Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011934

Physical Location & Seq

Genomic Coordinates Forward (+)

2981231 .. 2988795

Gene Structure 7565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG017600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

ATGACACCCACCAAAAAAGAAGCGCACTTTTTTCCCTCTAAAAATTCGAAAAGCCACTCTCTCAAGTCCACCACAGTCCAAAAGAGTGGAAAAGACCCTCCGAGTTCGTCGCCGCTCTCCGAGAAAATGATGAAGAAACGCCGCGTTCCGCAGGTCCTTTGGCGCCTCTTCCACCACCGCGCCCGCACTCTGGCCCACACTCTCACCTCCTTACTCCCTCCTCATTCTTCCTCTCCAAACGCCCAATGTCGTTTCTGCAAGGGCCGCCGTTGCCTCAGCTGCTGCACCGGCCCCGACGCCGTGTCGTTTCTCCTCCGACCCGACGATCCCTCCGATTACCGCTCTCTCCTCGACAAGTGCTTCGTCGTCGTCTCCGAAAACGCGCCCGGCATCACTCGCTTCTCCCCTGAATCTCACTGGTCCCAAATTGAGATCGTTAGAGCAGTCATCGAAACGACGATGCTGGAGCAATCTATGTCTTCCAATGTGATATGCAATGGTTATGATAAGCGTGACAAGTCAAGCACCATTGTAGAACTTCTGACTTCTTCGGCTTGGTGTCTTCTCTTAGAAAGGGTTGGCGATGGCATTATGGTTTATTTACTAAAGAATGCGTCGGTATTTTTGCGAATTCCGGATAAGAAACACCAGCAGGTGACAGGTCCTCCCATTAGTGACTTATGTCGTAAGAGGTTCTATTGCACACCGAATTCACAACGGCAACCGTCATCCCTTGCTCCATGTGGACCGCGGAAAAAGAGGAAAAGAGATGATAATGTTCACCCAATGTTAAAGAAAAAGCAGTTCATGAGTTCAGTCAGCATTGGAGAAAGCTCGAGTTCTGGTACCTGCAATGGCTGCTGTAACCATAGTGAAAATTACAGGCTTACGCATAGTCATATAAGTTTCTCTGAAGCATCTTCACCAGCAAGCAGCACGCTTACCAATGATTATGAAGGGAGTTTAAATCAGGAACTTACAGAGAGTTTGGAAACTCTAAGAAAGCGTTCAAGACCATTTCGTTGGCAGCGCTGCAGGAAACGCAGACAGTTATCTTTGCAAGAAACTGGTGTTAAGGGTCTTTTCAGAACTACTGTCGGTGATAAACAATGGTTACCTGGCAGGCTTTCGTCTTCCTTGAAACCGAGCTTAGGTCGACATTATGAACAGTGCAATTGTTTGGGGTTCCAAGTTCCCCAAAAGGTTTCCAATGGTGCTCAAATAGACAGGAAATCCTTGTTCTTCAATTTGGAATCTTCTTCATCAGTCTTTCCTAAAAAGCATGTGCTGAATTCTGTAAAGCCTGATTCTGTTGGTTCAGAGTTTCTTGTTCAGAGTATTTTTGGCATATATGACATAGAAAGTGCACTGTCAAAGATATGTCCCAATGGCAGTGGTCTTTGTCTCATGGGATCTACATGCCTATATCACTCGCTTGTTAAGTTGCTTAAAATTCTTATACGTAGAGCACAGTATGGCCATCATGTGAGATTACTGGAAAAGCATTGTGTTGTTAGAACTGTAAATCCTAATACAATCAAAAGCGGTGGTTGCATCTCTGAGGGAGAAAAGTGGGAGTACAATGTACTCAAGAAATCTCAGTGTTGTACTGCGGACCATTGCAATAAATCTCCAGAAGTTAGTGAATCTTTCTCTGATGAAATTAAGTCTTACTGCTTGAACAGTCAGGTGGAGTCATTTATATGGGCTGTTTGTAGGAGTATTGTTCCTCCTGAGTTGCTAGGAACTCCTTCTAACTGGAGAATTTTGAGGAGAACTATTTCAAAGTTCATTCGACTTAGAAGATTTGAAAGGTTTTCCTTAAAACAATGTATGCATAAATTGAAAACGTCTAGGTTCCCGTTTCTATCAAATAAACATTATTTCTGTTGCATGAATAATGAGGCACCGAAACATGCGGATGGAAAAGGTGTAGACATTCAAAAGGGATCCAGTACATTGAATGATGCTGTACATATTGTTAAAGTAAAACTCTTAGAAAGTTGGATTTATTGGTTCTTTTCATCTGTAGTTGTGCCATTGTTGCAAGCCAATTTCTATGTCACTGAAAGTGAGCATGGGAAGCAAGATGTATATTACTACCGGAAGTCAGTTTGGGAGAAGGTGAAGAATAAGACCATTGTCACTTGCATGGATCAGAGCTATCAATATTTGGATGATGCGACAACTAGAAGAATTATAAGGAAACGATCATTTGGGTTTTCAAAGCTCCGGATTTGTCCAAAAGAGTATGGAGTGAGGTTGCTAGCAAATTTAAAAGCACCATCAAAATTGCCAGGGAAAGAGTCCTGTTTGGCAGATCACTCTAGTGGAATATTTAGAGGAAAGAAACTGCATAGGAGAAAGGTTAGATTTGAGCATTTCAAGTCCGTGAATCGTGTTCTTCGTGATACACATGTTGTTCTAAAAGCTATGCAGCTGAAAGAGACAGGGAAATTAGGATCATCGGTGTTTGATTACAATGATGTATACAGAAAGTTGTGCCCATTTCTAATTGGCATGAAGAGTGGATTCACTATGATACCTGATGTGTTTATCATTGTCTCTGATGTATCAAAAGCCTTTGATACTGTTGACCAGGATAAGCTGCTTGGTGTGCTGAAAGATGTTATAAGAGCAGATGAATATTTTCTCCAGCAGTCTCATCATGTCATTTTCAAGAAGGGTTCACTAAGGATTCATGATAACCGTGCATTTCTAGATCAAAATACTGGCTCAAGATTTAAGTCTAAATTACGTAGTGTCCTTGTTAATCAGGAGTGCAGCAGGTCTGTGAAGAAGAAGGAGCTATTTTTTAATCTAAATGAGCATGTGAAGCGCAATGTGCTGCAGTTGGATAAAAAGTTTTATCTGCAACGTATCGAACTTGGGAACCTTCTATTCCAGATTTATCAAGAGGACATGATTTTCAAGTTGCTTCTGCTGCAGAGAGTAGCAGCGAGGATAAAATATCATCATCTTCTAGATATACTCTACTTAGATTTATTGATGATTTTCTTTTCATTTCAACCTCAAAGGCGCAGGCTGCCAGCTTCTTCTCCAGGTTGCAAAGAGGATTTCGGGATTACAACTGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000333 GO:0000723 GO:0003674 GO:0003676 GO:0003677 GO:0003720 GO:0003721 GO:0003723 GO:0003824 GO:0003964 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007004 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009888 GO:0009987 GO:0010073 GO:0010449 GO:0010833 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019827 GO:0022622 GO:0032200 GO:0032501 GO:0032502 GO:0032991 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035266 GO:0040007 GO:0042162 GO:0042575 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050000 GO:0051179 GO:0051276 GO:0051640 GO:0051641 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070034 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05165 ko05166 ko05200 ko05225 ko05226 map05165 map05166 map05200 map05225 map05226

