Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011934

Physical Location & Seq

Genomic Coordinates Forward (+)

2983560 .. 2990988

Gene Structure 7429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3756 bp

ATGAAGAAACGCCGCGTTCCGCAGGTCCTTTGGCGCCTCTTCCACCACCGCGCCCGCACTCTGGCCCACACTCTCACCTCCTTACTCCCTCCTCATTCTTCCTCTCCAAACGCCCAATGTCGTTTCTGCAAGGGCCGCCGTTGCCTCAGCTGCTGCACCGGCCCCGACGCCGTGTCGTTTCTCCTCCGACCCGACGATCCCTCCGATTACCGCTCTCTCCTCGACAAGTGCTTCGTCGTCGTCTCCGAAAACGCGCCCGGCATCACTCGCTTCTCCCCTGAATCTCACTGGTCCCAAATTGAGATCGTTAGAGCAGTCATCGAAACGACGATGCTGGAGCAATCTATGTCTTCCAATGTGATATGCAATGGTTATGATAAGCGTGACAAGTCAAGCACCATTGTAGAACTTCTGACTTCTTCGGCTTGGTGTCTTCTCTTAGAAAGGGTTGGCGATGGCATTATGGTTTATTTACTAAAGAATGCGTCGGTATTTTTGCGAATTCCGGATAAGAAACACCAGCAGGTGACAGGTCCTCCCATTAGTGACTTATGTCGTAAGAGGTTCTATTGCACACCGAATTCACAACGGCAACCGTCATCCCTTGCTCCATGTGGACCGCGGAAAAAGAGGAAAAGAGATGATAATGTTCACCCAATGTTAAAGAAAAAGCAGTTCATGAGTTCAGTCAGCATTGGAGAAAGCTCGAGTTCTGGTACCTGCAATGGCTGCTGTAACCATAGTGAAAATTACAGGCTTACGCATAGTCATATAAGTTTCTCTGAAGCATCTTCACCAGCAAGCAGCACGCTTACCAATGATTATGAAGGGAGTTTAAATCAGGAACTTACAGAGAGTTTGGAAACTCTAAGAAAGCGTTCAAGACCATTTCGTTGGCAGCGCTGCAGGAAACGCAGACAGTTATCTTTGCAAGAAACTGGTGTTAAGGGTCTTTTCAGAACTACTGTCGGTGATAAACAATGGTTACCTGGCAGGCTTTCGTCTTCCTTGAAACCGAGCTTAGGTCGACATTATGAACAGTGCAATTGTTTGGGGTTCCAAGTTCCCCAAAAGGTTTCCAATGGTGCTCAAATAGACAGGAAATCCTTGTTCTTCAATTTGGAATCTTCTTCATCAGTCTTTCCTAAAAAGCATGTGCTGAATTCTGTAAAGCCTGATTCTGTTGGTTCAGAGTTTCTTGTTCAGAGTATTTTTGGCATATATGACATAGAAAGTGCACTGTCAAAGATATGTCCCAATGGCAGTGGTCTTTGTCTCATGGGATCTACATGCCTATATCACTCGCTTGTTAAGTTGCTTAAAATTCTTATACGTAGAGCACAGTATGGCCATCATGTGAGATTACTGGAAAAGCATTGTGTTGTTAGAACTGTAAATCCTAATACAATCAAAAGCGGTGGTTGCATCTCTGAGGGAGAAAAGTGGGAGTACAATGTACTCAAGAAATCTCAGTGTTGTACTGCGGACCATTGCAATAAATCTCCAGAAGTTAGTGAATCTTTCTCTGATGAAATTAAGTCTTACTGCTTGAACAGTCAGGTGGAGTCATTTATATGGGCTGTTTGTAGGAGTATTGTTCCTCCTGAGTTGCTAGGAACTCCTTCTAACTGGAGAATTTTGAGGAGAACTATTTCAAAGTTCATTCGACTTAGAAGATTTGAAAGGTTTTCCTTAAAACAATGTATGCATAAATTGAAAACGTCTAGGTTCCCGTTTCTATCAAATAAACATTATTTCTGTTGCATGAATAATGAGGCACCGAAACATGCGGATGGAAAAGGTGTAGACATTCAAAAGGGATCCAGTACATTGAATGATGCTGTACATATTGTTAAAGTAAAACTCTTAGAAAGTTGGATTTATTGGTTCTTTTCATCTGTAGTTGTGCCATTGTTGCAAGCCAATTTCTATGTCACTGAAAGTGAGCATGGGAAGCAAGATGTATATTACTACCGGAAGTCAGTTTGGGAGAAGGTGAAGAATAAGACCATTGTCACTTGCATGGATCAGAGCTATCAATATTTGGATGATGCGACAACTAGAAGAATTATAAGGAAACGATCATTTGGGTTTTCAAAGCTCCGGATTTGTCCAAAAGAGTATGGAGTGAGGTTGCTAGCAAATTTAAAAGCACCATCAAAATTGCCAGGGAAAGAGTCCTGTTTGGCAGATCACTCTAGTGGAATATTTAGAGGAAAGAAACTGCATAGGAGAAAGGTTAGATTTGAGCATTTCAAGTCCGTGAATCGTGTTCTTCGTGATACACATGTTGTTCTAAAAGCTATGCAGCTGAAAGAGACAGGGAAATTAGGATCATCGGTGTTTGATTACAATGATGTATACAGAAAGTTGTGCCCATTTCTAATTGGCATGAAGAGTGGATTCACTATGATACCTGATGTGTTTATCATTGTCTCTGATGTATCAAAAGCCTTTGATACTGTTGACCAGGATAAGCTGCTTGGTGTGCTGAAAGATGTTATAAGAGCAGATGAATATTTTCTCCAGCAGTCTCATCATGTCATTTTCAAGAAGGGTTCACTAAGGATTCATGATAACCGTGCATTTCTAGATCAAAATACTGGCTCAAGATTTAAGTCTAAATTACGTAGTGTCCTTGTTAATCAGGAGTGCAGCAGGTCTGTGAAGAAGAAGGAGCTATTTTTTAATCTAAATGAGCATGTGAAGCGCAATGTGCTGCAGTTGGATAAAAAGTTTTATCTGCAACGTATCGGTATTCCTCAAGGAAGCGTTTTGTCAACTTTGCTTTGCTCATTATACTATGGACATCTCGATCAGAATGTGATCTTTCCATTTCTTGACAGAACTTGGGAACCTTCTATTCCAGATTTATCAAGAGGACATGATTTTCAAGTTGCTTCTGCTGCAGAGAGTAGCAGCGAGGATAAAATATCATCATCTTCTAGATATACTCTACTTAGATTTATTGATGATTTTCTTTTCATTTCAACCTCAAAGGCGCAGGCTGCCAGCTTCTTCTCCAGGTTGCAAAGAGGATTTCGGGATTACAACTGCTACATGAACGAGAAAAAGTTCTGTGTAAATTTTGATATTGGAAACTTGCCATCAAACAGGGTCTACAGTGGTGATGATGGCATTTTATTTATTCGATGGAGTGGCTTGCTTATCAATTCTCGCACACTTGAAGTTCAGGCAGACTATACGAAGTACTTGAAAAACCATCTAAGTTCGACTGTTACTGTCCACTACCAAGGCAAACCTGGTCGCCATTTTAAAGGAAAGTTGCGTGACTACATGAGACCTAAGTGTCATCCCTTATTCTTTGATTCCCACATTAATTCAGCATCGGTTGTGAGATTAAATATCTACCAAGCATTCTTGCTATGTGCAATGAAGTTCCATTGTTATGTTCGTGACTTATCATGTATCTGCAAATTTCACTTTGGATTTTACGCTTACAGTATCCAAAAATCTTTGAGGTACATGCACAGGCTCATAAAGAAAAGGATGTGTTCATTGCATACTGGCTCTAACTTCAGCCCAATTCTTCAATTGGAAAAGGGAGAAGTTGAATGGCTTGGTTTATATGCTTATATCCAAGTATTGAAGAGAAAACAATCACGGTATAAGGAGTTGCTCTCCTTATTGAAGTCCAAGTTGTTAAATCATAAGATAACGGGCTGCGTTTCTTCTGAGCTAAGTTATGCAGTTGATAGATCACATTCTTCTGTAATTTGGAAGATCAAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000333 GO:0000723 GO:0003674 GO:0003676 GO:0003677 GO:0003720 GO:0003721 GO:0003723 GO:0003824 GO:0003964 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0006139 GO:0006259 GO:0006278 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007004 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009888 GO:0009987 GO:0010073 GO:0010449 GO:0010833 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019827 GO:0022622 GO:0032200 GO:0032501 GO:0032502 GO:0032991 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0035266 GO:0040007 GO:0042162 GO:0042575 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0050000 GO:0051179 GO:0051276 GO:0051640 GO:0051641 GO:0060249 GO:0061695 GO:0065007 GO:0065008 GO:0070034 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0097159 GO:0098727 GO:0099402 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05165 ko05166 ko05200 ko05225 ko05226 map05165 map05166 map05200 map05225 map05226

