Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011934

Physical Location & Seq

Genomic Coordinates Reverse (-)

1495576 .. 1497822

Gene Structure 2247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0006900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCGACAATCTCATCACTTTTCTCATCACCCAATCTCCTTCACCACCCCACAAAACCCATCAAAGCCTCACCGAAGCTGACCCTCCAAATCCTGAAAGCGACACCGTTTCAGGGCTCTTATCTGAAGCTGACCTCCAGAGACTCGCAGAGGCTGTATGCTGTTGCCGAAGAAGTCGCCGCCGACCCGTCTTCCAAGGCCGCCAGGAGAGTCTACATCGGCAACATTCCCAGGACTGTGGATAATGCCGAGCTTACCAAAATTGTTGAAGAACATGGTGCTGTTGAGAAGGCTGAGGTGATGTATGATAAGTACTCAGGAAGAAGTCGCCGGTTTGCATTTGTTACAGCAGAGACTGTTGAAGATGCAAATACCATAGTTGAGAAGCTGAATGGAACTGAGGTTGGAGGACGCGAGATCAAGGTAAACATAACCGAGAAACCCCTTCTACAACCAGATTTATCACTTGTCCAGGCAGAAGAGTCTCAATTTGTCGACAGCCCCCACAAAGTTTATGTTGGAAATCTTGGAAAGGGAGTAACTACAGATACACTCCAAAAGCTTTTCTCTGAAAAAGCAAAAGTTCTTAGTGCAAAGGTCTCCCGGGTTCCAGGAACCTCAAAATCTAGTGGATTTGGGTTTGTCTCTTTCTCATCAGAGGAGGATGTAGAAGCTGCCATCTCATCTTTCAACAATACTTTTTTTGAAGGCCAAAGAATTCGCGTCAACAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000333 GO:0000723 GO:0003674 GO:0003676 GO:0003677 GO:0003720 GO:0003721 GO:0003723 GO:0003824 GO:0003964 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007004 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009888 GO:0009987 GO:0010073 GO:0010449 GO:0010833 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019827 GO:0022622 GO:0032200 GO:0032501 GO:0032502 GO:0032991 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035266 GO:0040007 GO:0042162 GO:0042575 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050000 GO:0051179 GO:0051276 GO:0051640 GO:0051641 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070034 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05165 ko05166 ko05200 ko05225 ko05226 map05165 map05166 map05200 map05225 map05226

Pfam Domains

Protein Families

RVT_1 Telomerase_RBD

Protein Analysis

245

Amino Acids

26.81

Weight (kDa)