Pfam Domains

Protein Families

RVT_1 Telomerase_RBD

Protein Analysis

1033

Amino Acids

118.25

Weight (kDa)

9.72

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Telomerase_RBD	PF12009	563 - 714	4e-36	Telomerase ribonucleoprotein complex - RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16850 AT5G16850
fragaria_vesca	FvH4_7g01000 FvH4_7g01000
malus_domestica	MD07G1010300.v1.1
prunus_persica	Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0315901
rosa_laevigata	RLG00000030725
rosa_roxburghii	Rroxscaffold_4G00331320
rosa_rugosa	Rorug01G0006900
rosa_samantha	Rh1AG017600 Rh1BG010500 Rh1CG015000 Rh1DG010600
rosa_wichuraiana	Rw1G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2201, 2633
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	4 cut(s)	142, 643, 857, 2778
Acc65I	GGTACC	1 cut(s)	845
AccB1I	GGYRCC	3 cut(s)	162, 845, 1906
AccBSI	CCGCTC	2 cut(s)	115, 342
AccI	GTMKAC	3 cut(s)	1156, 1935, 2490
AccII	CGCG	4 cut(s)	144, 180, 383, 751
AccIII	TCCGGA	2 cut(s)	634, 2232
AclWI	GGATC	6 cut(s)	320, 1420, 1944, 1957, 2163, 2470
AcoI	YGGCCR	1 cut(s)	1477
AcsI	RAATTY	7 cut(s)	43, 630, 709, 1291, 1452, 1764, 2272
AcuI	CTGAAG	1 cut(s)	933
AcyI	GRCGYC	2 cut(s)	163, 297
AfaI	GTAC	6 cut(s)	847, 1580, 1587, 1609, 1957, 1974
AfeI	AGCGCT	1 cut(s)	1031
AfiI	CCNNNNNNNGG	2 cut(s)	190, 1151
AflIII	ACRYGT	1 cut(s)	2416
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	4 cut(s)	1117, 2296, 2598, 3061
AleI	CACNNNNGTG	1 cut(s)	2328
AloI	GAACNNNNNNTCC	2 cut(s)	1510, 1542
Alw21I	GWGCWC	3 cut(s)	1219, 1369, 1471
Alw26I	GTCTC	5 cut(s)	376, 1409, 2441, 2569, 2667
Alw44I	GTGCAC	1 cut(s)	1365
AlwI	GGATC	6 cut(s)	320, 1420, 1944, 1957, 2163, 2470
AlwNI	CAGNNNCTG	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	835
Aor13HI	TCCGGA	2 cut(s)	634, 2232
Aor51HI	AGCGCT	1 cut(s)	1031
AoxI	GGCC	4 cut(s)	192, 262, 289, 1477
ApaLI	GTGCAC	1 cut(s)	1365
ApoI	RAATTY	7 cut(s)	43, 630, 709, 1291, 1452, 1764, 2272
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
Asp700I	GAANNNNTTC	4 cut(s)	1006, 1750, 1780, 2649
Asp718I	GGTACC	1 cut(s)	845
AspLEI	GCGC	7 cut(s)	25, 165, 182, 385, 1032, 2841, 3042
AspS9I	GGNCC	8 cut(s)	154, 193, 262, 290, 420, 662, 746, 1615
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	6 cut(s)	196, 667, 773, 915, 1112, 2137
AsuII	TTCGAA	1 cut(s)	47
AsuNHI	GCTAGC	1 cut(s)	2266
AvaI	CYCGRG	1 cut(s)	835
AvaII	GGWCC	5 cut(s)	154, 420, 662, 746, 1615
BaeGI	GKGCMC	2 cut(s)	1369, 2507
BaeI	ACNNNNGTAYC	2 cut(s)	2403, 2436
BalI	TGGCCA	1 cut(s)	1479
BamHI	GGATCC	1 cut(s)	1949
BanI	GGYRCC	3 cut(s)	162, 845, 1906
