U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g02490 FvH4_7g02490 FvH4_7g02490 |
| malus_domestica | MD02G1293000.v1.1 MD07G1034100.v1.1 |
| prunus_persica | Prupe.2G030600_v2.0.a1 Prupe.2G030600_v2.0.a1 |
| pyrus_communis | pycom02g24740 pycom07g02410 |
| rosa_chinensis | RchiOBHm_Chr1g0321131 |
| rosa_laevigata | RLG00000030449 |
| rosa_multiflora | Rmu_sc0004660.1_g000007 Rmu_sc0007977.1_g000007 |
| rosa_roxburghii | Rroxscaffold_160G00433740 Rroxscaffold_4G00328070 |
| rosa_rugosa | Rorug01G0031200 Rorug01G0031300 |
| rosa_samantha | Rh1AG043200 Rh1BG039900 Rh1CG045300 Rh1DG049900 |
| rosa_wichuraiana | Rw0G001070 Rw1G003790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1559 |
| AarI | CACCTGC | 1 cut(s) | 1397 |
| Acc36I | ACCTGC | 1 cut(s) | 1397 |
| AccB1I | GGYRCC | 1 cut(s) | 141 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1375, 1435 |
| AciI | CCGC | 2 cut(s) | 154, 1227 |
| AclWI | GGATC | 4 cut(s) | 123, 334, 1237, 1420 |
| AcoI | YGGCCR | 2 cut(s) | 151, 991 |
| AcsI | RAATTY | 3 cut(s) | 1042, 1282, 1503 |
| AcuI | CTGAAG | 2 cut(s) | 113, 1320 |
| AcyI | GRCGYC | 1 cut(s) | 142 |
| AfaI | GTAC | 2 cut(s) | 72, 311 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 428, 1248, 1375, 1435 |
| AgeI | ACCGGT | 1 cut(s) | 1234 |
| AgsI | TTSAA | 6 cut(s) | 161, 295, 419, 853, 1077, 1760 |
| AhlI | ACTAGT | 1 cut(s) | 301 |
| AjiI | CACGTC | 1 cut(s) | 218 |
| AjnI | CCWGG | 3 cut(s) | 498, 1247, 1566 |
| AleI | CACNNNNGTG | 1 cut(s) | 1130 |
| Alw21I | GWGCWC | 4 cut(s) | 375, 1473, 1480, 1677 |
| Alw26I | GTCTC | 1 cut(s) | 1638 |
| AlwI | GGATC | 4 cut(s) | 123, 334, 1237, 1420 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1721 |
| AoxI | GGCC | 3 cut(s) | 151, 991, 1366 |
| ApeKI | GCWGC | 5 cut(s) | 553, 556, 971, 974, 1253 |
| ApoI | RAATTY | 3 cut(s) | 1042, 1282, 1503 |
| AsiGI | ACCGGT | 1 cut(s) | 1234 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 639 |
| AspLEI | GCGC | 1 cut(s) | 144 |
| AsuHPI | GGTGA | 5 cut(s) | 704, 1207, 1224, 1390, 1709 |
| AsuII | TTCGAA | 1 cut(s) | 766 |
| BalI | TGGCCA | 1 cut(s) | 993 |
| BanI | GGYRCC | 1 cut(s) | 141 |
| BanII | GRGCYC | 2 cut(s) | 45, 375 |
| BbsI | GAAGAC | 2 cut(s) | 87, 119 |
| Bbv12I | GWGCWC | 4 cut(s) | 375, 1473, 1480, 1677 |
| BbvI | GCAGC | 5 cut(s) | 543, 565, 958, 961, 1240 |
| BccI | CCATC | 4 cut(s) | 22, 340, 361, 1002 |
| BceAI | ACGGC | 2 cut(s) | 129, 533 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1030, 1064 |
| BciT130I | CCWGG | 3 cut(s) | 500, 1249, 1568 |
| BciVI | GTATCC | 1 cut(s) | 1072 |
| BclI | TGATCA | 2 cut(s) | 379, 522 |
| BcoDI | GTCTC | 1 cut(s) | 1638 |
| BcuI | ACTAGT | 1 cut(s) | 301 |
