCWGGT	1 cut(s)	3259
SfaNI	GCATC	8 cut(s)	264, 315, 1819, 2032, 2153, 2227, 3113, 3353
SfcI	CTRYAG	2 cut(s)	2711, 2853
SfoI	GGCGCC	1 cut(s)	41
Sfr274I	CTCGAG	1 cut(s)	697
SfuI	TTCGAA	3 cut(s)	575, 1616, 1646
SinI	GGWCC	5 cut(s)	31, 285, 527, 608, 1477
SlaI	CTCGAG	1 cut(s)	697
SmiI	ATTTAAAT	1 cut(s)	828
SmiMI	CAYNNNNRTG	3 cut(s)	1782, 2691, 3405
SmlI	CTYRAG	5 cut(s)	697, 1451, 2599, 2754, 3010
SmoI	CTYRAG	5 cut(s)	697, 1451, 2599, 2754, 3010
SnaBI	TACGTA	1 cut(s)	1325
SspDI	GGCGCC	1 cut(s)	39
SspMI	CTAG	9 cut(s)	215, 1137, 1604, 1716, 2052, 2129, 2865, 2934, 3000
StyD4I	CCNGG	5 cut(s)	610, 979, 2311, 2460, 3259
StyI	CCWWGG	2 cut(s)	1071, 3250
SwaI	ATTTAAAT	1 cut(s)	828
TaiI	ACGT	4 cut(s)	642, 1120, 1327, 2743
TatI	WGTACW	5 cut(s)	1147, 1447, 1469, 3207, 3486
TauI	GCSGC	4 cut(s)	21, 138, 2048, 3681
TseFI	GTSAC	4 cut(s)	520, 1924, 2157, 3263
Tsp45I	GTSAC	4 cut(s)	520, 1924, 2157, 3263
TspGWI	ACGGA	2 cut(s)	1490, 2242
Tth111I	GACNNNGTC	1 cut(s)	3261
Van91I	CCANNNNNTGG	1 cut(s)	1348
VneI	GTGCAC	1 cut(s)	1227
VpaK11BI	GGWCC	5 cut(s)	31, 285, 527, 608, 1477
VspI	ATTAAT	1 cut(s)	3336
XapI	RAATTY	4 cut(s)	823, 1153, 1627, 2134
XbaI	TCTAGA	2 cut(s)	2864, 2933
XceI	RCATGY	6 cut(s)	1148, 1245, 1781, 2282, 2580, 2696
XcmI	CCANNNNNNNNNTGG	2 cut(s)	521, 3257
XhoI	CTCGAG	1 cut(s)	697
XmiI	GTMKAC	5 cut(s)	1018, 1797, 2352, 3366, 3521
XmnI	GAANNNNTTC	4 cut(s)	868, 1612, 1642, 3062
XspI	CTAG	9 cut(s)	215, 1137, 1604, 1716, 2052, 2129, 2865, 2934, 3000
ZrmI	AGTACT	1 cut(s)	3209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.