BbsI	GAAGAC	3 cut(s)	471, 554, 1125
Bbv12I	GWGCWC	3 cut(s)	1219, 1369, 1471
BbvCI	CCTCAGC	1 cut(s)	275
BccI	CCATC	4 cut(s)	578, 1488, 1916, 2293
BceAI	ACGGC	3 cut(s)	252, 284, 734
BciT130I	CCWGG	4 cut(s)	1119, 2298, 2600, 3063
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	5 cut(s)	376, 1409, 2441, 2569, 2667
BfaI	CTAG	7 cut(s)	1742, 1854, 2190, 2267, 2328, 2720, 2984
BfmI	CTRYAG	4 cut(s)	1033, 2028, 2849, 2945
BfoI	RGCGCY	2 cut(s)	166, 1033
BfuAI	ACCTGC	4 cut(s)	142, 643, 857, 2778
Bme1390I	CCNGG	5 cut(s)	387, 1119, 2298, 2600, 3063
Bme18I	GGWCC	5 cut(s)	154, 420, 662, 746, 1615
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmeT110I	CYCGRG	1 cut(s)	835
BmgT120I	GGNCC	8 cut(s)	154, 193, 262, 290, 420, 662, 746, 1615
BmiI	GGNNCC	9 cut(s)	164, 292, 422, 847, 1187, 1859, 1908, 1951, 2894
BmrFI	CCNGG	5 cut(s)	387, 1119, 2298, 2600, 3063
BmsI	GCATC	6 cut(s)	399, 450, 926, 1563, 1957, 2170
BmtI	GCTAGC	1 cut(s)	2270
BoxI	GACNNNNGTC	2 cut(s)	681, 2141
BpiI	GAAGAC	3 cut(s)	471, 554, 1125
BpmI	CTGGAG	5 cut(s)	485, 1617, 1780, 2639, 3045
Bpu10I	CCTNAGC	2 cut(s)	275, 1150
Bpu14I	TTCGAA	1 cut(s)	47
BpuEI	CTTGAG	3 cut(s)	47, 1574, 2722
BpuMI	CCSGG	1 cut(s)	387
BsaAI	YACGTR	2 cut(s)	1463, 2759
BsaHI	GRCGYC	2 cut(s)	163, 297
BsaJI	CCNNGG	2 cut(s)	749, 2297
BsaWI	WCCGGW	3 cut(s)	634, 2103, 2232
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 649, 679
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 1151
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	6 cut(s)	422, 1072, 1500, 1763, 1953, 2737
Bse3DI	GCAATG	4 cut(s)	502, 859, 1618, 2848
BseAI	TCCGGA	2 cut(s)	634, 2232
BseBI	CCWGG	4 cut(s)	1119, 2298, 2600, 3063
BseDI	CCNNGG	2 cut(s)	749, 2297
BseGI	GGATG	3 cut(s)	728, 1927, 2182
BseLI	CCNNNNNNNGG	2 cut(s)	190, 1151
BseMI	GCAATG	4 cut(s)	502, 859, 1618, 2848
BseMII	CTCAG	4 cut(s)	289, 1551, 1613, 1725
BseNI	ACTGG	6 cut(s)	422, 1072, 1500, 1763, 1953, 2737
BseRI	GAGGAG	4 cut(s)	210, 302, 338, 1786
BseSI	GKGCMC	2 cut(s)	1369, 2507
BsgI	GTGCAG	2 cut(s)	268, 2803
Bsh1236I	CGCG	4 cut(s)	144, 180, 383, 751
BshFI	GGCC	4 cut(s)	194, 264, 291, 1479
BshNI	GGYRCC	3 cut(s)	162, 845, 1906
BsiHKAI	GWGCWC	3 cut(s)	1219, 1369, 1471
BsiHKCI	CYCGRG	1 cut(s)	835
BsiSI	CCGG	5 cut(s)	288, 387, 635, 2104, 2233
BslFI	GGGAC	2 cut(s)	406, 1368
BslI	CCNNNNNNNGG	2 cut(s)	190, 1151
BsmAI	GTCTC	5 cut(s)	376, 1409, 2441, 2569, 2667
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	406, 1368
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	4 cut(s)	194, 264, 291, 1479
BsoBI	CYCGRG	1 cut(s)	835
Bsp119I	TTCGAA	1 cut(s)	47
