pycom07g02410

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
1948089 .. 1950714
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02410.2

Sequence Viewer

Length: 1923 bp
ATGGAAGTGGAAGTGGAAGAGGAAATACAGGAGGAGAAAAGGGTTTCTTTTGGTATTGATGATGTTTCTTTGCAAATTAAGTATGGTGATGATGAACAGCTTAAATTTGCACTTTTGGAATTGAATGATTTGATTGGAGACAAAAGGGTTGGAGATGAATGGATTACTAATGAATGTGTTATTCCGATTCTGTTTAATCGGTTGAGTTCGAGTGATTCAGATAATCGGCTATGTATTATTCGATTGTTAAGCAGCCTTGCTTCAGATAATGCTGATAATAAGGAGAAAATGGCAGACGTTGGTTTTTTATCTGCGATCGTGAAATCATTGGTACGAGATGAAGAAGAAAGGAAAGAAGCTGTGGGGTTGTTGCTGTATCTCTCGGATCTTCAGTCAGTCAGGCGCCGGCTTGGGCGGATTCAAGGGTGTATAGTTATGTTGGTTGCCTTGTTAAATGGGGATCGATCGTGTTCGGACATGAGTAAGATCCTGATGGCAACAGCACTCTCAAGGATGGAGCTCACAGATCAAAGTAGAGCTTCCCTCGGGGAAAATGGTGCGATTGAACCCCTTGTCAGAATGTTTAGTGTAGGCAAGCTCGAAGCCAAATTATCTGCTTTAAGTGCCTTGAAAAATCTGTCAAACCTGACAGAAAATATCCAGCGGTTGATCAGTTCAGGCATCGTAGCATCCTTGCTTCAGCTCCTTTTTTCTGTGACATCAGTACTGATGACTCTTCGGGAGCCTGCATCAGCAATTCTTGCAAGGATTGCTCAATCAGAATCTATTCTTGTGAACTCAAATGTGGCTCAGCAGATGCTCTCACTTTTAAATCTCACCAGTCCGGTAATTCAAAATCACCTATTACAAGCACTTAATAGCATTGCCTCTCATTCCAGAGCAGGAAAAGTTAGAAGAAGGATGAAAGAAAATGGTGCCGTTCAGCTTCTCCTACCCTTCCTGATGGAAACTAACATTCAAATCAGAAGCAGTGCCTTGAATTTGTTTTACACTCTTTCAAAAGATTTAACAGAAGAGTTGACAGACCAACTAGGAGAAACCTATATCAGAAGAATCATCAATATCATCTCAACATCAACATCTGACAGTGAAAAAGCTGCTGCAGTTGGCATACTTAGCCATCTTCCCATTAGTGACAAGAAGGTGACGGAGTTATTAAAGAGAGAGAATTTGGTACCGATAATGGTATCCATAATGAATCCAAGATCCGAAATTGTAACACAGGAGACATGCTGGTTAGCAGAAAGCATTACAGGTCTGTTGATTCGGTTCACAAGTCCTTCTGATAAGAAATTACAACTGTATTCAGCAGAACAAGGTGTAATTCCTTTGCTTGTAAAGTTACTCTCGAGTGGATCGCCTGTTGCTAAATGCAGGGCTGCAACGTCACTAGCTCAATTTTCACAGAATTCATCATCTCTAAGGAAGTCGAGGAAATCAAGGTGGTTGTGCGTTCCTCCTTCTCAAGATGCTGTTTGTGAAGTTCATGATGGAAAATGCTTTGTGAAAAGCACATTTTGTTTGGTCAAGGCAGGTGCTATCCCTCCTATAATCCAAATATTGGAAGGTGATGAGAGGGAAGCGGATGAAGCCGCACTGAGTGTCCTTGCAACCCTCTTGCACGACGACATTTGGGAAAACGGAAGCAATTACATAGCCAAAAAGTCAGGAATTCAGCCCATCATAAAAGTCCTCGAATCCGGGAGCATCAAGGCTCAAGAGAAAGCACTGTGGATATTGGAGAAGATATTCGGAGTTGAGGAACACCGAGTGACATACGCGGAGTCTGCTCAGGTAGTGCTGATTGATCTAGCGCAGCATGGTGACTCCAGATTGAAATCAACCACTGCAAAATTACTGGCGCAACTAGAGTTATTGCAAGCTCAATCTAGTTACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

641

Amino Acids

70.57

Weight (kDa)

