Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011934

Physical Location & Seq

Genomic Coordinates Reverse (-)

66501352 .. 66505250

Gene Structure 3899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGATAATAAATGTATTGTCCTTAATGATTTTAGATGTGCTGAATTCTGTAAAGCCTGATTCTGTTGGTTCAGAGTTTCTTGTTCAGAGTATTTTTGGCATATATGACATAGAAAGTGCACTGTCAAAGACATGTCCCAATGGCAGTGGTCTTTGTCTCATGGGATCTGCATGCCTATATCACTCGCTTGTTAAGTTGCTTAAAATTCTTATACGTAGAGCACAGTATGGCCATCATGTGAGATTACTTGAAAAGCATTGTGTTGTTAGAACTGTAAATCCTAATACAATCAAAAGCGGTGGTTGCTTCTCTGAGGGAGAAAAATGGGAGTACAATATACTCAAGAAATCTCAGTGTTGTACTGCAGACCATTGCAATAAATCTCCAGAAGTTAGTGAATCTTTCTCTGAGGAAATTAAGTCTTACTGCTTGAACAGTCAGGTGGAGTCATTTATATGGGCTGTTTGTAGGAGTATTGTTCCTCCTGAGTTGCTAGGAACTCATTCTAACTGGAGAATTTTGAGGAGAACTATTTCAAAGTTCATTCGACTTAGAAGATTTGAAAGGTTTTCCTTAAAACAATGTATGCATAAATTGAAAACGTCTAGGTTCCCGTTTCTATCAAATAAACATTATTTCTGCTGCATGAATAATGAGGCACCGAAACATGGGGATGGAAAAGGTGCAGACATTCAAAAGGGATTCAGTACGTTGAATGATGCTGTACATATTGTTAAAGTAAAACTCTTAGAAAGTTGGATTTATTGGTTCTTTTCATCTGTAGTTGTGCCATTGTTGCAAGCCAATTTCTATGTCACTGAAAGTGAGCATGGGAAGCAAGATGTATTTTACTACCGGAAGTCAGTTTGGGAGAAGGTGAAGAATAAGACCATAGTGACTTGCATGGATCAGAGCTATCAATATTTGGATGATGCGACAACTAGAAGAATTATAAGGAAACGATCATTTGGGTTTTCAAAGCTCCGGATTTGTCCAAAAGAGTATGGAGTGAGGTTGCTAGCAAATTTAAAAGCACCATCAAAATTGCCAGGGAAAGAGTCCTGTTTGGCAGATCAGTCTTGTGGAATTTTTAGAGGAAAGAAACTGCATAGGAGAAAGGTTAGATTTGAGCATTTCAAGTCCGTGAATCGTGTTCTTCGTGATACACATGTTGTTCTAAAAGCTATGCAGCTGAAAGAGACAGGGAAATTAGGATCATCGGTGTTTGATTACAATGATGTATACAGAAAGTTGTGCCCATTTCTAATTGGCATGAAGAGTGGATTCACTATGATACCTGATGTTTTTGTCATTGTCTCTGATGTATCAAAAGCCTTTGATTCTGTTGACCAGGATAAGCTGCTTGGTGTGCTGAAAGATGTTATAAGAGCAGATGAATATTTTCTCCAGCAGTCTCATCATGTCATCTTCAAGAAGGGTTCATTAAGGATTCATGAGCACCGTGCATTTCTAGATCAAAATACTGGCTCAAGATTTAAATCTAAATTACGTAGTGTCCTTGTTAATCAGGTTTGTTTGCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000333 GO:0000723 GO:0003674 GO:0003676 GO:0003677 GO:0003720 GO:0003721 GO:0003723 GO:0003824 GO:0003964 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007004 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009888 GO:0009987 GO:0010073 GO:0010449 GO:0010833 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019827 GO:0022622 GO:0032200 GO:0032501 GO:0032502 GO:0032991 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035266 GO:0040007 GO:0042162 GO:0042575 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050000 GO:0051179 GO:0051276 GO:0051640 GO:0051641 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070034 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05165 ko05166 ko05200 ko05225 ko05226 map05165 map05166 map05200 map05225 map05226