Bsp1286I	GDGCHC	4 cut(s)	1219, 1369, 1471, 2507
Bsp13I	TCCGGA	2 cut(s)	634, 2232
Bsp1407I	TGTACA	1 cut(s)	1972
Bsp143I	GATC	9 cut(s)	325, 432, 1412, 1949, 2155, 2210, 2320, 2462, 2722
BspANI	GGCC	4 cut(s)	194, 264, 291, 1479
BspCNI	CTCAG	4 cut(s)	288, 1552, 1612, 1726
BspEI	TCCGGA	2 cut(s)	634, 2232
BspFNI	CGCG	4 cut(s)	144, 180, 383, 751
BspHI	TCATGA	2 cut(s)	807, 2701
BspLI	GGNNCC	9 cut(s)	164, 292, 422, 847, 1187, 1859, 1908, 1951, 2894
BspMAI	CTGCAG	3 cut(s)	1037, 2853, 2949
BspMI	ACCTGC	4 cut(s)	142, 643, 857, 2778
BspOI	GCTAGC	1 cut(s)	2270
BspPI	GGATC	6 cut(s)	320, 1420, 1944, 1957, 2163, 2470
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	3 cut(s)	162, 845, 1906
BsrBI	CCGCTC	2 cut(s)	115, 342
BsrDI	GCAATG	4 cut(s)	502, 859, 1618, 2848
BsrFI	RCCGGY	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	1972
BsrI	ACTGG	6 cut(s)	422, 1072, 1500, 1763, 1953, 2737
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	2 cut(s)	749, 2297
BssMI	GATC	9 cut(s)	325, 432, 1412, 1949, 2155, 2210, 2320, 2462, 2722
BssNAI	GTATAC	1 cut(s)	2491
BssNI	GRCGYC	2 cut(s)	163, 297
Bst1107I	GTATAC	1 cut(s)	2491
Bst2UI	CCWGG	4 cut(s)	1119, 2298, 2600, 3063
Bst6I	CTCTTC	2 cut(s)	173, 2519
BstACI	GRCGYC	2 cut(s)	163, 297
BstAPI	GCANNNNNTGC	1 cut(s)	858
BstAUI	TGTACA	1 cut(s)	1972
BstBAI	YACGTR	2 cut(s)	1463, 2759
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	8 cut(s)	184, 931, 938, 1124, 2049, 2268, 3044, 3051
BstDSI	CCRYGG	1 cut(s)	749
BstEII	GGTNACC	1 cut(s)	1113
BstF5I	GGATG	3 cut(s)	728, 1927, 2182
BstFNI	CGCG	4 cut(s)	144, 180, 383, 751
BstH2I	RGCGCY	2 cut(s)	166, 1033
BstHHI	GCGC	7 cut(s)	25, 165, 182, 385, 1032, 2841, 3042
BstKTI	GATC	9 cut(s)	328, 435, 1415, 1952, 2158, 2213, 2323, 2465, 2725
BstMAI	GTCTC	5 cut(s)	376, 1409, 2441, 2569, 2667
BstMBI	GATC	9 cut(s)	325, 432, 1412, 1949, 2155, 2210, 2320, 2462, 2722
BstNI	CCWGG	4 cut(s)	1119, 2298, 2600, 3063
BstNSI	RCATGY	5 cut(s)	1286, 1422, 1919, 2420, 2834
BstPAI	GACNNNNGTC	2 cut(s)	681, 2141
BstPI	GGTNACC	1 cut(s)	1113
BstSCI	CCNGG	5 cut(s)	385, 1117, 2296, 2598, 3061
BstSFI	CTRYAG	4 cut(s)	1033, 2028, 2849, 2945
BstSLI	GKGCMC	2 cut(s)	1369, 2507
BstSNI	TACGTA	2 cut(s)	1463, 2759
BstUI	CGCG	4 cut(s)	144, 180, 383, 751
BstV2I	GAAGAC	3 cut(s)	471, 554, 1125
BstX2I	RGATCY	2 cut(s)	1412, 1949
BstXI	CCANNNNNNTGG	2 cut(s)	86, 1023
BstYI	RGATCY	2 cut(s)	1412, 1949
BstZ17I	GTATAC	1 cut(s)	2491
BsuRI	GGCC	4 cut(s)	194, 264, 291, 1479
BtgI	CCRYGG	1 cut(s)	749
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	728, 1927, 2182
BtsI	GCAGTG	1 cut(s)	1399
