Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011934

Physical Location & Seq

Genomic Coordinates Forward (+)

934982 .. 942728

Gene Structure 7747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1010300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3630 bp

ATGCGGAAGAAAATGCGAAGGAAACGCCGCGTTCCGGAGGTCCTCCGGAGGCTATTCGGCAAACGGGCGCGAACATTGTCCGACACCATCGTCTCCTTGCTCCCTCCCCATTCGTCGTCGTCAGTCCCCGCCGACTGTCGTTTCTGCAAGGGCCGCCGTTGCCTCAGCTGCACCGCACCTGACGGCTTGTCGTTTCTCCTCCGACCTGACGACCCCTCCGATTACCGCCACCTCCTCAACCATGGATACGTCGTGGTTGCGAAAAATGCACCTGCCATCACCCGCTTTTCCCCTGACTCTCACTGGTCCCAAATTGAGATTGTTAGAGCAGTGATTGAAGCGATGATGGTTGAGCAACCTGTGTCTTCCAATGTGATATGCAGTGGTTATGATAAGTCTAATCAGTCAAGCGGCATTGTGGAGCTTCTAACTTCGTCGGCTTGGTGTCTTCTCTTAGAAAGGGTTGGGGATGGCATTATGGTTTATTTACTAAGGAATGCATCGATATTTTTGCCACTTCTGCGTACGAACCACCAGCAGGTCACAGGTCTGCCAATCAGTCAGTTGTGTCCGAAGAAGTTGAAGCGTGTGCAGCAGCCACAGTGGCAACAGTCATTGCCTGAGTCGTATGGATCCCGGAAAAAGAGGGAAAGAGAAGATAATGTACACTCATTGTTGAAGAGACAGCACCTTAGTTCTTTTAGCAGTGATAAAACCATTGGTTCTGCTGCCTGCAGTGGCTGCTGCAGTGTTTGTAAGGATAAGCATAGTCATAATGGAACCAGCACGTTTACTGACAGTTATGAAGGTGATTTAAATAAGGAACTTGAACAGGGTTCCCAAAGGCTTAAAAAGCGTGCAAGGCCATTTAGTTGGCAGCGCCACAAGAAGCGTAGGCTATTACCTTCTCAAGAAACCAGCTTTCAGGATCCTTCCAAAACAATTATCGGTGATAAGGAAAGCTTATCTAGCAGGCTTTCATATTGCTCAGTTCATCATCATAAAAAGTGCTCTTGTTTGGGGTTACGCATTCCAAGAAAGGTTGCCAAAGGGGCTCAAATTGACAGAAAATTCATGTTCTTTAACTTGGAACAGTCTTCATCAGTTTTCCCAAGAAAACATGTTCTGAATTCTTTAAAGCCAAATTCTGTTGGTTCAGAATTTCTTGTTAAGAGTATTTTTGGCATATCCGACACAGAAAGTGCTATGTCAAATATATGTCCTCGTGGAAGTGGTCTTTGTCTCACGGGATCAGCATGCCTGTATCATTCCCTTGTTAAGCTGCTTAAGACTCTCATACGCAGAGCTCAACATTGCCATAGTTTGAGATTATTGGACAAGCATTGTGGTGTTTCATCTCCAGATGCTACTGATTCTCACTCCGAGGCTATTAAGTCTTATTGCTTGAAAAGTCAGGTGGTCTCGTTTATATGGGCTGTTTGTAGGAGAATCATTCCTTCAGATTTGCTAGGAACTGCTTCTAATTGGAGAATATTGAGGAGAAATATTTCGAAGTTCATACATCTTAGAAGATTTGAAAATTTTTCTTTACGGCAATGTATGCATAAACTGAAAACATCTAGGTTCCCATTTCTATCAAATAAACAGTATTTCTGCGGCATGAATAATGAGGCAGTAAAAGACGTGGGTGGAAAAGGATTAGACATTCATAAAGGATTCCCTAAATTGAATGATGCTGCACATATTGTTAAACAAAAAGTCTTGAAAAGCTGGATTTATTGGTTCTTTTCATCCATAATTGTCCCTTTGTTGCAAGTCAACTTCTATGTCACCGAAAGTGAGCACGGGAGGCAAGATGTATATTACTATCAAAAGTCAGTTTGGGAGAAGGTGAAGAATAAGACTATCAGTTGCATGAAAGATCAGAGGTATTATTACTTGGATGATGCAACAACTAGAAGGATTATAAGAAAAAGATTATTTGGTTTTTCAAAGCTTCGGATTTGTCCAAAAGAGTGTGGAGTGCGGTTGCTAGCAAATTTAAAAGCATCATCAAAAATGCCACAAAAGGAGTTCAGTTTGGCAGAGCAGTCCAGTGGCATAGTAAGAAGGAAAAAAAGTCTTCAGAAAAGGGTCAAATTTGAATATTTCAAGTCTGTCAATAGCGTTCTTCGTGATACGCATGCTGTTCTAAAAGCTATACGGTTGAAGGAGCCAGAGAAGTTAGGTTCATCAGTTTTTGATTACAATGATGTCTATCGAAAGTTATGTCCATTTGTGATGGGTTTAAAGAATGGACCGACAATGATGCCTGATGTATTTATTGTTGTTTCTGATGTGTCAAAAGCCTATGATACTGTTGACCAGGATAAGCTGCTTTGTGTGATGAAAGATGCCATAAGAATGGATGAATATTTTCTAAAACATTCATATGAAGTTCTTTGCACAAAAGAATTTTTATGGGTTCATGAGAATCCTGCATTATTGGATCAACATACCAGCTTGAGGTTTACATCTTCTGCCTTACACCGATCATTGCAAAGTGTCCTTGTTAATCAGGAATATAGCAGGTCCATGAAGAAGGAGGAACTCTTTTTTAATCTAAATCAACATGTCAAGCGCAATGTGCTGCAGTTAGATAAAAAGTTTTATCTGCAAGGTGTAGGTATTCCTCAAGGAAGTGTTTTGTCTTCTTTGCTTTGTTCATTATACTATGGACATTTGGATAGGAATGTGATCTTTCCGTTTCTTGAAAAAACTTGGGAACCCGTGACAATAGATTCATCAAGAGGACATAATTTTGGAGATGCTTCTGCTGCACAGAGTGCTAATGAGGATGGCATTGCCTCAACCTCTACTTATTTTCTACTAAGATTTATTGATGACTTTCTTTTCATCTCAACCTCAAGGAATCAGGCTGCTGGCTTCTTCACCAGGTTGCAAAGAGGATTTCGGGATTATAATTGTTACATGAATGAAAAGAAGTTCTGTGTGAATTTCGATATGCAACACATGCCTGGGATACCATCAAGCAGGGTGTATCTTGGTGAAGACGGCATCTCATTCATTCGATGGAGTGGCTTGCTTCTTAATTCTTGCACTCTTGAAGTTCAGGCCGACTACACAAAGTACTGGAACAACCATCTACGTTCCACTCTTACTGTCAGCTGGCAAGACCAACCAGGTCGTCATTTGAAGAAAAAATTGTGTGACTTTATGAAACCTAAATGCCATCCAATATTCTTTGATTCCAACATCAATTCGGCATCTGTTGTGAGATTAAATATCTACCAAGCATTCTTGTTATGTGCAATGAAGTTCCATTGTTATGTTCGTGACTTATCATACATCTGGAAACTTCGCCCTAGATCGTATGCTAACATTATCAAGAGATCTTTGAGGTATATGCATGTGCTCATAAAGAGAAGGATGCGTTCTGTGCATACTGATTTCCACCCAATTCTTCAACTGGAAAAGGGAGAGGTTGAATGGCTTGGTTTATATGCTTATATCCAAGTACTGAAGAGAAAGCAATCGCGACATAAGGAGTTGATCTCGCTGTTGGCGTCTAAGTTGTTAAAGCATACAATATCGGGGTCTGTGTCTTCTCAACTAAGGTATGCAGTCGACAGATCACATTCCTCTGTAATGTGGAAGATCAAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000333 GO:0000723 GO:0003674 GO:0003676 GO:0003677 GO:0003720 GO:0003721 GO:0003723 GO:0003824 GO:0003964 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007004 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009888 GO:0009987 GO:0010073 GO:0010449 GO:0010833 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019827 GO:0022622 GO:0032200 GO:0032501 GO:0032502 GO:0032991 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035266 GO:0040007 GO:0042162 GO:0042575 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050000 GO:0051179 GO:0051276 GO:0051640 GO:0051641 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070034 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05165 ko05166 ko05200 ko05225 ko05226 map05165 map05166 map05200 map05225 map05226