Pfam Domains

Protein Families

RVT_1 Telomerase_RBD

Protein Analysis

1251

Amino Acids

143.69

Weight (kDa)

9.66

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Telomerase_RBD	PF12009	520 - 671	5.2e-36	Telomerase ribonucleoprotein complex - RNA binding domain
RVT_1	PF00078	878 - 1027	7.3e-06	Reverse transcriptase (RNA-dependent DNA polymerase)
TERT_C	PF21399	1090 - 1217	1.2e-18	Telomerase reverse transcriptase, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16850 AT5G16850
fragaria_vesca	FvH4_7g01000 FvH4_7g01000
malus_domestica	MD07G1010300.v1.1
prunus_persica	Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1 Prupe.2G012600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0315901
rosa_laevigata	RLG00000030725
rosa_roxburghii	Rroxscaffold_4G00331320
rosa_rugosa	Rorug01G0006900
rosa_samantha	Rh1AG017600 Rh1BG010500 Rh1CG015000 Rh1DG010600
rosa_wichuraiana	Rw1G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2072, 2504
AarI	CACCTGC	1 cut(s)	514
AasI	GACNNNNNNGTC	1 cut(s)	3309
Acc36I	ACCTGC	4 cut(s)	13, 514, 728, 2649
Acc65I	GGTACC	1 cut(s)	716
AccB1I	GGYRCC	3 cut(s)	33, 716, 1777
AccBSI	CCGCTC	1 cut(s)	213
AccI	GTMKAC	4 cut(s)	1027, 1806, 2361, 3120
AccII	CGCG	4 cut(s)	15, 51, 254, 622
AccIII	TCCGGA	2 cut(s)	505, 2103
AclWI	GGATC	6 cut(s)	191, 1291, 1815, 1828, 2034, 2341
AcoI	YGGCCR	1 cut(s)	1348
AcsI	RAATTY	8 cut(s)	501, 580, 1162, 1323, 1635, 2143, 3085, 3437
AcuI	CTGAAG	2 cut(s)	804, 3523
AcyI	GRCGYC	2 cut(s)	34, 168
AfaI	GTAC	8 cut(s)	718, 1451, 1458, 1480, 1828, 1845, 3212, 3485
AfeI	AGCGCT	1 cut(s)	902
AfiI	CCNNNNNNNGG	2 cut(s)	61, 1022
AflIII	ACRYGT	1 cut(s)	2287
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	5 cut(s)	988, 2167, 2469, 3023, 3262
AleI	CACNNNNGTG	1 cut(s)	2199
AloI	GAACNNNNNNTCC	2 cut(s)	1381, 1413
Alw21I	GWGCWC	3 cut(s)	1090, 1240, 1342
Alw26I	GTCTC	6 cut(s)	247, 1280, 2312, 2440, 2538, 3295
Alw44I	GTGCAC	1 cut(s)	1236
AlwI	GGATC	6 cut(s)	191, 1291, 1815, 1828, 2034, 2341
AlwNI	CAGNNNCTG	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	706
Aor13HI	TCCGGA	2 cut(s)	505, 2103
Aor51HI	AGCGCT	1 cut(s)	902
AoxI	GGCC	4 cut(s)	63, 133, 160, 1348
ApaLI	GTGCAC	1 cut(s)	1236
ApoI	RAATTY	8 cut(s)	501, 580, 1162, 1323, 1635, 2143, 3085, 3437
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AseI	ATTAAT	1 cut(s)	3339
Asp700I	GAANNNNTTC	5 cut(s)	877, 1621, 1651, 2520, 3074
Asp718I	GGTACC	1 cut(s)	716
AspLEI	GCGC	6 cut(s)	36, 53, 256, 903, 2712, 3004
AspS9I	GGNCC	8 cut(s)	25, 64, 133, 161, 291, 533, 617, 1486
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	7 cut(s)	67, 538, 644, 786, 983, 2008, 3140