Pfam Domains

Protein Families

RVT_1 Telomerase_RBD

Protein Analysis

516

Amino Acids

59.17

Weight (kDa)

9.56

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Telomerase_RBD	PF12009	147 - 298	1.6e-36	Telomerase ribonucleoprotein complex - RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16850 AT5G16850
fragaria_vesca	FvH4_7g01000 FvH4_7g01000
malus_domestica	MD07G1010300.v1.1
prunus_persica	Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0315901
rosa_laevigata	RLG00000030725
rosa_roxburghii	Rroxscaffold_4G00331320
rosa_rugosa	Rorug01G0006900
rosa_samantha	Rh1AG017600 Rh1BG010500 Rh1CG015000 Rh1DG010600
rosa_wichuraiana	Rw1G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	953, 1385
AccB1I	GGYRCC	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	1242
AccIII	TCCGGA	1 cut(s)	984
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	3 cut(s)	172, 915, 1222
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	5 cut(s)	43, 204, 516, 1024, 1086
AfaI	GTAC	4 cut(s)	332, 361, 709, 726
AfiI	CCNNNNNNNGG	1 cut(s)	668
AflIII	ACRYGT	2 cut(s)	131, 1168
AjnI	CCWGG	2 cut(s)	1048, 1350
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	5 cut(s)	915, 982, 1184, 1192, 1360
AluI	AGCT	5 cut(s)	915, 982, 1184, 1192, 1360
Alw21I	GWGCWC	3 cut(s)	121, 223, 1461
Alw26I	GTCTC	4 cut(s)	161, 1193, 1321, 1419
Alw44I	GTGCAC	1 cut(s)	117
AlwI	GGATC	3 cut(s)	172, 915, 1222
Aor13HI	TCCGGA	1 cut(s)	984
AoxI	GGCC	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	642, 1189, 1360
ApoI	RAATTY	5 cut(s)	43, 204, 516, 1024, 1086
Asp700I	GAANNNNTTC	3 cut(s)	502, 532, 1401
AsuHPI	GGTGA	1 cut(s)	889
AsuNHI	GCTAGC	1 cut(s)	1018
BaeGI	GKGCMC	2 cut(s)	121, 1259
BaeI	ACNNNNGTAYC	2 cut(s)	1155, 1188
BalI	TGGCCA	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	658
Bbv12I	GWGCWC	3 cut(s)	121, 223, 1461
BbvI	GCAGC	3 cut(s)	629, 1201, 1347
BccI	CCATC	3 cut(s)	240, 668, 1045
BciT130I	CCWGG	2 cut(s)	1050, 1352
BcoDI	GTCTC	4 cut(s)	161, 1193, 1321, 1419
BfaI	CTAG	5 cut(s)	494, 606, 942, 1019, 1472
BfmI	CTRYAG	2 cut(s)	363, 780
BisI	GCNGC	3 cut(s)	643, 1190, 1361
BlsI	GCNGC	3 cut(s)	644, 1191, 1362
Bme1390I	CCNGG	2 cut(s)	1050, 1352
BmiI	GGNNCC	2 cut(s)	611, 660
BmrFI	CCNGG	2 cut(s)	1050, 1352
BmsI	GCATC	2 cut(s)	709, 922
BmtI	GCTAGC	1 cut(s)	1022
BpmI	CTGGAG	3 cut(s)	369, 532, 1391
BpuEI	CTTGAG	2 cut(s)	326, 1474
BsaAI	YACGTR	2 cut(s)	215, 1511
BsaBI	GATNNNNATC	1 cut(s)	1498
BsaJI	CCNNGG	1 cut(s)	1049