Pfam Domains

Protein Families

RVT_1 Telomerase_RBD

Protein Analysis

1210

Amino Acids

139.37

Weight (kDa)

9.78

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Telomerase_RBD	PF12009	472 - 625	7.7e-37	Telomerase ribonucleoprotein complex - RNA binding domain
RVT_1	PF00078	862 - 985	8.1e-06	Reverse transcriptase (RNA-dependent DNA polymerase)
TERT_C	PF21399	1050 - 1173	1.7e-19	Telomerase reverse transcriptase, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16850 AT5G16850
fragaria_vesca	FvH4_7g01000 FvH4_7g01000
malus_domestica	MD07G1010300.v1.1
prunus_persica	Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0315901
rosa_laevigata	RLG00000030725
rosa_roxburghii	Rroxscaffold_4G00331320
rosa_rugosa	Rorug01G0006900
rosa_samantha	Rh1AG017600 Rh1BG010500 Rh1CG015000 Rh1DG010600
rosa_wichuraiana	Rw1G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1928, 2922
AarI	CACCTGC	1 cut(s)	280
AasI	GACNNNNNNGTC	1 cut(s)	89
Acc36I	ACCTGC	3 cut(s)	280, 529, 2520
AccI	GTMKAC	1 cut(s)	3588
AccII	CGCG	3 cut(s)	30, 70, 3499
AccIII	TCCGGA	2 cut(s)	34, 45
AclWI	GGATC	6 cut(s)	627, 640, 923, 936, 1258, 2457
AcsI	RAATTY	9 cut(s)	1070, 1129, 1144, 1160, 1540, 1999, 2099, 2414, 2956
AcuI	CTGAAG	3 cut(s)	1443, 2069, 3503
AcyI	GRCGYC	1 cut(s)	3527
AdeI	CACNNNGTG	1 cut(s)	2786
AfaI	GTAC	4 cut(s)	526, 666, 3092, 3480
AfiI	CCNNNNNNNGG	3 cut(s)	34, 538, 2466
AflII	CTTAAG	1 cut(s)	1286
AflIII	ACRYGT	2 cut(s)	1120, 2572
AhdI	GACNNNNNGTC	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	1645
AjnI	CCWGG	4 cut(s)	2325, 2894, 2977, 3142
Alw21I	GWGCWC	4 cut(s)	1013, 1309, 1806, 3378
Alw26I	GTCTC	4 cut(s)	97, 676, 1247, 1426
AlwI	GGATC	6 cut(s)	627, 640, 923, 936, 1258, 2457
AlwNI	CAGNNNCTG	1 cut(s)	741
Aor13HI	TCCGGA	2 cut(s)	34, 45
AoxI	GGCC	3 cut(s)	151, 863, 3075
ApoI	RAATTY	9 cut(s)	1070, 1129, 1144, 1160, 1540, 1999, 2099, 2414, 2956
ArsI	GACNNNNNNTTYG	2 cut(s)	2215, 2247
Asp700I	GAANNNNTTC	3 cut(s)	1477, 1507, 2376
AspLEI	GCGC	3 cut(s)	70, 882, 2583
AspS9I	GGNCC	5 cut(s)	40, 151, 306, 2258, 2532
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	7 cut(s)	271, 821, 962, 1783, 1864, 2884, 3020
AsuII	TTCGAA	1 cut(s)	1511
AsuNHI	GCTAGC	1 cut(s)	1993
AvaII	GGWCC	4 cut(s)	40, 306, 2258, 2532
BamHI	GGATCC	2 cut(s)	632, 928
BanII	GRGCYC	2 cut(s)	1057, 1309
BarI	GAAGNNNNNNTAC	2 cut(s)	648, 680
BauI	CACGAG	1 cut(s)	1224