| BfaI | CTAG | 7 cut(s) | 302, 750, 905, 1265, 1685, 1742, 1764 |
| BfmI | CTRYAG | 2 cut(s) | 551, 975 |
| BfoI | RGCGCY | 1 cut(s) | 145 |
| BfuAI | ACCTGC | 1 cut(s) | 1397 |
| BfuI | GTATCC | 1 cut(s) | 1072 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 150 |
| BglII | AGATCT | 1 cut(s) | 1079 |
| BisI | GCNGC | 6 cut(s) | 154, 554, 557, 972, 975, 1254 |
| BlpI | GCTNAGC | 1 cut(s) | 663 |
| BlsI | GCNGC | 6 cut(s) | 155, 555, 558, 973, 976, 1255 |
| Bme1390I | CCNGG | 3 cut(s) | 500, 1249, 1568 |
| BmgBI | CACGTC | 1 cut(s) | 218 |
| BmiI | GGNNCC | 2 cut(s) | 143, 597 |
| BmrFI | CCNGG | 3 cut(s) | 500, 1249, 1568 |
| BpiI | GAAGAC | 2 cut(s) | 87, 119 |
| BpmI | CTGGAG | 2 cut(s) | 1207, 1687 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1665 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 663 |
| Bpu14I | TTCGAA | 1 cut(s) | 766 |
| BpuEI | CTTGAG | 2 cut(s) | 346, 1575 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1711 |
| BsaHI | GRCGYC | 1 cut(s) | 142 |
| BsaJI | CCNNGG | 2 cut(s) | 397, 1248 |
| BsaWI | WCCGGW | 3 cut(s) | 697, 1140, 1234 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 428, 1248, 1375, 1435 |
| Bse118I | RCCGGY | 2 cut(s) | 284, 1234 |
| Bse1I | ACTGG | 2 cut(s) | 249, 693 |
| Bse3DI | GCAATG | 1 cut(s) | 735 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1711 |
| BseBI | CCWGG | 3 cut(s) | 500, 1249, 1568 |
| BseDI | CCNNGG | 2 cut(s) | 397, 1248 |
| BseGI | GGATG | 5 cut(s) | 205, 372, 392, 510, 755 |
| BseJI | GATNNNNATC | 1 cut(s) | 1711 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 428, 1248, 1375, 1435 |
| BseMI | GCAATG | 1 cut(s) | 735 |
| BseMII | CTCAG | 4 cut(s) | 641, 677, 1283, 1679 |
| BseNI | ACTGG | 2 cut(s) | 249, 693 |
| BseXI | GCAGC | 5 cut(s) | 543, 565, 958, 961, 1240 |
| BseYI | CCCAGC | 2 cut(s) | 224, 1689 |
| BsgI | GTGCAG | 2 cut(s) | 38, 326 |
| BshFI | GGCC | 3 cut(s) | 153, 993, 1368 |
| BshNI | GGYRCC | 1 cut(s) | 141 |
| BshTI | ACCGGT | 1 cut(s) | 1234 |
| BsiHKAI | GWGCWC | 4 cut(s) | 375, 1473, 1480, 1677 |
| BsiSI | CCGG | 5 cut(s) | 285, 698, 1141, 1235, 1550 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 428, 1248, 1375, 1435 |
| BsmAI | GTCTC | 1 cut(s) | 1638 |
| BsmI | GAATGC | 2 cut(s) | 156, 1545 |
| BsnI | GGCC | 3 cut(s) | 153, 993, 1368 |
| Bsp119I | TTCGAA | 1 cut(s) | 766 |
| Bsp1286I | GDGCHC | 5 cut(s) | 45, 375, 1473, 1480, 1677 |
| Bsp143I | GATC | 8 cut(s) | 115, 339, 379, 522, 1079, 1229, 1425, 1681 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 663 |
| BspACI | CCGC | 2 cut(s) | 154, 1227 |
| BspANI | GGCC | 3 cut(s) | 153, 993, 1368 |
| BspCNI | CTCAG | 4 cut(s) | 640, 676, 1282, 1678 |