BsaWI	WCCGGW	2 cut(s)	855, 984
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse1I	ACTGG	2 cut(s)	515, 1489
Bse3DI	GCAATG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	1498
BseAI	TCCGGA	1 cut(s)	984
BseBI	CCWGG	2 cut(s)	1050, 1352
BseDI	CCNNGG	1 cut(s)	1049
BseGI	GGATG	2 cut(s)	679, 934
BseJI	GATNNNNATC	1 cut(s)	1498
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	4 cut(s)	303, 365, 399, 477
BseNI	ACTGG	2 cut(s)	515, 1489
BseRI	GAGGAG	1 cut(s)	538
BseSI	GKGCMC	2 cut(s)	121, 1259
BseXI	GCAGC	3 cut(s)	629, 1201, 1347
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	658
BsiHKAI	GWGCWC	3 cut(s)	121, 223, 1461
BsiSI	CCGG	2 cut(s)	856, 985
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	4 cut(s)	161, 1193, 1321, 1419
BsmFI	GGGAC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	4 cut(s)	121, 223, 1259, 1461
Bsp13I	TCCGGA	1 cut(s)	984
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	6 cut(s)	164, 907, 962, 1072, 1214, 1474
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	304, 364, 400, 478
BspEI	TCCGGA	1 cut(s)	984
BspHI	TCATGA	1 cut(s)	1453
BspLI	GGNNCC	2 cut(s)	611, 660
BspMAI	CTGCAG	1 cut(s)	367
BspOI	GCTAGC	1 cut(s)	1022
BspPI	GGATC	3 cut(s)	172, 915, 1222
BspT107I	GGYRCC	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	724
BsrI	ACTGG	2 cut(s)	515, 1489
BssECI	CCNNGG	1 cut(s)	1049
BssMI	GATC	6 cut(s)	164, 907, 962, 1072, 1214, 1474
BssNAI	GTATAC	1 cut(s)	1243
Bst1107I	GTATAC	1 cut(s)	1243
Bst2UI	CCWGG	2 cut(s)	1050, 1352
Bst4CI	ACNGT	5 cut(s)	123, 225, 274, 437, 1463
Bst6I	CTCTTC	1 cut(s)	1271
BstAUI	TGTACA	1 cut(s)	724
BstBAI	YACGTR	2 cut(s)	215, 1511
BstC8I	GCNNGC	3 cut(s)	172, 801, 1020
BstDEI	CTNAG	6 cut(s)	312, 351, 408, 486, 551, 748
BstF5I	GGATG	2 cut(s)	679, 934
BstKTI	GATC	6 cut(s)	167, 910, 965, 1075, 1217, 1477
BstMAI	GTCTC	4 cut(s)	161, 1193, 1321, 1419
BstMBI	GATC	6 cut(s)	164, 907, 962, 1072, 1214, 1474
BstMWI	GCNNNNNNNGC	4 cut(s)	303, 796, 835, 1369
BstNI	CCWGG	2 cut(s)	1050, 1352
BstNSI	RCATGY	3 cut(s)	135, 174, 1172
BstSCI	CCNGG	2 cut(s)	1048, 1350
BstSFI	CTRYAG	2 cut(s)	363, 780
BstSLI	GKGCMC	2 cut(s)	121, 1259
BstSNI	TACGTA	2 cut(s)	215, 1511
BstV1I	GCAGC	3 cut(s)	629, 1201, 1347
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BstZ17I	GTATAC	1 cut(s)	1243
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	679, 934
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	4 cut(s)	119, 151, 359, 816
Cac8I	GCNNGC	3 cut(s)	172, 801, 1020