BbsI	GAAGAC	7 cut(s)	357, 440, 1089, 2075, 2643, 3018, 3558
Bbv12I	GWGCWC	4 cut(s)	1013, 1309, 1806, 3378
BbvCI	CCTCAGC	1 cut(s)	164
BceAI	ACGGC	4 cut(s)	141, 199, 1568, 3031
BcgI	CGANNNNNNTGC	4 cut(s)	493, 527, 2251, 2285
BciT130I	CCWGG	4 cut(s)	2327, 2896, 2979, 3144
BciVI	GTATCC	2 cut(s)	239, 2976
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	4 cut(s)	97, 676, 1247, 1426
BfaI	CTAG	6 cut(s)	969, 1469, 1581, 1917, 1994, 3327
BfmI	CTRYAG	3 cut(s)	733, 745, 2591
BfoI	RGCGCY	1 cut(s)	883
BfrI	CTTAAG	1 cut(s)	1286
BfuAI	ACCTGC	3 cut(s)	280, 529, 2520
BfuI	GTATCC	2 cut(s)	239, 2976
BglI	GCCNNNNNGGC	2 cut(s)	604, 1052
BglII	AGATCT	1 cut(s)	3353
BmcAI	AGTACT	2 cut(s)	3092, 3480
Bme1390I	CCNGG	5 cut(s)	637, 2327, 2896, 2979, 3144
Bme18I	GGWCC	4 cut(s)	40, 306, 2258, 2532
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	1645
BmgT120I	GGNCC	5 cut(s)	40, 151, 306, 2258, 2532
BmiI	GGNNCC	8 cut(s)	308, 634, 781, 838, 930, 1586, 2175, 2727
BmrFI	CCNGG	5 cut(s)	637, 2327, 2896, 2979, 3144
BmtI	GCTAGC	1 cut(s)	1997
BpiI	GAAGAC	7 cut(s)	357, 440, 1089, 2075, 2643, 3018, 3558
BplI	GAGNNNNNCTC	2 cut(s)	3500, 3532
BpmI	CTGGAG	1 cut(s)	1344
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	1511
BpuEI	CTTGAG	4 cut(s)	894, 2485, 2619, 2851
BpuMI	CCSGG	1 cut(s)	637
Bsa29I	ATCGAT	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	2217
BsaHI	GRCGYC	1 cut(s)	3527
BsaI	GGTCTC	1 cut(s)	1426
BsaJI	CCNNGG	3 cut(s)	241, 1383, 2978
BsaWI	WCCGGW	2 cut(s)	34, 45
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 538, 2466
Bse1I	ACTGG	4 cut(s)	308, 2055, 3098, 3435
Bse3DI	GCAATG	7 cut(s)	614, 1312, 1562, 2495, 2590, 2802, 3279
Bse8I	GATNNNNATC	1 cut(s)	2217
BseAI	TCCGGA	2 cut(s)	34, 45
BseBI	CCWGG	4 cut(s)	2327, 2896, 2979, 3144
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	241, 1383, 2978
BseGI	GGATG	7 cut(s)	475, 1751, 1909, 2374, 2803, 3193, 3396
BseJI	GATNNNNATC	1 cut(s)	2217
BseLI	CCNNNNNNNGG	3 cut(s)	34, 538, 2466
BseMI	GCAATG	7 cut(s)	614, 1312, 1562, 2495, 2590, 2802, 3279
BseMII	CTCAG	3 cut(s)	178, 612, 1002
BseNI	ACTGG	4 cut(s)	308, 2055, 3098, 3435
BseRI	GAGGAG	3 cut(s)	188, 224, 1513
BsgI	GTGCAG	4 cut(s)	154, 611, 1683, 2763
Bsh1236I	CGCG	3 cut(s)	30, 70, 3499
BshFI	GGCC	3 cut(s)	153, 865, 3077
BshVI	ATCGAT	1 cut(s)	503
BsiHKAI	GWGCWC	4 cut(s)	1013, 1309, 1806, 3378
BsiSI	CCGG	3 cut(s)	35, 46, 637