| BspLI | GGNNCC | 2 cut(s) | 143, 597 |
| BspMAI | CTGCAG | 2 cut(s) | 555, 979 |
| BspMI | ACCTGC | 1 cut(s) | 1397 |
| BspPI | GGATC | 4 cut(s) | 123, 334, 1237, 1420 |
| BspQI | GCTCTTC | 2 cut(s) | 566, 882 |
| BspT104I | TTCGAA | 1 cut(s) | 766 |
| BspT107I | GGYRCC | 1 cut(s) | 141 |
| BsrDI | GCAATG | 1 cut(s) | 735 |
| BsrFI | RCCGGY | 2 cut(s) | 284, 1234 |
| BsrI | ACTGG | 2 cut(s) | 249, 693 |
| BssAI | RCCGGY | 2 cut(s) | 284, 1234 |
| BssECI | CCNNGG | 2 cut(s) | 397, 1248 |
| BssMI | GATC | 8 cut(s) | 115, 339, 379, 522, 1079, 1229, 1425, 1681 |
| BssNI | GRCGYC | 1 cut(s) | 142 |
| BssT1I | CCWWGG | 1 cut(s) | 397 |
| Bst2UI | CCWGG | 3 cut(s) | 500, 1249, 1568 |
| Bst4CI | ACNGT | 2 cut(s) | 962, 1605 |
| Bst6I | CTCTTC | 2 cut(s) | 566, 882 |
| BstACI | GRCGYC | 1 cut(s) | 142 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 623 |
| BstBI | TTCGAA | 1 cut(s) | 766 |
| BstC8I | GCNNGC | 3 cut(s) | 600, 723, 1734 |
| BstDEI | CTNAG | 4 cut(s) | 627, 663, 1269, 1665 |
| BstF5I | GGATG | 5 cut(s) | 205, 372, 392, 510, 755 |
| BstH2I | RGCGCY | 1 cut(s) | 145 |
| BstHHI | GCGC | 1 cut(s) | 144 |
| BstKTI | GATC | 8 cut(s) | 118, 342, 382, 525, 1082, 1232, 1428, 1684 |
| BstMAI | GTCTC | 1 cut(s) | 1638 |
| BstMBI | GATC | 8 cut(s) | 115, 339, 379, 522, 1079, 1229, 1425, 1681 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 150, 304, 476, 614, 623, 990, 1463 |
| BstNI | CCWGG | 3 cut(s) | 500, 1249, 1568 |
| BstSCI | CCNGG | 3 cut(s) | 498, 1247, 1566 |
| BstSFI | CTRYAG | 2 cut(s) | 551, 975 |
| BstV1I | GCAGC | 5 cut(s) | 543, 565, 958, 961, 1240 |
| BstV2I | GAAGAC | 2 cut(s) | 87, 119 |
| BstX2I | RGATCY | 3 cut(s) | 115, 339, 1079 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1107 |
| BstYI | RGATCY | 3 cut(s) | 115, 339, 1079 |
| BsuI | GTATCC | 1 cut(s) | 1072 |
| BsuRI | GGCC | 3 cut(s) | 153, 993, 1368 |
| BtrI | CACGTC | 1 cut(s) | 218 |
| BtsCI | GGATG | 5 cut(s) | 205, 372, 392, 510, 755 |
| BtsI | GCAGTG | 1 cut(s) | 850 |
| BtsIMutI | CAGTG | 5 cut(s) | 375, 725, 850, 967, 1601 |
| BveI | ACCTGC | 1 cut(s) | 1397 |
| Cac8I | GCNNGC | 3 cut(s) | 600, 723, 1734 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1721 |
| CfoI | GCGC | 1 cut(s) | 144 |
| Cfr10I | RCCGGY | 2 cut(s) | 284, 1234 |
| Csp6I | GTAC | 2 cut(s) | 71, 310 |
| CspAI | ACCGGT | 1 cut(s) | 1234 |
| CviAII | CATG | 4 cut(s) | 221, 331, 1361, 1496 |
| CviQI | GTAC | 2 cut(s) | 71, 310 |
| DdeI | CTNAG | 4 cut(s) | 627, 663, 1269, 1665 |
| DinI | GGCGCC | 1 cut(s) | 143 |
| DpnI | GATC | 8 cut(s) | 117, 341, 381, 524, 1081, 1231, 1427, 1683 |
| DpnII | GATC | 8 cut(s) | 115, 339, 379, 522, 1079, 1229, 1425, 1681 |