5.77

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1544
Acc36I ACCTGC 1 cut(s) 1544
Acc65I GGTACC 1 cut(s) 1195
AccB1I GGYRCC 3 cut(s) 402, 935, 1195
AccB7I CCANNNNNTGG 1 cut(s) 1582
AccII CGCG 1 cut(s) 1802
AciI CCGC 5 cut(s) 415, 664, 1604, 1614, 1802
AclWI GGATC 5 cut(s) 393, 468, 481, 1221, 1384
AcsI RAATTY 5 cut(s) 104, 1000, 1189, 1429, 1692
AcuI CTGAAG 3 cut(s) 246, 374, 683
AcyI GRCGYC 1 cut(s) 403
AdeI CACNNNGTG 2 cut(s) 1622, 1792
AfaI GTAC 3 cut(s) 333, 726, 1197
AfiI CCNNNNNNNGG 1 cut(s) 1582
AgsI TTSAA 9 cut(s) 124, 422, 566, 631, 854, 980, 1000, 1020, 1858
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 2 cut(s) 132, 1241
AlwI GGATC 5 cut(s) 393, 468, 481, 1221, 1384
Ama87I CYCGRG 2 cut(s) 545, 1369
ApeKI GCWGC 5 cut(s) 252, 1118, 1121, 1400, 1837
ApoI RAATTY 5 cut(s) 104, 1000, 1189, 1429, 1692
Asp700I GAANNNNTTC 2 cut(s) 786, 1769
Asp718I GGTACC 1 cut(s) 1195
AspLEI GCGC 3 cut(s) 405, 1837, 1885
AsuC2I CCSGG 1 cut(s) 1723
AsuHPI GGTGA 6 cut(s) 98, 829, 851, 1177, 1601, 1856
AvaI CYCGRG 2 cut(s) 545, 1369
BanI GGYRCC 3 cut(s) 402, 935, 1195
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 9, 41
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 5 cut(s) 264, 1105, 1108, 1387, 1849
BccI CCATC 6 cut(s) 487, 508, 958, 1149, 1505, 1709
BceAI ACGGC 1 cut(s) 923
BciVI GTATCC 1 cut(s) 1219
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 1 cut(s) 1723
BcoDI GTCTC 2 cut(s) 132, 1241
BfaI CTAG 5 cut(s) 1052, 1412, 1832, 1889, 1911
BfmI CTRYAG 1 cut(s) 1122
BfoI RGCGCY 1 cut(s) 406
BfuAI ACCTGC 1 cut(s) 1544
BfuI GTATCC 1 cut(s) 1219
BisI GCNGC 6 cut(s) 253, 1119, 1122, 1401, 1614, 1838
BlpI GCTNAGC 1 cut(s) 810
BlsI GCNGC 6 cut(s) 254, 1120, 1123, 1402, 1615, 1839
BmcAI AGTACT 1 cut(s) 726
Bme1390I CCNGG 1 cut(s) 1723
BmeT110I CYCGRG 2 cut(s) 545, 1369
BmiI GGNNCC 4 cut(s) 404, 744, 937, 1197
BmrFI CCNGG 1 cut(s) 1723
BmsI GCATC 6 cut(s) 690, 698, 758, 807, 1480, 1737
BplI GAGNNNNNCTC 2 cut(s) 528, 560
BpmI CTGGAG 1 cut(s) 1834
Bpu10I CCTNAGC 1 cut(s) 1812
Bpu1102I GCTNAGC 1 cut(s) 810
BpuEI CTTGAG 3 cut(s) 493, 1470, 1722
BpuMI CCSGG 1 cut(s) 1723
Bsa29I ATCGAT 1 cut(s) 463
BsaBI GATNNNNATC 1 cut(s) 1858
BsaHI GRCGYC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 544
BsaWI WCCGGW 1 cut(s) 844
Bsc4I CCNNNNNNNGG 1 cut(s) 1582
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 2 cut(s) 840, 1884
Bse3DI GCAATG 1 cut(s) 882
Bse8I GATNNNNATC 1 cut(s) 1858
BseCI ATCGAT 1 cut(s) 463
BseDI CCNNGG 1 cut(s) 544