8.92

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	71 - 141	7.2e-17	RNA recognition motif
RRM_1	PF00076	171 - 241	2.3e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16850 AT5G16850
fragaria_vesca	FvH4_7g01000 FvH4_7g01000
malus_domestica	MD07G1010300.v1.1
prunus_persica	Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0315901
rosa_laevigata	RLG00000030725
rosa_roxburghii	Rroxscaffold_4G00331320
rosa_rugosa	Rorug01G0006900
rosa_samantha	Rh1AG017600 Rh1BG010500 Rh1CG015000 Rh1DG010600
rosa_wichuraiana	Rw1G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	213, 495
AccII	CGCG	2 cut(s)	414, 723
AciI	CCGC	2 cut(s)	180, 201
AcsI	RAATTY	1 cut(s)	717
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	269, 362, 691, 707
AjnI	CCWGG	4 cut(s)	203, 230, 471, 610
AluBI	AGCT	6 cut(s)	79, 130, 253, 388, 562, 674
AluI	AGCT	6 cut(s)	79, 130, 253, 388, 562, 674
Alw26I	GTCTC	5 cut(s)	135, 347, 489, 604, 649
AlwNI	CAGNNNCTG	2 cut(s)	154, 356
Ama87I	CYCGRG	1 cut(s)	603
AoxI	GGCC	2 cut(s)	198, 709
ApeKI	GCWGC	1 cut(s)	674
ApoI	RAATTY	1 cut(s)	717
AsuC2I	CCSGG	2 cut(s)	604, 605
AsuHPI	GGTGA	4 cut(s)	21, 35, 63, 310
AvaI	CYCGRG	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	2 cut(s)	68, 686
BciT130I	CCWGG	4 cut(s)	205, 232, 473, 612
BcnI	CCSGG	2 cut(s)	604, 605
BcoDI	GTCTC	5 cut(s)	135, 347, 489, 604, 649
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	3 cut(s)	180, 201, 675
BlsI	GCNGC	3 cut(s)	181, 202, 676
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	6 cut(s)	205, 232, 473, 604, 605, 612
BmeT110I	CYCGRG	1 cut(s)	603
BmiI	GGNNCC	2 cut(s)	609, 616
BmrFI	CCNGG	6 cut(s)	205, 232, 473, 604, 605, 612
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	604, 605
BsaI	GGTCTC	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	195, 230, 603
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	330
BseBI	CCWGG	4 cut(s)	205, 232, 473, 612
BseDI	CCNNGG	3 cut(s)	195, 230, 603
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	3 cut(s)	285, 330, 390
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	1 cut(s)	661
Bsh1236I	CGCG	2 cut(s)	414, 723
BshFI	GGCC	2 cut(s)	200, 711
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	2 cut(s)	331, 604
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	5 cut(s)	135, 347, 489, 604, 649
BsnI	GGCC	2 cut(s)	200, 711
Bso31I	GGTCTC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	603
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	2 cut(s)	180, 201
BspANI	GGCC	2 cut(s)	200, 711
BspCNI	CTCAG	3 cut(s)	286, 329, 391
BspFNI	CGCG	2 cut(s)	414, 723
BspLI	GGNNCC	2 cut(s)	609, 616
BspTNI	GGTCTC	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	330
BssECI	CCNNGG	3 cut(s)	195, 230, 603
BssMI	GATC	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	4 cut(s)	205, 232, 473, 612
Bst4CI	ACNGT	3 cut(s)	108, 238, 358
Bst6I	CTCTTC	1 cut(s)	474
BstDEI	CTNAG	4 cut(s)	294, 316, 399, 587
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	2 cut(s)	414, 723
BstKTI	GATC	1 cut(s)	420
BstMAI	GTCTC	5 cut(s)	135, 347, 489, 604, 649
BstMBI	GATC	1 cut(s)	417
BstNI	CCWGG	4 cut(s)	205, 232, 473, 612
BstSCI	CCNGG	6 cut(s)	203, 230, 471, 602, 603, 610
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	2 cut(s)	414, 723
BstV1I	GCAGC	1 cut(s)	661
BstV2I	GAAGAC	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	200, 711
BtsCI	GGATG	1 cut(s)	670
CaiI	CAGNNNCTG	2 cut(s)	154, 356
Cfr10I	RCCGGY	1 cut(s)	330
Cfr9I	CCCGGG	1 cut(s)	603
CseI	GACGC	2 cut(s)	420, 712
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	4 cut(s)	294, 316, 399, 587
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	717
EcoRII	CCWGG	4 cut(s)	203, 230, 471, 610
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	1 cut(s)	278
FaiI	YATR	7 cut(s)	159, 276, 306, 377, 431, 516, 736
FatI	CATG	1 cut(s)	274
FblI	GTMKAC	2 cut(s)	213, 495
Fnu4HI	GCNGC	3 cut(s)	180, 201, 675
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	180, 201, 675
FspBI	CTAG	1 cut(s)	627
GluI	GCNGC	3 cut(s)	180, 201, 675
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	200, 711
HapII	CCGG	2 cut(s)	331, 604
HgaI	GACGC	2 cut(s)	420, 712
Hin1II	CATG	1 cut(s)	278
HincII	GTYRAC	2 cut(s)	496, 727
HindII	GTYRAC	2 cut(s)	496, 727
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	3 cut(s)	143, 210, 482
HpaII	CCGG	2 cut(s)	331, 604
HphI	GGTGA	4 cut(s)	21, 35, 63, 310
Hpy166II	GTNNAC	4 cut(s)	214, 427, 496, 727
Hpy188I	TCNGA	3 cut(s)	126, 571, 658
Hpy188III	TCNNGA	3 cut(s)	94, 138, 318
Hpy8I	GTNNAC	4 cut(s)	214, 427, 496, 727
HpyAV	CCTTC	4 cut(s)	50, 283, 455, 701
HpyCH4III	ACNGT	3 cut(s)	108, 238, 358
HpyCH4V	TGCA	3 cut(s)	338, 368, 593
HpyF3I	CTNAG	4 cut(s)	294, 316, 399, 587
Hsp92II	CATG	1 cut(s)	278
Kzo9I	GATC	1 cut(s)	417
Lsp1109I	GCAGC	1 cut(s)	661
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	627
MaeIII	GTNAC	2 cut(s)	343, 538
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	6 cut(s)	182, 183, 281, 333, 374, 491
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	3 cut(s)	261, 488, 717
MlyI	GAGTC	3 cut(s)	137, 219, 491
MmeI	TCCRAC	2 cut(s)	385, 499
MspI	CCGG	2 cut(s)	331, 604
MspR9I	CCNGG	6 cut(s)	205, 232, 473, 604, 605, 612
MvaI	CCWGG	4 cut(s)	205, 232, 473, 612
MvnI	CGCG	2 cut(s)	414, 723
NciI	CCSGG	2 cut(s)	604, 605
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	609, 616
NmeAIII	GCCGAG	1 cut(s)	274
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	181, 202, 676
PleI	GAGTC	3 cut(s)	137, 218, 490
PpsI	GAGTC	3 cut(s)	137, 218, 490
Psp6I	CCWGG	4 cut(s)	203, 230, 471, 610
PspGI	CCWGG	4 cut(s)	203, 230, 471, 610
PspN4I	GGNNCC	2 cut(s)	609, 616
PstNI	CAGNNNCTG	2 cut(s)	154, 356
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	494
SatI	GCNGC	3 cut(s)	180, 201, 675
Sau3AI	GATC	1 cut(s)	417
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	3 cut(s)	137, 219, 491
ScrFI	CCNGG	6 cut(s)	205, 232, 473, 604, 605, 612
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	543
SmaI	CCCGGG	1 cut(s)	605
Sse9I	AATT	3 cut(s)	261, 488, 717
SsiI	CCGC	2 cut(s)	180, 201
SspMI	CTAG	1 cut(s)	627
StyD4I	CCNGG	6 cut(s)	203, 230, 471, 602, 603, 610
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	108, 238, 358
TaqI	TCGA	1 cut(s)	495
TasI	AATT	3 cut(s)	261, 488, 717
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	2 cut(s)	182, 203
TseI	GCWGC	1 cut(s)	674
TspMI	CCCGGG	1 cut(s)	603
XapI	RAATTY	1 cut(s)	717
XmaI	CCCGGG	1 cut(s)	603
XmiI	GTMKAC	2 cut(s)	213, 495
XspI	CTAG	1 cut(s)	627
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.