BtsIMutI	CAGTG	6 cut(s)	415, 1175, 1367, 1399, 1607, 2064
BveI	ACCTGC	4 cut(s)	142, 643, 857, 2778
Cac8I	GCNNGC	8 cut(s)	184, 931, 938, 1124, 2049, 2268, 3044, 3051
CaiI	CAGNNNCTG	1 cut(s)	282
CciI	TCATGA	2 cut(s)	807, 2701
CfoI	GCGC	7 cut(s)	25, 165, 182, 385, 1032, 2841, 3042
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	8 cut(s)	154, 193, 262, 290, 420, 662, 746, 1615
Cfr42I	CCGCGG	1 cut(s)	752
CseI	GACGC	2 cut(s)	305, 603
Csp6I	GTAC	6 cut(s)	846, 1579, 1586, 1608, 1956, 1973
CspCI	CAANNNNNGTGG	4 cut(s)	1375, 1410, 1528, 1563
CviQI	GTAC	6 cut(s)	846, 1579, 1586, 1608, 1956, 1973
DinI	GGCGCC	1 cut(s)	164
DpnI	GATC	9 cut(s)	327, 434, 1414, 1951, 2157, 2212, 2322, 2464, 2724
DpnII	GATC	9 cut(s)	325, 432, 1412, 1949, 2155, 2210, 2320, 2462, 2722
DraI	TTTAAA	2 cut(s)	966, 2277
DriI	GACNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	1477
Eam1104I	CTCTTC	2 cut(s)	173, 2519
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	2 cut(s)	173, 2519
Eco105I	TACGTA	2 cut(s)	1463, 2759
Eco47I	GGWCC	5 cut(s)	154, 420, 662, 746, 1615
Eco47III	AGCGCT	1 cut(s)	1031
Eco57I	CTGAAG	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	835
Eco91I	GGTNACC	1 cut(s)	1113
EcoO109I	RGGNCCY	2 cut(s)	154, 662
EcoO65I	GGTNACC	1 cut(s)	1113
EcoRI	GAATTC	3 cut(s)	630, 709, 1291
EcoRII	CCWGG	4 cut(s)	1117, 2296, 2598, 3061
EcoT22I	ATGCAT	1 cut(s)	1839
EgeI	GGCGCC	1 cut(s)	164
EheI	GGCGCC	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	376
FaqI	GGGAC	2 cut(s)	406, 1368
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	3 cut(s)	1156, 1935, 2490
FokI	GGATG	3 cut(s)	715, 1934, 2189
FspBI	CTAG	7 cut(s)	1742, 1854, 2190, 2267, 2328, 2720, 2984
GlaI	GCGC	7 cut(s)	24, 164, 181, 384, 1031, 2840, 3041
GsuI	CTGGAG	5 cut(s)	485, 1617, 1780, 2639, 3045
HaeII	RGCGCY	2 cut(s)	166, 1033
HaeIII	GGCC	4 cut(s)	194, 264, 291, 1479
HapII	CCGG	5 cut(s)	288, 387, 635, 2104, 2233
HgaI	GACGC	2 cut(s)	305, 603
HhaI	GCGC	7 cut(s)	25, 165, 182, 385, 1032, 2841, 3042
Hin1I	GRCGYC	2 cut(s)	163, 297
Hin6I	GCGC	7 cut(s)	23, 163, 180, 383, 1030, 2839, 3040
HinP1I	GCGC	7 cut(s)	23, 163, 180, 383, 1030, 2839, 3040
HincII	GTYRAC	2 cut(s)	1157, 2596
HindII	GTYRAC	2 cut(s)	1157, 2596
HinfI	GANTC	9 cut(s)	410, 1253, 1307, 1646, 1694, 2306, 2395, 2532, 2698
HpaII	CCGG	5 cut(s)	288, 387, 635, 2104, 2233
HphI	GGTGA	6 cut(s)	196, 667, 773, 915, 1112, 2137
Hpy166II	GTNNAC	9 cut(s)	69, 746, 781, 1157, 1367, 1936, 2491, 2596, 2690
Hpy8I	GTNNAC	9 cut(s)	69, 746, 781, 1157, 1367, 1936, 2491, 2596, 2690
Hpy99I	CGWCG	7 cut(s)	112, 299, 326, 368, 371, 460, 619