CciI	TCATGA	1 cut(s)	1453
Csp6I	GTAC	4 cut(s)	331, 360, 708, 725
CspCI	CAANNNNNGTGG	4 cut(s)	127, 162, 280, 315
CviQI	GTAC	4 cut(s)	331, 360, 708, 725
DdeI	CTNAG	6 cut(s)	312, 351, 408, 486, 551, 748
DpnI	GATC	6 cut(s)	166, 909, 964, 1074, 1216, 1476
DpnII	GATC	6 cut(s)	164, 907, 962, 1072, 1214, 1474
DraI	TTTAAA	2 cut(s)	1029, 1498
EaeI	YGGCCR	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	1271
EarI	CTCTTC	1 cut(s)	1271
Eco105I	TACGTA	2 cut(s)	215, 1511
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	1048, 1350
EcoT22I	ATGCAT	1 cut(s)	591
FaqI	GGGAC	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	1242
Fnu4HI	GCNGC	3 cut(s)	643, 1190, 1361
FokI	GGATG	2 cut(s)	686, 941
Fsp4HI	GCNGC	3 cut(s)	643, 1190, 1361
FspBI	CTAG	5 cut(s)	494, 606, 942, 1019, 1472
GluI	GCNGC	3 cut(s)	643, 1190, 1361
GsuI	CTGGAG	3 cut(s)	369, 532, 1391
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	856, 985
HincII	GTYRAC	1 cut(s)	1348
HindII	GTYRAC	1 cut(s)	1348
HinfI	GANTC	9 cut(s)	59, 398, 446, 702, 1058, 1147, 1284, 1340, 1450
HpaII	CCGG	2 cut(s)	856, 985
HphI	GGTGA	1 cut(s)	889
Hpy166II	GTNNAC	3 cut(s)	119, 1243, 1348
Hpy188I	TCNGA	6 cut(s)	73, 87, 313, 409, 912, 1321
Hpy188III	TCNNGA	9 cut(s)	343, 386, 485, 985, 1160, 1432, 1454, 1472, 1491
Hpy8I	GTNNAC	3 cut(s)	119, 1243, 1348
HpyAV	CCTTC	2 cut(s)	868, 1429
HpyCH4III	ACNGT	5 cut(s)	123, 225, 274, 437, 1463
HpyCH4IV	ACGT	4 cut(s)	214, 602, 710, 1510
HpyF10VI	GCNNNNNNNGC	4 cut(s)	303, 796, 835, 1369
HpyF3I	CTNAG	6 cut(s)	312, 351, 408, 486, 551, 748
HpySE526I	ACGT	4 cut(s)	214, 602, 710, 1510
Kpn2I	TCCGGA	1 cut(s)	984
Kzo9I	GATC	6 cut(s)	164, 907, 962, 1072, 1214, 1474
LmnI	GCTCC	1 cut(s)	987
Lsp1109I	GCAGC	3 cut(s)	629, 1201, 1347
LweI	GCATC	2 cut(s)	709, 922
MaeI	CTAG	5 cut(s)	494, 606, 942, 1019, 1472
MaeII	ACGT	4 cut(s)	214, 602, 710, 1510
MaeIII	GTNAC	2 cut(s)	814, 895
MalI	GATC	6 cut(s)	166, 909, 964, 1074, 1216, 1476
MboI	GATC	6 cut(s)	164, 907, 962, 1072, 1214, 1474
MboII	GAAGA	6 cut(s)	567, 892, 957, 1148, 1288, 1420
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	4 cut(s)	121, 223, 1259, 1461
MlsI	TGGCCA	1 cut(s)	231
MluNI	TGGCCA	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	455, 1067
MmeI	TCCRAC	1 cut(s)	737
MnlI	CCTC	7 cut(s)	307, 403, 492, 516, 649, 1005, 1088
Mox20I	TGGCCA	1 cut(s)	231
Mph1103I	ATGCAT	1 cut(s)	591
MroI	TCCGGA	1 cut(s)	984
MroXI	GAANNNNTTC	3 cut(s)	502, 532, 1401
MscI	TGGCCA	1 cut(s)	231
MslI	CAYNNNNRTG	2 cut(s)	454, 672