AsuNHI	GCTAGC	1 cut(s)	2137
AvaI	CYCGRG	1 cut(s)	706
AvaII	GGWCC	5 cut(s)	25, 291, 533, 617, 1486
BaeGI	GKGCMC	2 cut(s)	1240, 2378
BaeI	ACNNNNGTAYC	2 cut(s)	2274, 2307
BalI	TGGCCA	1 cut(s)	1350
BamHI	GGATCC	1 cut(s)	1820
BanI	GGYRCC	3 cut(s)	33, 716, 1777
BbsI	GAAGAC	3 cut(s)	342, 425, 996
Bbv12I	GWGCWC	3 cut(s)	1090, 1240, 1342
BbvCI	CCTCAGC	1 cut(s)	146
BccI	CCATC	8 cut(s)	449, 1359, 1787, 2164, 3115, 3128, 3147, 3231
BceAI	ACGGC	3 cut(s)	123, 155, 605
BciT130I	CCWGG	5 cut(s)	990, 2169, 2471, 3025, 3264
BciVI	GTATCC	1 cut(s)	3476
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	6 cut(s)	247, 1280, 2312, 2440, 2538, 3295
BfaI	CTAG	7 cut(s)	1613, 1725, 2061, 2138, 2199, 2591, 2946
BfmI	CTRYAG	5 cut(s)	904, 1899, 2720, 2907, 3121
BfoI	RGCGCY	2 cut(s)	37, 904
BfuAI	ACCTGC	4 cut(s)	13, 514, 728, 2649
BfuI	GTATCC	1 cut(s)	3476
BmcAI	AGTACT	1 cut(s)	3212
Bme1390I	CCNGG	6 cut(s)	258, 990, 2169, 2471, 3025, 3264
Bme18I	GGWCC	5 cut(s)	25, 291, 533, 617, 1486
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	8 cut(s)	25, 64, 133, 161, 291, 533, 617, 1486
BmiI	GGNNCC	9 cut(s)	35, 163, 293, 718, 1058, 1730, 1779, 1822, 2856
BmrFI	CCNGG	6 cut(s)	258, 990, 2169, 2471, 3025, 3264
BmsI	GCATC	7 cut(s)	270, 321, 797, 1434, 1828, 2041, 3356
BmtI	GCTAGC	1 cut(s)	2141
BoxI	GACNNNNGTC	2 cut(s)	552, 2012
BpiI	GAAGAC	3 cut(s)	342, 425, 996
BplI	GAGNNNNNCTC	2 cut(s)	3626, 3658
BpmI	CTGGAG	5 cut(s)	356, 1488, 1651, 2510, 3007
Bpu10I	CCTNAGC	2 cut(s)	146, 1021
BpuEI	CTTGAG	3 cut(s)	1445, 2593, 2748
BpuMI	CCSGG	1 cut(s)	258
BsaAI	YACGTR	2 cut(s)	1334, 2630
BsaHI	GRCGYC	2 cut(s)	34, 168
BsaI	GGTCTC	1 cut(s)	3295
BsaJI	CCNNGG	3 cut(s)	620, 2168, 3253
BsaWI	WCCGGW	3 cut(s)	505, 1974, 2103
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 520, 550
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 1022
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	7 cut(s)	293, 943, 1371, 1634, 1824, 2608, 3532
Bse3DI	GCAATG	6 cut(s)	373, 730, 1489, 2719, 3399, 3518
BseAI	TCCGGA	2 cut(s)	505, 2103
BseBI	CCWGG	5 cut(s)	990, 2169, 2471, 3025, 3264
BseDI	CCNNGG	3 cut(s)	620, 2168, 3253
BseGI	GGATG	5 cut(s)	599, 1798, 2053, 3313, 3516
BseLI	CCNNNNNNNGG	2 cut(s)	61, 1022
BseMI	GCAATG	6 cut(s)	373, 730, 1489, 2719, 3399, 3518
BseMII	CTCAG	5 cut(s)	160, 1422, 1484, 1596, 3687
BseNI	ACTGG	7 cut(s)	293, 943, 1371, 1634, 1824, 2608, 3532
BseRI	GAGGAG	4 cut(s)	81, 173, 209, 1657
BseSI	GKGCMC	2 cut(s)	1240, 2378
BsgI	GTGCAG	2 cut(s)	139, 2674
Bsh1236I	CGCG	4 cut(s)	15, 51, 254, 622
BshFI	GGCC	4 cut(s)	65, 135, 162, 1350