BsiWI	CGTACG	1 cut(s)	524
BslFI	GGGAC	3 cut(s)	110, 292, 1748
BslI	CCNNNNNNNGG	3 cut(s)	34, 538, 2466
BsmAI	GTCTC	4 cut(s)	97, 676, 1247, 1426
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	3 cut(s)	110, 292, 1748
BsmI	GAATGC	3 cut(s)	502, 1029, 3257
BsnI	GGCC	3 cut(s)	153, 865, 3077
Bso31I	GGTCTC	1 cut(s)	1426
Bsp119I	TTCGAA	1 cut(s)	1511
Bsp1286I	GDGCHC	5 cut(s)	1013, 1057, 1309, 1806, 3378
Bsp13I	TCCGGA	2 cut(s)	34, 45
Bsp1407I	TGTACA	1 cut(s)	664
Bsp19I	CCATGG	1 cut(s)	241
Bsp68I	TCGCGA	1 cut(s)	3499
BspANI	GGCC	3 cut(s)	153, 865, 3077
BspCNI	CTCAG	3 cut(s)	177, 613, 1001
BspDI	ATCGAT	1 cut(s)	503
BspEI	TCCGGA	2 cut(s)	34, 45
BspFNI	CGCG	3 cut(s)	30, 70, 3499
BspHI	TCATGA	1 cut(s)	2428
BspLI	GGNNCC	8 cut(s)	308, 634, 781, 838, 930, 1586, 2175, 2727
BspMAI	CTGCAG	3 cut(s)	737, 749, 2595
BspMI	ACCTGC	3 cut(s)	280, 529, 2520
BspOI	GCTAGC	1 cut(s)	1997
BspPI	GGATC	6 cut(s)	627, 640, 923, 936, 1258, 2457
BspT104I	TTCGAA	1 cut(s)	1511
BspTI	CTTAAG	1 cut(s)	1286
BspTNI	GGTCTC	1 cut(s)	1426
BsrDI	GCAATG	7 cut(s)	614, 1312, 1562, 2495, 2590, 2802, 3279
BsrGI	TGTACA	1 cut(s)	664
BsrI	ACTGG	4 cut(s)	308, 2055, 3098, 3435
BssECI	CCNNGG	3 cut(s)	241, 1383, 2978
BssNI	GRCGYC	1 cut(s)	3527
BssSI	CACGAG	1 cut(s)	1224
BssT1I	CCWWGG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	1224
Bst2UI	CCWGG	4 cut(s)	2327, 2896, 2979, 3144
Bst4CI	ACNGT	9 cut(s)	137, 603, 612, 800, 1095, 1608, 2166, 2320, 3124
Bst6I	CTCTTC	2 cut(s)	674, 3479
BstACI	GRCGYC	1 cut(s)	3527
BstAFI	CTTAAG	1 cut(s)	1286
BstAPI	GCANNNNNTGC	4 cut(s)	741, 1561, 2786, 2974
BstAUI	TGTACA	1 cut(s)	664
BstBI	TTCGAA	1 cut(s)	1511
BstC8I	GCNNGC	9 cut(s)	733, 858, 974, 1258, 1995, 2145, 2884, 3044, 3131
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	7 cut(s)	475, 1751, 1909, 2374, 2803, 3193, 3396
BstFNI	CGCG	3 cut(s)	30, 70, 3499
BstH2I	RGCGCY	1 cut(s)	883
BstHHI	GCGC	3 cut(s)	70, 882, 2583
BstMAI	GTCTC	4 cut(s)	97, 676, 1247, 1426
BstNI	CCWGG	4 cut(s)	2327, 2896, 2979, 3144
BstNSI	RCATGY	6 cut(s)	1124, 1260, 2147, 2576, 2977, 3374
BstSCI	CCNGG	5 cut(s)	635, 2325, 2894, 2977, 3142
BstSFI	CTRYAG	3 cut(s)	733, 745, 2591
BstUI	CGCG	3 cut(s)	30, 70, 3499
BstV2I	GAAGAC	7 cut(s)	357, 440, 1089, 2075, 2643, 3018, 3558
BstX2I	RGATCY	3 cut(s)	632, 928, 3353
BstXI	CCANNNNNNTGG	2 cut(s)	873, 2365
BstYI	RGATCY	3 cut(s)	632, 928, 3353
Bsu15I	ATCGAT	1 cut(s)	503