BseGI GGATG 4 cut(s) 519, 689, 927, 1612
BseJI GATNNNNATC 1 cut(s) 1858
BseLI CCNNNNNNNGG 1 cut(s) 1582
BseMI GCAATG 1 cut(s) 882
BseMII CTCAG 3 cut(s) 824, 1610, 1826
BseNI ACTGG 2 cut(s) 840, 1884
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 5 cut(s) 264, 1105, 1108, 1387, 1849
Bsh1236I CGCG 1 cut(s) 1802
Bsh1285I CGRYCG 2 cut(s) 318, 467
BshNI GGYRCC 3 cut(s) 402, 935, 1195
BshVI ATCGAT 1 cut(s) 463
BsiEI CGRYCG 2 cut(s) 318, 467
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 2 cut(s) 545, 1369
BsiSI CCGG 3 cut(s) 406, 845, 1722
BslI CCNNNNNNNGG 1 cut(s) 1582
BsmAI GTCTC 2 cut(s) 132, 1241
BsoBI CYCGRG 2 cut(s) 545, 1369
Bsp1286I GDGCHC 1 cut(s) 522
Bsp1720I GCTNAGC 1 cut(s) 810
BspACI CCGC 5 cut(s) 415, 664, 1604, 1614, 1802
BspCNI CTCAG 3 cut(s) 823, 1611, 1825
BspDI ATCGAT 1 cut(s) 463
BspFNI CGCG 1 cut(s) 1802
BspHI TCATGA 1 cut(s) 1507
BspLI GGNNCC 4 cut(s) 404, 744, 937, 1197
BspMAI CTGCAG 1 cut(s) 1126
BspMI ACCTGC 1 cut(s) 1544
BspPI GGATC 5 cut(s) 393, 468, 481, 1221, 1384
BspT107I GGYRCC 3 cut(s) 402, 935, 1195
BsrDI GCAATG 1 cut(s) 882
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 2 cut(s) 840, 1884
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 1 cut(s) 544
BssNI GRCGYC 1 cut(s) 403
Bst4CI ACNGT 3 cut(s) 1109, 1323, 1752
Bst6I CTCTTC 3 cut(s) 12, 741, 1029
BstACI GRCGYC 1 cut(s) 403
BstAPI GCANNNNNTGC 2 cut(s) 761, 770
BstC8I GCNNGC 4 cut(s) 407, 596, 747, 1902
BstDEI CTNAG 5 cut(s) 810, 1136, 1442, 1619, 1812
BstF5I GGATG 4 cut(s) 519, 689, 927, 1612
BstFNI CGCG 1 cut(s) 1802
BstH2I RGCGCY 1 cut(s) 406
BstHHI GCGC 3 cut(s) 405, 1837, 1885
BstMAI GTCTC 2 cut(s) 132, 1241
BstMCI CGRYCG 2 cut(s) 318, 467
BstMWI GCNNNNNNNGC 6 cut(s) 623, 761, 770, 1137, 1610, 1808
BstNSI RCATGY 1 cut(s) 1254
BstSCI CCNGG 1 cut(s) 1721
BstSFI CTRYAG 1 cut(s) 1122
BstUI CGCG 1 cut(s) 1802
BstV1I GCAGC 5 cut(s) 264, 1105, 1108, 1387, 1849
BstX2I RGATCY 3 cut(s) 385, 486, 1226
BstYI RGATCY 3 cut(s) 385, 486, 1226
Bsu15I ATCGAT 1 cut(s) 463
BsuI GTATCC 1 cut(s) 1219
BsuTUI ATCGAT 1 cut(s) 463
BtsCI GGATG 4 cut(s) 519, 689, 927, 1612
BtsI GCAGTG 2 cut(s) 997, 1866
BtsIMutI CAGTG 5 cut(s) 997, 1114, 1616, 1748, 1866
BveI ACCTGC 1 cut(s) 1544
Cac8I GCNNGC 4 cut(s) 407, 596, 747, 1902
CciI TCATGA 1 cut(s) 1507
CfoI GCGC 3 cut(s) 405, 1837, 1885
Cfr10I RCCGGY 1 cut(s) 405
ClaI ATCGAT 1 cut(s) 463
Csp6I GTAC 3 cut(s) 332, 725, 1196
CviAII CATG 4 cut(s) 478, 1251, 1508, 1841
CviQI GTAC 3 cut(s) 332, 725, 1196
DdeI CTNAG 5 cut(s) 810, 1136, 1442, 1619, 1812