BshNI	GGYRCC	3 cut(s)	33, 716, 1777
BsiHKAI	GWGCWC	3 cut(s)	1090, 1240, 1342
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	5 cut(s)	159, 258, 506, 1975, 2104
BslFI	GGGAC	2 cut(s)	277, 1239
BslI	CCNNNNNNNGG	2 cut(s)	61, 1022
BsmAI	GTCTC	6 cut(s)	247, 1280, 2312, 2440, 2538, 3295
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	277, 1239
BsmI	GAATGC	2 cut(s)	487, 3377
BsnI	GGCC	4 cut(s)	65, 135, 162, 1350
Bso31I	GGTCTC	1 cut(s)	3295
BsoBI	CYCGRG	1 cut(s)	706
Bsp1286I	GDGCHC	4 cut(s)	1090, 1240, 1342, 2378
Bsp13I	TCCGGA	2 cut(s)	505, 2103
Bsp1407I	TGTACA	1 cut(s)	1843
BspANI	GGCC	4 cut(s)	65, 135, 162, 1350
BspCNI	CTCAG	5 cut(s)	159, 1423, 1483, 1597, 3688
BspEI	TCCGGA	2 cut(s)	505, 2103
BspFNI	CGCG	4 cut(s)	15, 51, 254, 622
BspHI	TCATGA	2 cut(s)	678, 2572
BspLI	GGNNCC	9 cut(s)	35, 163, 293, 718, 1058, 1730, 1779, 1822, 2856
BspMAI	CTGCAG	3 cut(s)	908, 2724, 2911
BspMI	ACCTGC	4 cut(s)	13, 514, 728, 2649
BspOI	GCTAGC	1 cut(s)	2141
BspPI	GGATC	6 cut(s)	191, 1291, 1815, 1828, 2034, 2341
BspT107I	GGYRCC	3 cut(s)	33, 716, 1777
BspTNI	GGTCTC	1 cut(s)	3295
BsrBI	CCGCTC	1 cut(s)	213
BsrDI	GCAATG	6 cut(s)	373, 730, 1489, 2719, 3399, 3518
BsrFI	RCCGGY	1 cut(s)	158
BsrGI	TGTACA	1 cut(s)	1843
BsrI	ACTGG	7 cut(s)	293, 943, 1371, 1634, 1824, 2608, 3532
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	620, 2168, 3253
BssNAI	GTATAC	1 cut(s)	2362
BssNI	GRCGYC	2 cut(s)	34, 168
BssT1I	CCWWGG	1 cut(s)	3253
Bst1107I	GTATAC	1 cut(s)	2362
Bst2UI	CCWGG	5 cut(s)	990, 2169, 2471, 3025, 3264
Bst6I	CTCTTC	3 cut(s)	44, 2390, 3605
BstACI	GRCGYC	2 cut(s)	34, 168
BstAPI	GCANNNNNTGC	1 cut(s)	729
BstAUI	TGTACA	1 cut(s)	1843
BstBAI	YACGTR	2 cut(s)	1334, 2630
BstC8I	GCNNGC	9 cut(s)	55, 802, 809, 995, 1920, 2139, 3006, 3013, 3164
BstDSI	CCRYGG	1 cut(s)	620
BstEII	GGTNACC	1 cut(s)	984
BstF5I	GGATG	5 cut(s)	599, 1798, 2053, 3313, 3516
BstFNI	CGCG	4 cut(s)	15, 51, 254, 622
BstH2I	RGCGCY	2 cut(s)	37, 904
BstHHI	GCGC	6 cut(s)	36, 53, 256, 903, 2712, 3004
BstMAI	GTCTC	6 cut(s)	247, 1280, 2312, 2440, 2538, 3295
BstNI	CCWGG	5 cut(s)	990, 2169, 2471, 3025, 3264
BstNSI	RCATGY	6 cut(s)	1157, 1293, 1790, 2291, 2705, 3490
BstPAI	GACNNNNGTC	2 cut(s)	552, 2012
BstPI	GGTNACC	1 cut(s)	984
BstSCI	CCNGG	6 cut(s)	256, 988, 2167, 2469, 3023, 3262
BstSFI	CTRYAG	5 cut(s)	904, 1899, 2720, 2907, 3121
BstSLI	GKGCMC	2 cut(s)	1240, 2378
BstSNI	TACGTA	2 cut(s)	1334, 2630
BstUI	CGCG	4 cut(s)	15, 51, 254, 622
BstV2I	GAAGAC	3 cut(s)	342, 425, 996
BstX2I	RGATCY	2 cut(s)	1283, 1820
BstXI	CCANNNNNNTGG	1 cut(s)	894
BstYI	RGATCY	2 cut(s)	1283, 1820
BstZ17I	GTATAC	1 cut(s)	2362