BsuI	GTATCC	2 cut(s)	239, 2976
BsuRI	GGCC	3 cut(s)	153, 865, 3077
BsuTUI	ATCGAT	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	356
BtrI	CACGTC	1 cut(s)	1645
BtsCI	GGATG	7 cut(s)	475, 1751, 1909, 2374, 2803, 3193, 3396
BtsI	GCAGTG	5 cut(s)	336, 388, 712, 742, 754
BtsIMutI	CAGTG	8 cut(s)	301, 336, 388, 608, 712, 742, 754, 2062
BtuMI	TCGCGA	1 cut(s)	3499
BveI	ACCTGC	3 cut(s)	280, 529, 2520
Cac8I	GCNNGC	9 cut(s)	733, 858, 974, 1258, 1995, 2145, 2884, 3044, 3131
CaiI	CAGNNNCTG	1 cut(s)	741
CciI	TCATGA	1 cut(s)	2428
CfoI	GCGC	3 cut(s)	70, 882, 2583
Cfr13I	GGNCC	5 cut(s)	40, 151, 306, 2258, 2532
ClaI	ATCGAT	1 cut(s)	503
CseI	GACGC	1 cut(s)	3516
CsiI	ACCWGGT	2 cut(s)	2894, 3142
Csp6I	GTAC	4 cut(s)	525, 665, 3091, 3479
CspCI	CAANNNNNGTGG	2 cut(s)	1327, 1362
CviQI	GTAC	4 cut(s)	525, 665, 3091, 3479
DraI	TTTAAA	4 cut(s)	816, 1137, 2004, 2250
DraIII	CACNNNGTG	1 cut(s)	2786
DrdI	GACNNNNNNGTC	1 cut(s)	89
DriI	GACNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	674, 3479
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	2 cut(s)	674, 3479
Ecl136II	GAGCTC	1 cut(s)	1307
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	2 cut(s)	1057, 1309
Eco31I	GGTCTC	1 cut(s)	1426
Eco47I	GGWCC	4 cut(s)	40, 306, 2258, 2532
Eco53kI	GAGCTC	1 cut(s)	1307
Eco57I	CTGAAG	3 cut(s)	1443, 2069, 3503
EcoICRI	GAGCTC	1 cut(s)	1307
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	1129
EcoRII	CCWGG	4 cut(s)	2325, 2894, 2977, 3142
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	3 cut(s)	502, 1566, 3372
EcoT38I	GRGCYC	2 cut(s)	1057, 1309
ErhI	CCWWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	97
FalI	AAGNNNNNCTT	2 cut(s)	947, 979
FaqI	GGGAC	3 cut(s)	110, 292, 1748
FauI	CCCGC	2 cut(s)	136, 290
FauNDI	CATATG	1 cut(s)	2392
FblI	GTMKAC	1 cut(s)	3588
FokI	GGATG	7 cut(s)	482, 1738, 1916, 2381, 2810, 3180, 3403
FriOI	GRGCYC	2 cut(s)	1057, 1309
FspBI	CTAG	6 cut(s)	969, 1469, 1581, 1917, 1994, 3327
GlaI	GCGC	3 cut(s)	69, 881, 2582
GsuI	CTGGAG	1 cut(s)	1344
HaeII	RGCGCY	1 cut(s)	883
HaeIII	GGCC	3 cut(s)	153, 865, 3077
HapII	CCGG	3 cut(s)	35, 46, 637
HgaI	GACGC	1 cut(s)	3516
HhaI	GCGC	3 cut(s)	70, 882, 2583
Hin1I	GRCGYC	1 cut(s)	3527
Hin6I	GCGC	3 cut(s)	68, 880, 2581
HinP1I	GCGC	3 cut(s)	68, 880, 2581
HincII	GTYRAC	3 cut(s)	1780, 2323, 3589
HindII	GTYRAC	3 cut(s)	1780, 2323, 3589
HindIII	AAGCTT	2 cut(s)	961, 1955