| EaeI | YGGCCR | 2 cut(s) | 151, 991 |
| Eam1104I | CTCTTC | 2 cut(s) | 566, 882 |
| EarI | CTCTTC | 2 cut(s) | 566, 882 |
| Ecl136II | GAGCTC | 1 cut(s) | 373 |
| Eco130I | CCWWGG | 1 cut(s) | 397 |
| Eco24I | GRGCYC | 2 cut(s) | 45, 375 |
| Eco53kI | GAGCTC | 1 cut(s) | 373 |
| Eco57I | CTGAAG | 2 cut(s) | 113, 1320 |
| EcoICRI | GAGCTC | 1 cut(s) | 373 |
| EcoRI | GAATTC | 1 cut(s) | 1282 |
| EcoRII | CCWGG | 3 cut(s) | 498, 1247, 1566 |
| EcoT14I | CCWWGG | 1 cut(s) | 397 |
| EcoT22I | ATGCAT | 1 cut(s) | 1348 |
| EcoT38I | GRGCYC | 2 cut(s) | 45, 375 |
| EgeI | GGCGCC | 1 cut(s) | 143 |
| EheI | GGCGCC | 1 cut(s) | 143 |
| ErhI | CCWWGG | 1 cut(s) | 397 |
| FaeI | CATG | 4 cut(s) | 224, 334, 1364, 1499 |
| FatI | CATG | 4 cut(s) | 220, 330, 1360, 1495 |
| FauNDI | CATATG | 1 cut(s) | 273 |
| FbaI | TGATCA | 2 cut(s) | 379, 522 |
| Fnu4HI | GCNGC | 6 cut(s) | 154, 554, 557, 972, 975, 1254 |
| FokI | GGATG | 5 cut(s) | 212, 379, 379, 497, 742 |
| FriOI | GRGCYC | 2 cut(s) | 45, 375 |
| Fsp4HI | GCNGC | 6 cut(s) | 154, 554, 557, 972, 975, 1254 |
| FspBI | CTAG | 7 cut(s) | 302, 750, 905, 1265, 1685, 1742, 1764 |
| GlaI | GCGC | 1 cut(s) | 143 |
| GluI | GCNGC | 6 cut(s) | 154, 554, 557, 972, 975, 1254 |
| GsaI | CCCAGC | 2 cut(s) | 228, 1693 |
| GsuI | CTGGAG | 2 cut(s) | 1207, 1687 |
| HaeII | RGCGCY | 1 cut(s) | 145 |
| HaeIII | GGCC | 3 cut(s) | 153, 993, 1368 |
| HapII | CCGG | 5 cut(s) | 285, 698, 1141, 1235, 1550 |
| HhaI | GCGC | 1 cut(s) | 144 |
| Hin1I | GRCGYC | 1 cut(s) | 142 |
| Hin1II | CATG | 4 cut(s) | 224, 334, 1364, 1499 |
| Hin6I | GCGC | 1 cut(s) | 142 |
| HinP1I | GCGC | 1 cut(s) | 142 |
| HincII | GTYRAC | 1 cut(s) | 649 |
| HindII | GTYRAC | 1 cut(s) | 649 |
| HinfI | GANTC | 6 cut(s) | 635, 853, 1198, 1571, 1658, 1700 |
| HpaI | GTTAAC | 1 cut(s) | 649 |
| HpaII | CCGG | 5 cut(s) | 285, 698, 1141, 1235, 1550 |
| HphI | GGTGA | 5 cut(s) | 704, 1207, 1224, 1390, 1709 |
| Hpy166II | GTNNAC | 2 cut(s) | 649, 1146 |
| Hpy188I | TCNGA | 5 cut(s) | 328, 431, 634, 1084, 1159 |
| Hpy188III | TCNNGA | 7 cut(s) | 343, 593, 750, 838, 1077, 1592, 1704 |
| Hpy8I | GTNNAC | 2 cut(s) | 649, 1146 |
| HpyAV | CCTTC | 5 cut(s) | 314, 772, 1009, 1344, 1433 |
| HpyCH4III | ACNGT | 2 cut(s) | 962, 1605 |
| HpyCH4IV | ACGT | 1 cut(s) | 217 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 150, 304, 476, 614, 623, 990, 1463 |
| HpyF3I | CTNAG | 4 cut(s) | 627, 663, 1269, 1665 |
| HpySE526I | ACGT | 1 cut(s) | 217 |
| Hsp92I | GRCGYC | 1 cut(s) | 142 |
| Hsp92II | CATG | 4 cut(s) | 224, 334, 1364, 1499 |
| HspAI | GCGC | 1 cut(s) | 142 |
| KasI | GGCGCC | 1 cut(s) | 141 |
| Ksp22I | TGATCA | 2 cut(s) | 379, 522 |
| KspAI | GTTAAC | 1 cut(s) | 649 |