BsuI	GTATCC	1 cut(s)	3476
BsuRI	GGCC	4 cut(s)	65, 135, 162, 1350
BtgI	CCRYGG	1 cut(s)	620
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	5 cut(s)	599, 1798, 2053, 3313, 3516
BtsI	GCAGTG	1 cut(s)	1270
BtsIMutI	CAGTG	7 cut(s)	286, 1046, 1238, 1270, 1478, 1935, 3130
BveI	ACCTGC	4 cut(s)	13, 514, 728, 2649
Cac8I	GCNNGC	9 cut(s)	55, 802, 809, 995, 1920, 2139, 3006, 3013, 3164
CaiI	CAGNNNCTG	1 cut(s)	153
CciI	TCATGA	2 cut(s)	678, 2572
CfoI	GCGC	6 cut(s)	36, 53, 256, 903, 2712, 3004
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	8 cut(s)	25, 64, 133, 161, 291, 533, 617, 1486
Cfr42I	CCGCGG	1 cut(s)	623
CseI	GACGC	2 cut(s)	176, 474
CsiI	ACCWGGT	1 cut(s)	3262
Csp6I	GTAC	8 cut(s)	717, 1450, 1457, 1479, 1827, 1844, 3211, 3484
CspCI	CAANNNNNGTGG	4 cut(s)	1246, 1281, 1399, 1434
CviQI	GTAC	8 cut(s)	717, 1450, 1457, 1479, 1827, 1844, 3211, 3484
DinI	GGCGCC	1 cut(s)	35
DraI	TTTAAA	3 cut(s)	837, 2148, 3277
DrdI	GACNNNNNNGTC	1 cut(s)	3309
DriI	GACNNNNNGTC	1 cut(s)	172
DseDI	GACNNNNNNGTC	1 cut(s)	3309
EaeI	YGGCCR	1 cut(s)	1348
Eam1104I	CTCTTC	3 cut(s)	44, 2390, 3605
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	3 cut(s)	44, 2390, 3605
Eco105I	TACGTA	2 cut(s)	1334, 2630
Eco130I	CCWWGG	1 cut(s)	3253
Eco31I	GGTCTC	1 cut(s)	3295
Eco47I	GGWCC	5 cut(s)	25, 291, 533, 617, 1486
Eco47III	AGCGCT	1 cut(s)	902
Eco57I	CTGAAG	2 cut(s)	804, 3523
Eco88I	CYCGRG	1 cut(s)	706
Eco91I	GGTNACC	1 cut(s)	984
EcoO109I	RGGNCCY	2 cut(s)	25, 533
EcoO65I	GGTNACC	1 cut(s)	984
EcoRI	GAATTC	3 cut(s)	501, 580, 1162
EcoRII	CCWGG	5 cut(s)	988, 2167, 2469, 3023, 3262
EcoT14I	CCWWGG	1 cut(s)	3253
EcoT22I	ATGCAT	1 cut(s)	1710
EgeI	GGCGCC	1 cut(s)	35
EheI	GGCGCC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	3253
Esp3I	CGTCTC	1 cut(s)	247
FaqI	GGGAC	2 cut(s)	277, 1239
FauI	CCCGC	1 cut(s)	62
FblI	GTMKAC	4 cut(s)	1027, 1806, 2361, 3120
FokI	GGATG	5 cut(s)	586, 1805, 2060, 3300, 3523
FspBI	CTAG	7 cut(s)	1613, 1725, 2061, 2138, 2199, 2591, 2946
GlaI	GCGC	6 cut(s)	35, 52, 255, 902, 2711, 3003
GsuI	CTGGAG	5 cut(s)	356, 1488, 1651, 2510, 3007
HaeII	RGCGCY	2 cut(s)	37, 904
HaeIII	GGCC	4 cut(s)	65, 135, 162, 1350
HapII	CCGG	5 cut(s)	159, 258, 506, 1975, 2104
HgaI	GACGC	2 cut(s)	176, 474
HhaI	GCGC	6 cut(s)	36, 53, 256, 903, 2712, 3004
Hin1I	GRCGYC	2 cut(s)	34, 168
Hin6I	GCGC	6 cut(s)	34, 51, 254, 901, 2710, 3002
HinP1I	GCGC	6 cut(s)	34, 51, 254, 901, 2710, 3002
HincII	GTYRAC	3 cut(s)	1028, 2467, 2781
HindII	GTYRAC	3 cut(s)	1028, 2467, 2781
HpaII	CCGG	5 cut(s)	159, 258, 506, 1975, 2104
HphI	GGTGA	7 cut(s)	67, 538, 644, 786, 983, 2008, 3140