DinI GGCGCC 1 cut(s) 404
DraI TTTAAA 1 cut(s) 831
DraIII CACNNNGTG 2 cut(s) 1622, 1792
Eam1104I CTCTTC 3 cut(s) 12, 741, 1029
EarI CTCTTC 3 cut(s) 12, 741, 1029
EciI GGCGGA 1 cut(s) 430
Ecl136II GAGCTC 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 522
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 3 cut(s) 246, 374, 683
Eco88I CYCGRG 2 cut(s) 545, 1369
EcoICRI GAGCTC 1 cut(s) 520
EcoRI GAATTC 2 cut(s) 1429, 1692
EcoT38I GRGCYC 1 cut(s) 522
EgeI GGCGCC 1 cut(s) 404
EheI GGCGCC 1 cut(s) 404
FaeI CATG 4 cut(s) 481, 1254, 1511, 1844
FalI AAGNNNNNCTT 4 cut(s) 31, 63, 523, 555
FatI CATG 4 cut(s) 477, 1250, 1507, 1840
FbaI TGATCA 1 cut(s) 669
Fnu4HI GCNGC 6 cut(s) 253, 1119, 1122, 1401, 1614, 1838
FokI GGATG 4 cut(s) 526, 676, 934, 1619
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 6 cut(s) 253, 1119, 1122, 1401, 1614, 1838
FspBI CTAG 5 cut(s) 1052, 1412, 1832, 1889, 1911
GlaI GCGC 3 cut(s) 404, 1836, 1884
GluI GCNGC 6 cut(s) 253, 1119, 1122, 1401, 1614, 1838
GsuI CTGGAG 1 cut(s) 1834
HaeII RGCGCY 1 cut(s) 406
HapII CCGG 3 cut(s) 406, 845, 1722
HhaI GCGC 3 cut(s) 405, 1837, 1885
Hin1I GRCGYC 1 cut(s) 403
Hin1II CATG 4 cut(s) 481, 1254, 1511, 1844
Hin6I GCGC 3 cut(s) 403, 1835, 1883
HinP1I GCGC 3 cut(s) 403, 1835, 1883
HincII GTYRAC 1 cut(s) 1041
HindII GTYRAC 1 cut(s) 1041
HpaII CCGG 3 cut(s) 406, 845, 1722
HphI GGTGA 6 cut(s) 98, 829, 851, 1177, 1601, 1856
Hpy166II GTNNAC 3 cut(s) 796, 1041, 1293
Hpy8I GTNNAC 3 cut(s) 796, 1041, 1293
Hpy99I CGWCG 1 cut(s) 1649
HpyAV CCTTC 6 cut(s) 912, 967, 1156, 1311, 1491, 1580
HpyCH4III ACNGT 3 cut(s) 1109, 1323, 1752
HpyCH4IV ACGT 2 cut(s) 297, 1406
HpyF10VI GCNNNNNNNGC 6 cut(s) 623, 761, 770, 1137, 1610, 1808
HpyF3I CTNAG 5 cut(s) 810, 1136, 1442, 1619, 1812
HpySE526I ACGT 2 cut(s) 297, 1406
Hsp92I GRCGYC 1 cut(s) 403
Hsp92II CATG 4 cut(s) 481, 1254, 1511, 1844
HspAI GCGC 3 cut(s) 403, 1835, 1883
KasI GGCGCC 1 cut(s) 402
KpnI GGTACC 1 cut(s) 1199
KroI GCCGGC 1 cut(s) 405
KroNI GCCGGC 1 cut(s) 407
Ksp22I TGATCA 1 cut(s) 669
LmnI GCTCC 4 cut(s) 517, 708, 742, 1725
Lsp1109I GCAGC 5 cut(s) 264, 1105, 1108, 1387, 1849
LweI GCATC 6 cut(s) 690, 698, 758, 807, 1480, 1737
MaeI CTAG 5 cut(s) 1052, 1412, 1832, 1889, 1911
MaeII ACGT 2 cut(s) 297, 1406
MaeIII GTNAC 9 cut(s) 715, 1154, 1165, 1237, 1362, 1407, 1792, 1844, 1913
MflI RGATCY 3 cut(s) 385, 486, 1226
MhlI GDGCHC 1 cut(s) 522
Mly113I GGCGCC 1 cut(s) 403
MlyI GAGTC 3 cut(s) 727, 1814, 1841
MmeI TCCRAC 1 cut(s) 130
MroNI GCCGGC 1 cut(s) 405