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	1192
MspI	CCGG	2 cut(s)	856, 985
MspR9I	CCNGG	2 cut(s)	1050, 1352
MvaI	CCWGG	2 cut(s)	1050, 1352
MwoI	GCNNNNNNNGC	4 cut(s)	303, 796, 835, 1369
NdeII	GATC	6 cut(s)	164, 907, 962, 1072, 1214, 1474
NheI	GCTAGC	1 cut(s)	1018
NlaIV	GGNNCC	2 cut(s)	611, 660
NmuCI	GTSAC	2 cut(s)	814, 895
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	3 cut(s)	135, 174, 1172
PaeI	GCATGC	1 cut(s)	174
PagI	TCATGA	1 cut(s)	1453
PciI	ACATGT	2 cut(s)	131, 1168
PcsI	WCGNNNNNNNCGW	1 cut(s)	1156
PdmI	GAANNNNTTC	3 cut(s)	502, 532, 1401
PfeI	GAWTC	7 cut(s)	59, 398, 702, 1147, 1284, 1340, 1450
PkrI	GCNGC	3 cut(s)	644, 1191, 1362
PleI	GAGTC	2 cut(s)	454, 1066
PpsI	GAGTC	2 cut(s)	454, 1066
Ppu21I	YACGTR	2 cut(s)	215, 1511
PscI	ACATGT	2 cut(s)	131, 1168
PsiI	TTATAA	2 cut(s)	953, 1385
Psp6I	CCWGG	2 cut(s)	1048, 1350
PspGI	CCWGG	2 cut(s)	1048, 1350
PspN4I	GGNNCC	2 cut(s)	611, 660
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	1192
RsaI	GTAC	4 cut(s)	332, 361, 709, 726
RsaNI	GTAC	4 cut(s)	331, 360, 708, 725
RseI	CAYNNNNRTG	2 cut(s)	454, 672
SatI	GCNGC	3 cut(s)	643, 1190, 1361
Sau3AI	GATC	6 cut(s)	164, 907, 962, 1072, 1214, 1474
SchI	GAGTC	2 cut(s)	455, 1067
ScrFI	CCNGG	2 cut(s)	1050, 1352
SduI	GDGCHC	4 cut(s)	121, 223, 1259, 1461
SfaNI	GCATC	2 cut(s)	709, 922
SfcI	CTRYAG	2 cut(s)	363, 780
SmiI	ATTTAAAT	1 cut(s)	1498
SmiMI	CAYNNNNRTG	2 cut(s)	454, 672
SmlI	CTYRAG	2 cut(s)	341, 1489
SmoI	CTYRAG	2 cut(s)	341, 1489
SnaBI	TACGTA	2 cut(s)	215, 1511
SphI	GCATGC	1 cut(s)	174
SsiI	CCGC	1 cut(s)	297
SspI	AATATT	2 cut(s)	923, 1400
SspMI	CTAG	5 cut(s)	494, 606, 942, 1019, 1472
StyD4I	CCNGG	2 cut(s)	1048, 1350
SwaI	ATTTAAAT	1 cut(s)	1498
TaaI	ACNGT	5 cut(s)	123, 225, 274, 437, 1463
TaiI	ACGT	4 cut(s)	217, 605, 713, 1513
TaqI	TCGA	1 cut(s)	547
TatI	WGTACW	3 cut(s)	330, 359, 724
TfiI	GAWTC	7 cut(s)	59, 398, 702, 1147, 1284, 1340, 1450
TscAI	CASTG	4 cut(s)	126, 151, 359, 823
TseFI	GTSAC	2 cut(s)	814, 895
TseI	GCWGC	3 cut(s)	642, 1189, 1360
Tsp45I	GTSAC	2 cut(s)	814, 895
TspDTI	ATGAA	7 cut(s)	532, 662, 765, 1289, 1410, 1431, 1442
TspGWI	ACGGA	1 cut(s)	1132
TspRI	CASTG	4 cut(s)	126, 151, 359, 823
VneI	GTGCAC	1 cut(s)	117
XapI	RAATTY	5 cut(s)	43, 204, 516, 1024, 1086
XbaI	TCTAGA	1 cut(s)	1471
XceI	RCATGY	3 cut(s)	135, 174, 1172
XmiI	GTMKAC	1 cut(s)	1242
XmnI	GAANNNNTTC	3 cut(s)	502, 532, 1401
XspI	CTAG	5 cut(s)	494, 606, 942, 1019, 1472
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.