| Kzo9I | GATC | 8 cut(s) | 115, 339, 379, 522, 1079, 1229, 1425, 1681 |
| LguI | GCTCTTC | 2 cut(s) | 566, 882 |
| LmnI | GCTCC | 4 cut(s) | 370, 595, 840, 1578 |
| Lsp1109I | GCAGC | 5 cut(s) | 543, 565, 958, 961, 1240 |
| MaeI | CTAG | 7 cut(s) | 302, 750, 905, 1265, 1685, 1742, 1764 |
| MaeII | ACGT | 1 cut(s) | 217 |
| MaeIII | GTNAC | 7 cut(s) | 251, 287, 568, 1018, 1215, 1697, 1766 |
| MalI | GATC | 8 cut(s) | 117, 341, 381, 524, 1081, 1231, 1427, 1683 |
| MboI | GATC | 8 cut(s) | 115, 339, 379, 522, 1079, 1229, 1425, 1681 |
| MboII | GAAGA | 9 cut(s) | 37, 92, 119, 553, 780, 783, 899, 989, 1630 |
| MfeI | CAATTG | 1 cut(s) | 414 |
| MflI | RGATCY | 3 cut(s) | 115, 339, 1079 |
| MhlI | GDGCHC | 5 cut(s) | 45, 375, 1473, 1480, 1677 |
| MlsI | TGGCCA | 1 cut(s) | 993 |
| MluCI | AATT | 7 cut(s) | 414, 1042, 1166, 1282, 1503, 1522, 1727 |
| MluNI | TGGCCA | 1 cut(s) | 993 |
| Mly113I | GGCGCC | 1 cut(s) | 142 |
| MlyI | GAGTC | 1 cut(s) | 1694 |
| MmeI | TCCRAC | 2 cut(s) | 409, 538 |
| Mox20I | TGGCCA | 1 cut(s) | 993 |
| Mph1103I | ATGCAT | 1 cut(s) | 1348 |
| MroXI | GAANNNNTTC | 1 cut(s) | 639 |
| MscI | TGGCCA | 1 cut(s) | 993 |
| MseI | TTAA | 9 cut(s) | 236, 473, 648, 683, 831, 1031, 1313, 1709, 1774 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1130, 1315 |
| Msp20I | TGGCCA | 1 cut(s) | 993 |
| MspA1I | CMGCKG | 3 cut(s) | 556, 1174, 1227 |
| MspI | CCGG | 5 cut(s) | 285, 698, 1141, 1235, 1550 |
| MspR9I | CCNGG | 3 cut(s) | 500, 1249, 1568 |
| MunI | CAATTG | 1 cut(s) | 414 |
| Mva1269I | GAATGC | 2 cut(s) | 156, 1545 |
| MvaI | CCWGG | 3 cut(s) | 500, 1249, 1568 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 150, 304, 476, 614, 623, 990, 1463 |
| NarI | GGCGCC | 1 cut(s) | 142 |
| NdeI | CATATG | 1 cut(s) | 273 |
| NdeII | GATC | 8 cut(s) | 115, 339, 379, 522, 1079, 1229, 1425, 1681 |
| NlaIII | CATG | 4 cut(s) | 224, 334, 1364, 1499 |
| NlaIV | GGNNCC | 2 cut(s) | 143, 597 |
| NmuCI | GTSAC | 2 cut(s) | 1215, 1697 |
| NsiI | ATGCAT | 1 cut(s) | 1348 |
| NspV | TTCGAA | 1 cut(s) | 766 |
| OliI | CACNNNNGTG | 1 cut(s) | 1130 |
| PaqCI | CACCTGC | 1 cut(s) | 1397 |
| PciSI | GCTCTTC | 2 cut(s) | 566, 882 |
| PctI | GAATGC | 2 cut(s) | 156, 1545 |
| PdmI | GAANNNNTTC | 1 cut(s) | 639 |
| PfeI | GAWTC | 5 cut(s) | 635, 853, 1198, 1571, 1658 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1375, 1435 |
| PfoI | TCCNGGA | 1 cut(s) | 1566 |
| PinAI | ACCGGT | 1 cut(s) | 1234 |
| PkrI | GCNGC | 6 cut(s) | 155, 555, 558, 973, 976, 1255 |
| PleI | GAGTC | 1 cut(s) | 1694 |
| PluTI | GGCGCC | 1 cut(s) | 145 |
| PpsI | GAGTC | 1 cut(s) | 1694 |
| PsiI | TTATAA | 1 cut(s) | 1559 |
| Psp124BI | GAGCTC | 1 cut(s) | 375 |