HpyAV	CCTTC	6 cut(s)	950, 1761, 2116, 2677, 2797, 2906
HpyCH4IV	ACGT	4 cut(s)	1462, 1850, 2758, 2878
HpySE526I	ACGT	4 cut(s)	1462, 1850, 2758, 2878
Hsp92I	GRCGYC	2 cut(s)	163, 297
HspAI	GCGC	7 cut(s)	23, 163, 180, 383, 1030, 2839, 3040
KasI	GGCGCC	1 cut(s)	162
Kpn2I	TCCGGA	2 cut(s)	634, 2232
KpnI	GGTACC	1 cut(s)	849
KspI	CCGCGG	1 cut(s)	752
Kzo9I	GATC	9 cut(s)	325, 432, 1412, 1949, 2155, 2210, 2320, 2462, 2722
LmnI	GCTCC	4 cut(s)	466, 742, 2235, 2806
LweI	GCATC	6 cut(s)	399, 450, 926, 1563, 1957, 2170
MaeI	CTAG	7 cut(s)	1742, 1854, 2190, 2267, 2328, 2720, 2984
MaeII	ACGT	4 cut(s)	1462, 1850, 2758, 2878
MaeIII	GTNAC	7 cut(s)	512, 655, 674, 863, 1113, 2062, 2143
MalI	GATC	9 cut(s)	327, 434, 1414, 1951, 2157, 2212, 2322, 2464, 2724
MbiI	CCGCTC	2 cut(s)	115, 342
MboI	GATC	9 cut(s)	325, 432, 1412, 1949, 2155, 2210, 2320, 2462, 2722
MfeI	CAATTG	1 cut(s)	1174
MflI	RGATCY	2 cut(s)	1412, 1949
MhlI	GDGCHC	4 cut(s)	1219, 1369, 1471, 2507
MlsI	TGGCCA	1 cut(s)	1479
MluNI	TGGCCA	1 cut(s)	1479
Mly113I	GGCGCC	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	1703, 2315
MmeI	TCCRAC	3 cut(s)	340, 1985, 2835
Mox20I	TGGCCA	1 cut(s)	1479
Mph1103I	ATGCAT	1 cut(s)	1839
MroI	TCCGGA	2 cut(s)	634, 2232
MroXI	GAANNNNTTC	4 cut(s)	1006, 1750, 1780, 2649
MscI	TGGCCA	1 cut(s)	1479
MslI	CAYNNNNRTG	4 cut(s)	1702, 1920, 2150, 2328
Msp20I	TGGCCA	1 cut(s)	1479
MspA1I	CMGCKG	3 cut(s)	279, 751, 2440
MspI	CCGG	5 cut(s)	288, 387, 635, 2104, 2233
MspR9I	CCNGG	5 cut(s)	387, 1119, 2298, 2600, 3063
MunI	CAATTG	1 cut(s)	1174
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	4 cut(s)	1119, 2298, 2600, 3063
MvnI	CGCG	4 cut(s)	144, 180, 383, 751
NarI	GGCGCC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	387
NdeII	GATC	9 cut(s)	325, 432, 1412, 1949, 2155, 2210, 2320, 2462, 2722
NheI	GCTAGC	1 cut(s)	2266
NlaIV	GGNNCC	9 cut(s)	164, 292, 422, 847, 1187, 1859, 1908, 1951, 2894
NmuCI	GTSAC	5 cut(s)	512, 655, 674, 2062, 2143
NsiI	ATGCAT	1 cut(s)	1839
NspI	RCATGY	5 cut(s)	1286, 1422, 1919, 2420, 2834
NspV	TTCGAA	1 cut(s)	47
OliI	CACNNNNGTG	1 cut(s)	2328
PaeR7I	CTCGAG	1 cut(s)	835
PagI	TCATGA	2 cut(s)	807, 2701
PaqCI	CACCTGC	1 cut(s)	643
PciI	ACATGT	1 cut(s)	2416
PcsI	WCGNNNNNNNCGW	3 cut(s)	330, 372, 2404
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	4 cut(s)	1006, 1750, 1780, 2649
PfeI	GAWTC	7 cut(s)	410, 1253, 1307, 1646, 2395, 2532, 2698
PleI	GAGTC	2 cut(s)	1702, 2314
PluTI	GGCGCC	1 cut(s)	166
PpsI	GAGTC	2 cut(s)	1702, 2314
Ppu21I	YACGTR	2 cut(s)	1463, 2759
PpuMI	RGGWCCY	2 cut(s)	154, 662
PscI	ACATGT	1 cut(s)	2416
PshAI	GACNNNNGTC	2 cut(s)	681, 2141