Hpy99I	CGWCG	6 cut(s)	170, 197, 239, 242, 331, 490
HpyAV	CCTTC	6 cut(s)	821, 1632, 1987, 2548, 2668, 2868
HpyCH4IV	ACGT	4 cut(s)	1333, 1721, 2629, 2749
HpySE526I	ACGT	4 cut(s)	1333, 1721, 2629, 2749
Hsp92I	GRCGYC	2 cut(s)	34, 168
HspAI	GCGC	6 cut(s)	34, 51, 254, 901, 2710, 3002
KasI	GGCGCC	1 cut(s)	33
Kpn2I	TCCGGA	2 cut(s)	505, 2103
KpnI	GGTACC	1 cut(s)	720
KspI	CCGCGG	1 cut(s)	623
LmnI	GCTCC	4 cut(s)	337, 613, 2106, 2677
LweI	GCATC	7 cut(s)	270, 321, 797, 1434, 1828, 2041, 3356
MabI	ACCWGGT	1 cut(s)	3262
MaeI	CTAG	7 cut(s)	1613, 1725, 2061, 2138, 2199, 2591, 2946
MaeII	ACGT	4 cut(s)	1333, 1721, 2629, 2749
MbiI	CCGCTC	1 cut(s)	213
MfeI	CAATTG	2 cut(s)	1045, 3554
MflI	RGATCY	2 cut(s)	1283, 1820
MhlI	GDGCHC	4 cut(s)	1090, 1240, 1342, 2378
MlsI	TGGCCA	1 cut(s)	1350
MluNI	TGGCCA	1 cut(s)	1350
Mly113I	GGCGCC	1 cut(s)	34
MlyI	GAGTC	2 cut(s)	1574, 2186
MmeI	TCCRAC	3 cut(s)	211, 1856, 2706
Mox20I	TGGCCA	1 cut(s)	1350
Mph1103I	ATGCAT	1 cut(s)	1710
MroI	TCCGGA	2 cut(s)	505, 2103
MroXI	GAANNNNTTC	5 cut(s)	877, 1621, 1651, 2520, 3074
MscI	TGGCCA	1 cut(s)	1350
MslI	CAYNNNNRTG	5 cut(s)	1573, 1791, 2021, 2199, 3408
Msp20I	TGGCCA	1 cut(s)	1350
MspA1I	CMGCKG	3 cut(s)	150, 622, 2311
MspI	CCGG	5 cut(s)	159, 258, 506, 1975, 2104
MspR9I	CCNGG	6 cut(s)	258, 990, 2169, 2471, 3025, 3264
MunI	CAATTG	2 cut(s)	1045, 3554
Mva1269I	GAATGC	2 cut(s)	487, 3377
MvaI	CCWGG	5 cut(s)	990, 2169, 2471, 3025, 3264
MvnI	CGCG	4 cut(s)	15, 51, 254, 622
NarI	GGCGCC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	258
NheI	GCTAGC	1 cut(s)	2137
NlaIV	GGNNCC	9 cut(s)	35, 163, 293, 718, 1058, 1730, 1779, 1822, 2856
NmuCI	GTSAC	7 cut(s)	383, 526, 545, 1933, 2014, 3290, 3416
NsiI	ATGCAT	1 cut(s)	1710
NspI	RCATGY	6 cut(s)	1157, 1293, 1790, 2291, 2705, 3490
OliI	CACNNNNGTG	1 cut(s)	2199
PaeR7I	CTCGAG	1 cut(s)	706
PagI	TCATGA	2 cut(s)	678, 2572
PaqCI	CACCTGC	1 cut(s)	514
PciI	ACATGT	1 cut(s)	2287
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 243, 2275
PctI	GAATGC	2 cut(s)	487, 3377
PdmI	GAANNNNTTC	5 cut(s)	877, 1621, 1651, 2520, 3074
PfeI	GAWTC	8 cut(s)	281, 1124, 1178, 1517, 2266, 2403, 2569, 3329
PleI	GAGTC	2 cut(s)	1573, 2185
PluTI	GGCGCC	1 cut(s)	37
PpsI	GAGTC	2 cut(s)	1573, 2185
Ppu21I	YACGTR	2 cut(s)	1334, 2630
PpuMI	RGGWCCY	2 cut(s)	25, 533
PscI	ACATGT	1 cut(s)	2287
PshAI	GACNNNNGTC	2 cut(s)	552, 2012
PshBI	ATTAAT	1 cut(s)	3339
PsiI	TTATAA	2 cut(s)	2072, 2504
Psp5II	RGGWCCY	2 cut(s)	25, 533
Psp6I	CCWGG	5 cut(s)	988, 2167, 2469, 3023, 3262
PspEI	GGTNACC	1 cut(s)	984
PspGI	CCWGG	5 cut(s)	988, 2167, 2469, 3023, 3262
PspN4I	GGNNCC	9 cut(s)	35, 163, 293, 718, 1058, 1730, 1779, 1822, 2856