| Psp6I | CCWGG | 3 cut(s) | 498, 1247, 1566 |
| PspFI | CCCAGC | 2 cut(s) | 224, 1689 |
| PspGI | CCWGG | 3 cut(s) | 498, 1247, 1566 |
| PspN4I | GGNNCC | 2 cut(s) | 143, 597 |
| PstI | CTGCAG | 2 cut(s) | 555, 979 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1721 |
| PsuI | RGATCY | 3 cut(s) | 115, 339, 1079 |
| PvuII | CAGCTG | 2 cut(s) | 556, 1174 |
| RsaI | GTAC | 2 cut(s) | 72, 311 |
| RsaNI | GTAC | 2 cut(s) | 71, 310 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1130, 1315 |
| SacI | GAGCTC | 1 cut(s) | 375 |
| SapI | GCTCTTC | 2 cut(s) | 566, 882 |
| SaqAI | TTAA | 9 cut(s) | 236, 473, 648, 683, 831, 1031, 1313, 1709, 1774 |
| SatI | GCNGC | 6 cut(s) | 154, 554, 557, 972, 975, 1254 |
| Sau3AI | GATC | 8 cut(s) | 115, 339, 379, 522, 1079, 1229, 1425, 1681 |
| SchI | GAGTC | 1 cut(s) | 1694 |
| ScrFI | CCNGG | 3 cut(s) | 500, 1249, 1568 |
| SduI | GDGCHC | 5 cut(s) | 45, 375, 1473, 1480, 1677 |
| SfcI | CTRYAG | 2 cut(s) | 551, 975 |
| SfoI | GGCGCC | 1 cut(s) | 143 |
| SfuI | TTCGAA | 1 cut(s) | 766 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1130, 1315 |
| SmlI | CTYRAG | 2 cut(s) | 361, 1590 |
| SmoI | CTYRAG | 2 cut(s) | 361, 1590 |
| SpeI | ACTAGT | 1 cut(s) | 301 |
| Sse9I | AATT | 7 cut(s) | 414, 1042, 1166, 1282, 1503, 1522, 1727 |
| SsiI | CCGC | 2 cut(s) | 154, 1227 |
| SspDI | GGCGCC | 1 cut(s) | 141 |
| SspI | AATATT | 2 cut(s) | 937, 1434 |
| SspMI | CTAG | 7 cut(s) | 302, 750, 905, 1265, 1685, 1742, 1764 |
| SstI | GAGCTC | 1 cut(s) | 375 |
| StyD4I | CCNGG | 3 cut(s) | 498, 1247, 1566 |
| StyI | CCWWGG | 1 cut(s) | 397 |
| TaaI | ACNGT | 2 cut(s) | 962, 1605 |
| TaiI | ACGT | 1 cut(s) | 220 |
| TaqI | TCGA | 3 cut(s) | 453, 766, 1304 |
| TasI | AATT | 7 cut(s) | 414, 1042, 1166, 1282, 1503, 1522, 1727 |
| TauI | GCSGC | 1 cut(s) | 156 |
| TfiI | GAWTC | 5 cut(s) | 635, 853, 1198, 1571, 1658 |
| Tru1I | TTAA | 9 cut(s) | 236, 473, 648, 683, 831, 1031, 1313, 1709, 1774 |
| Tru9I | TTAA | 9 cut(s) | 236, 473, 648, 683, 831, 1031, 1313, 1709, 1774 |
| TscAI | CASTG | 5 cut(s) | 382, 732, 850, 967, 1608 |
| TseFI | GTSAC | 2 cut(s) | 1215, 1697 |
| TseI | GCWGC | 5 cut(s) | 553, 556, 971, 974, 1253 |
| Tsp45I | GTSAC | 2 cut(s) | 1215, 1697 |
| TspDTI | ATGAA | 7 cut(s) | 93, 260, 791, 1275, 1349, 1476, 1515 |
| TspGWI | ACGGA | 1 cut(s) | 1530 |
| TspRI | CASTG | 5 cut(s) | 382, 732, 850, 967, 1608 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1375, 1435 |
| XapI | RAATTY | 3 cut(s) | 1042, 1282, 1503 |
| XbaI | TCTAGA | 1 cut(s) | 749 |
| XmnI | GAANNNNTTC | 1 cut(s) | 639 |
| XspI | CTAG | 7 cut(s) | 302, 750, 905, 1265, 1685, 1742, 1764 |
| Zsp2I | ATGCAT | 1 cut(s) | 1348 |