HpaII	CCGG	3 cut(s)	35, 46, 637
HphI	GGTGA	7 cut(s)	271, 821, 962, 1783, 1864, 2884, 3020
Hpy166II	GTNNAC	6 cut(s)	667, 792, 1780, 2323, 2472, 3589
Hpy8I	GTNNAC	6 cut(s)	667, 792, 1780, 2323, 2472, 3589
Hpy99I	CGWCG	4 cut(s)	118, 121, 254, 439
HpyCH4III	ACNGT	9 cut(s)	137, 603, 612, 800, 1095, 1608, 2166, 2320, 3124
HpyCH4IV	ACGT	4 cut(s)	249, 788, 1644, 3109
HpySE526I	ACGT	4 cut(s)	249, 788, 1644, 3109
Hsp92I	GRCGYC	1 cut(s)	3527
HspAI	GCGC	3 cut(s)	68, 880, 2581
Kpn2I	TCCGGA	2 cut(s)	34, 45
LmnI	GCTCC	3 cut(s)	105, 421, 2173
MabI	ACCWGGT	2 cut(s)	2894, 3142
MaeI	CTAG	6 cut(s)	969, 1469, 1581, 1917, 1994, 3327
MaeII	ACGT	4 cut(s)	249, 788, 1644, 3109
MaeIII	GTNAC	7 cut(s)	541, 1023, 1789, 2731, 2927, 3170, 3296
MflI	RGATCY	3 cut(s)	632, 928, 3353
MhlI	GDGCHC	5 cut(s)	1013, 1057, 1309, 1806, 3378
MlyI	GAGTC	3 cut(s)	290, 632, 1285
MmeI	TCCRAC	4 cut(s)	105, 226, 1215, 3237
Mph1103I	ATGCAT	3 cut(s)	502, 1566, 3372
MroI	TCCGGA	2 cut(s)	34, 45
MroXI	GAANNNNTTC	3 cut(s)	1477, 1507, 2376
MslI	CAYNNNNRTG	4 cut(s)	1347, 2363, 2391, 3288
MspA1I	CMGCKG	2 cut(s)	168, 3129
MspCI	CTTAAG	1 cut(s)	1286
MspI	CCGG	3 cut(s)	35, 46, 637
MspR9I	CCNGG	5 cut(s)	637, 2327, 2896, 2979, 3144
Mva1269I	GAATGC	3 cut(s)	502, 1029, 3257
MvaI	CCWGG	4 cut(s)	2327, 2896, 2979, 3144
MvnI	CGCG	3 cut(s)	30, 70, 3499
NciI	CCSGG	1 cut(s)	637
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	2392
NheI	GCTAGC	1 cut(s)	1993
NlaIV	GGNNCC	8 cut(s)	308, 634, 781, 838, 930, 1586, 2175, 2727
NmuCI	GTSAC	5 cut(s)	541, 1789, 2731, 3170, 3296
NruI	TCGCGA	1 cut(s)	3499
NsiI	ATGCAT	3 cut(s)	502, 1566, 3372
NspI	RCATGY	6 cut(s)	1124, 1260, 2147, 2576, 2977, 3374
NspV	TTCGAA	1 cut(s)	1511
PaeI	GCATGC	2 cut(s)	1260, 2147
PagI	TCATGA	1 cut(s)	2428
PaqCI	CACCTGC	1 cut(s)	280
PciI	ACATGT	2 cut(s)	1120, 2572
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 3524
PctI	GAATGC	3 cut(s)	502, 1029, 3257
PdmI	GAANNNNTTC	3 cut(s)	1477, 1507, 2376
PfeI	GAWTC	7 cut(s)	1373, 1449, 1677, 2434, 2741, 2872, 3209
Pfl23II	CGTACG	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	635
PleI	GAGTC	3 cut(s)	290, 631, 1285
PpsI	GAGTC	3 cut(s)	290, 631, 1285
PpuMI	RGGWCCY	1 cut(s)	40
PscI	ACATGT	2 cut(s)	1120, 2572
PsiI	TTATAA	2 cut(s)	1928, 2922
Psp124BI	GAGCTC	1 cut(s)	1309
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	4 cut(s)	2325, 2894, 2977, 3142