PspPI	GGNCC	8 cut(s)	25, 64, 133, 161, 291, 533, 617, 1486
PspPPI	RGGWCCY	2 cut(s)	25, 533
PspXI	VCTCGAGB	1 cut(s)	706
PstI	CTGCAG	3 cut(s)	908, 2724, 2911
PstNI	CAGNNNCTG	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	1283, 1820
PvuII	CAGCTG	2 cut(s)	150, 2311
RsaI	GTAC	8 cut(s)	718, 1451, 1458, 1480, 1828, 1845, 3212, 3485
RsaNI	GTAC	8 cut(s)	717, 1450, 1457, 1479, 1827, 1844, 3211, 3484
RseI	CAYNNNNRTG	5 cut(s)	1573, 1791, 2021, 2199, 3408
SacII	CCGCGG	1 cut(s)	623
SalI	GTCGAC	1 cut(s)	1026
Sau96I	GGNCC	8 cut(s)	25, 64, 133, 161, 291, 533, 617, 1486
ScaI	AGTACT	1 cut(s)	3212
SchI	GAGTC	2 cut(s)	1574, 2186
ScrFI	CCNGG	6 cut(s)	258, 990, 2169, 2471, 3025, 3264
SduI	GDGCHC	4 cut(s)	1090, 1240, 1342, 2378
SexAI	ACCWGGT	1 cut(s)	3262
SfaNI	GCATC	7 cut(s)	270, 321, 797, 1434, 1828, 2041, 3356
SfcI	CTRYAG	5 cut(s)	904, 1899, 2720, 2907, 3121
SfoI	GGCGCC	1 cut(s)	35
Sfr274I	CTCGAG	1 cut(s)	706
Sfr303I	CCGCGG	1 cut(s)	623
SgrBI	CCGCGG	1 cut(s)	623
SinI	GGWCC	5 cut(s)	25, 291, 533, 617, 1486
SlaI	CTCGAG	1 cut(s)	706
SmiMI	CAYNNNNRTG	5 cut(s)	1573, 1791, 2021, 2199, 3408
SmlI	CTYRAG	4 cut(s)	706, 1460, 2608, 2763
SmoI	CTYRAG	4 cut(s)	706, 1460, 2608, 2763
SnaBI	TACGTA	2 cut(s)	1334, 2630
SspDI	GGCGCC	1 cut(s)	33
SspI	AATATT	3 cut(s)	2042, 2208, 2519
SspMI	CTAG	7 cut(s)	1613, 1725, 2061, 2138, 2199, 2591, 2946
StyD4I	CCNGG	6 cut(s)	256, 988, 2167, 2469, 3023, 3262
StyI	CCWWGG	1 cut(s)	3253
TaiI	ACGT	4 cut(s)	1336, 1724, 2632, 2752
TaqI	TCGA	8 cut(s)	222, 321, 707, 1027, 1666, 2814, 3151, 3233
TatI	WGTACW	6 cut(s)	1449, 1456, 1478, 1826, 1843, 3210
TauI	GCSGC	2 cut(s)	15, 138
TfiI	GAWTC	8 cut(s)	281, 1124, 1178, 1517, 2266, 2403, 2569, 3329
TscAI	CASTG	7 cut(s)	293, 1046, 1245, 1270, 1478, 1942, 3130
TseFI	GTSAC	7 cut(s)	383, 526, 545, 1933, 2014, 3290, 3416
Tsp45I	GTSAC	7 cut(s)	383, 526, 545, 1933, 2014, 3290, 3416
TspGWI	ACGGA	1 cut(s)	2251
TspRI	CASTG	7 cut(s)	293, 1046, 1245, 1270, 1478, 1942, 3130
VneI	GTGCAC	1 cut(s)	1236
VpaK11BI	GGWCC	5 cut(s)	25, 291, 533, 617, 1486
VspI	ATTAAT	1 cut(s)	3339
XapI	RAATTY	8 cut(s)	501, 580, 1162, 1323, 1635, 2143, 3085, 3437
XbaI	TCTAGA	2 cut(s)	2590, 2945
XceI	RCATGY	6 cut(s)	1157, 1293, 1790, 2291, 2705, 3490
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3260
XhoI	CTCGAG	1 cut(s)	706
XmiI	GTMKAC	4 cut(s)	1027, 1806, 2361, 3120
XmnI	GAANNNNTTC	5 cut(s)	877, 1621, 1651, 2520, 3074
XspI	CTAG	7 cut(s)	1613, 1725, 2061, 2138, 2199, 2591, 2946
ZrmI	AGTACT	1 cut(s)	3212
Zsp2I	ATGCAT	1 cut(s)	1710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.