PsiI	TTATAA	2 cut(s)	2201, 2633
Psp5II	RGGWCCY	2 cut(s)	154, 662
Psp6I	CCWGG	4 cut(s)	1117, 2296, 2598, 3061
PspEI	GGTNACC	1 cut(s)	1113
PspGI	CCWGG	4 cut(s)	1117, 2296, 2598, 3061
PspN4I	GGNNCC	9 cut(s)	164, 292, 422, 847, 1187, 1859, 1908, 1951, 2894
PspPI	GGNCC	8 cut(s)	154, 193, 262, 290, 420, 662, 746, 1615
PspPPI	RGGWCCY	2 cut(s)	154, 662
PspXI	VCTCGAGB	1 cut(s)	835
PstI	CTGCAG	3 cut(s)	1037, 2853, 2949
PstNI	CAGNNNCTG	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	1412, 1949
PvuII	CAGCTG	2 cut(s)	279, 2440
RsaI	GTAC	6 cut(s)	847, 1580, 1587, 1609, 1957, 1974
RsaNI	GTAC	6 cut(s)	846, 1579, 1586, 1608, 1956, 1973
RseI	CAYNNNNRTG	4 cut(s)	1702, 1920, 2150, 2328
SacII	CCGCGG	1 cut(s)	752
SalI	GTCGAC	1 cut(s)	1155
Sau3AI	GATC	9 cut(s)	325, 432, 1412, 1949, 2155, 2210, 2320, 2462, 2722
Sau96I	GGNCC	8 cut(s)	154, 193, 262, 290, 420, 662, 746, 1615
SchI	GAGTC	2 cut(s)	1703, 2315
ScrFI	CCNGG	5 cut(s)	387, 1119, 2298, 2600, 3063
SduI	GDGCHC	4 cut(s)	1219, 1369, 1471, 2507
SfaNI	GCATC	6 cut(s)	399, 450, 926, 1563, 1957, 2170
SfcI	CTRYAG	4 cut(s)	1033, 2028, 2849, 2945
SfoI	GGCGCC	1 cut(s)	164
Sfr274I	CTCGAG	1 cut(s)	835
Sfr303I	CCGCGG	1 cut(s)	752
SfuI	TTCGAA	1 cut(s)	47
SgrBI	CCGCGG	1 cut(s)	752
SinI	GGWCC	5 cut(s)	154, 420, 662, 746, 1615
SlaI	CTCGAG	1 cut(s)	835
SmiMI	CAYNNNNRTG	4 cut(s)	1702, 1920, 2150, 2328
SmlI	CTYRAG	4 cut(s)	62, 835, 1589, 2737
SmoI	CTYRAG	4 cut(s)	62, 835, 1589, 2737
SnaBI	TACGTA	2 cut(s)	1463, 2759
SspDI	GGCGCC	1 cut(s)	162
SspI	AATATT	3 cut(s)	2171, 2337, 2648
SspMI	CTAG	7 cut(s)	1742, 1854, 2190, 2267, 2328, 2720, 2984
StyD4I	CCNGG	5 cut(s)	385, 1117, 2296, 2598, 3061
TaiI	ACGT	4 cut(s)	1465, 1853, 2761, 2881
TaqI	TCGA	7 cut(s)	47, 351, 450, 836, 1156, 1795, 2883
TatI	WGTACW	5 cut(s)	1578, 1585, 1607, 1955, 1972
TauI	GCSGC	3 cut(s)	115, 144, 267
TfiI	GAWTC	7 cut(s)	410, 1253, 1307, 1646, 2395, 2532, 2698
TscAI	CASTG	6 cut(s)	422, 1175, 1374, 1399, 1607, 2071
TseFI	GTSAC	5 cut(s)	512, 655, 674, 2062, 2143
Tsp45I	GTSAC	5 cut(s)	512, 655, 674, 2062, 2143
TspGWI	ACGGA	1 cut(s)	2380
TspRI	CASTG	6 cut(s)	422, 1175, 1374, 1399, 1607, 2071
VneI	GTGCAC	1 cut(s)	1365
VpaK11BI	GGWCC	5 cut(s)	154, 420, 662, 746, 1615
XapI	RAATTY	7 cut(s)	43, 630, 709, 1291, 1452, 1764, 2272
XbaI	TCTAGA	2 cut(s)	2719, 2983
XceI	RCATGY	5 cut(s)	1286, 1422, 1919, 2420, 2834
XhoI	CTCGAG	1 cut(s)	835
XmiI	GTMKAC	3 cut(s)	1156, 1935, 2490
XmnI	GAANNNNTTC	4 cut(s)	1006, 1750, 1780, 2649
XspI	CTAG	7 cut(s)	1742, 1854, 2190, 2267, 2328, 2720, 2984
Zsp2I	ATGCAT	1 cut(s)	1839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.