PspGI	CCWGG	4 cut(s)	2325, 2894, 2977, 3142
PspLI	CGTACG	1 cut(s)	524
PspN4I	GGNNCC	8 cut(s)	308, 634, 781, 838, 930, 1586, 2175, 2727
PspPI	GGNCC	5 cut(s)	40, 151, 306, 2258, 2532
PspPPI	RGGWCCY	1 cut(s)	40
PstI	CTGCAG	3 cut(s)	737, 749, 2595
PstNI	CAGNNNCTG	1 cut(s)	741
PsuI	RGATCY	3 cut(s)	632, 928, 3353
PvuII	CAGCTG	2 cut(s)	168, 3129
RruI	TCGCGA	1 cut(s)	3499
RsaI	GTAC	4 cut(s)	526, 666, 3092, 3480
RsaNI	GTAC	4 cut(s)	525, 665, 3091, 3479
RseI	CAYNNNNRTG	4 cut(s)	1347, 2363, 2391, 3288
SacI	GAGCTC	1 cut(s)	1309
SalI	GTCGAC	1 cut(s)	3587
Sau96I	GGNCC	5 cut(s)	40, 151, 306, 2258, 2532
ScaI	AGTACT	2 cut(s)	3092, 3480
SchI	GAGTC	3 cut(s)	290, 632, 1285
ScrFI	CCNGG	5 cut(s)	637, 2327, 2896, 2979, 3144
SduI	GDGCHC	5 cut(s)	1013, 1057, 1309, 1806, 3378
SexAI	ACCWGGT	2 cut(s)	2894, 3142
SfcI	CTRYAG	3 cut(s)	733, 745, 2591
SfuI	TTCGAA	1 cut(s)	1511
SinI	GGWCC	4 cut(s)	40, 306, 2258, 2532
SmiI	ATTTAAAT	1 cut(s)	816
SmiMI	CAYNNNNRTG	4 cut(s)	1347, 2363, 2391, 3288
SmlI	CTYRAG	5 cut(s)	909, 1286, 2464, 2634, 2866
SmoI	CTYRAG	5 cut(s)	909, 1286, 2464, 2634, 2866
SphI	GCATGC	2 cut(s)	1260, 2147
SspI	AATATT	5 cut(s)	1494, 1507, 2108, 2375, 3201
SspMI	CTAG	6 cut(s)	969, 1469, 1581, 1917, 1994, 3327
SstI	GAGCTC	1 cut(s)	1309
StyD4I	CCNGG	5 cut(s)	635, 2325, 2894, 2977, 3142
StyI	CCWWGG	1 cut(s)	241
SwaI	ATTTAAAT	1 cut(s)	816
TaaI	ACNGT	9 cut(s)	137, 603, 612, 800, 1095, 1608, 2166, 2320, 3124
TaiI	ACGT	4 cut(s)	252, 791, 1647, 3112
TaqI	TCGA	6 cut(s)	503, 1511, 2221, 2961, 3031, 3588
TaqII	GACCGA	1 cut(s)	2275
TatI	WGTACW	3 cut(s)	664, 3090, 3478
TauI	GCSGC	4 cut(s)	30, 156, 414, 1620
TfiI	GAWTC	7 cut(s)	1373, 1449, 1677, 2434, 2741, 2872, 3209
TscAI	CASTG	8 cut(s)	308, 336, 388, 608, 712, 742, 754, 2062
TseFI	GTSAC	5 cut(s)	541, 1789, 2731, 3170, 3296
Tsp45I	GTSAC	5 cut(s)	541, 1789, 2731, 3170, 3296
TspGWI	ACGGA	1 cut(s)	2694
TspRI	CASTG	8 cut(s)	308, 336, 388, 608, 712, 742, 754, 2062
Vha464I	CTTAAG	1 cut(s)	1286
VpaK11BI	GGWCC	4 cut(s)	40, 306, 2258, 2532
XapI	RAATTY	9 cut(s)	1070, 1129, 1144, 1160, 1540, 1999, 2099, 2414, 2956
XceI	RCATGY	6 cut(s)	1124, 1260, 2147, 2576, 2977, 3374
XmiI	GTMKAC	1 cut(s)	3588
XmnI	GAANNNNTTC	3 cut(s)	1477, 1507, 2376
XspI	CTAG	6 cut(s)	969, 1469, 1581, 1917, 1994, 3327
ZrmI	AGTACT	2 cut(s)	3092, 3480
Zsp2I	ATGCAT	3 cut(s)	502, 1566, 3372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.