MroXI GAANNNNTTC 2 cut(s) 786, 1769
MspA1I CMGCKG 1 cut(s) 664
MspI CCGG 3 cut(s) 406, 845, 1722
MspR9I CCNGG 1 cut(s) 1723
MvnI CGCG 1 cut(s) 1802
MwoI GCNNNNNNNGC 6 cut(s) 623, 761, 770, 1137, 1610, 1808
NaeI GCCGGC 1 cut(s) 407
NarI GGCGCC 1 cut(s) 403
NciI CCSGG 1 cut(s) 1723
NgoMIV GCCGGC 1 cut(s) 405
NlaIII CATG 4 cut(s) 481, 1254, 1511, 1844
NlaIV GGNNCC 4 cut(s) 404, 744, 937, 1197
NmuCI GTSAC 6 cut(s) 715, 1154, 1165, 1407, 1792, 1844
NspI RCATGY 1 cut(s) 1254
PaeR7I CTCGAG 1 cut(s) 1369
PagI TCATGA 1 cut(s) 1507
PaqCI CACCTGC 1 cut(s) 1544
PdiI GCCGGC 1 cut(s) 407
PdmI GAANNNNTTC 2 cut(s) 786, 1769
PfeI GAWTC 8 cut(s) 187, 215, 418, 782, 1074, 1219, 1285, 1718
PflMI CCANNNNNTGG 1 cut(s) 1582
PfoI TCCNGGA 1 cut(s) 1721
PkrI GCNGC 6 cut(s) 254, 1120, 1123, 1402, 1615, 1839
Ple19I CGATCG 2 cut(s) 318, 467
PleI GAGTC 3 cut(s) 727, 1813, 1841
PluTI GGCGCC 1 cut(s) 406
PpsI GAGTC 3 cut(s) 727, 1813, 1841
Psp124BI GAGCTC 1 cut(s) 522
PspN4I GGNNCC 4 cut(s) 404, 744, 937, 1197
PstI CTGCAG 1 cut(s) 1126
PsuI RGATCY 3 cut(s) 385, 486, 1226
PvuI CGATCG 2 cut(s) 318, 467
RsaI GTAC 3 cut(s) 333, 726, 1197
RsaNI GTAC 3 cut(s) 332, 725, 1196
SacI GAGCTC 1 cut(s) 522
SatI GCNGC 6 cut(s) 253, 1119, 1122, 1401, 1614, 1838
ScaI AGTACT 1 cut(s) 726
SchI GAGTC 3 cut(s) 727, 1814, 1841
ScrFI CCNGG 1 cut(s) 1723
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 6 cut(s) 690, 698, 758, 807, 1480, 1737
SfcI CTRYAG 1 cut(s) 1122
SfoI GGCGCC 1 cut(s) 404
Sfr274I CTCGAG 1 cut(s) 1369
SlaI CTCGAG 1 cut(s) 1369
SmlI CTYRAG 4 cut(s) 508, 1369, 1485, 1737
SmoI CTYRAG 4 cut(s) 508, 1369, 1485, 1737
SsiI CCGC 5 cut(s) 415, 664, 1604, 1614, 1802
SspDI GGCGCC 1 cut(s) 402
SspI AATATT 1 cut(s) 1581
SspMI CTAG 5 cut(s) 1052, 1412, 1832, 1889, 1911
SstI GAGCTC 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 1721
TaaI ACNGT 3 cut(s) 1109, 1323, 1752
TaiI ACGT 2 cut(s) 300, 1409
TaqI TCGA 7 cut(s) 209, 241, 463, 600, 1370, 1451, 1716
TatI WGTACW 1 cut(s) 724
TauI GCSGC 1 cut(s) 1616
TfiI GAWTC 8 cut(s) 187, 215, 418, 782, 1074, 1219, 1285, 1718
TscAI CASTG 5 cut(s) 997, 1114, 1623, 1755, 1873
TseFI GTSAC 6 cut(s) 715, 1154, 1165, 1407, 1792, 1844
TseI GCWGC 5 cut(s) 252, 1118, 1121, 1400, 1837
Tsp45I GTSAC 6 cut(s) 715, 1154, 1165, 1407, 1792, 1844
TspDTI ATGAA 9 cut(s) 108, 171, 186, 354, 938, 1232, 1422, 1496, 1623
TspGWI ACGGA 2 cut(s) 1184, 1677
TspRI CASTG 5 cut(s) 997, 1114, 1623, 1755, 1873
Van91I CCANNNNNTGG 1 cut(s) 1582
XapI RAATTY 5 cut(s) 104, 1000, 1189, 1429, 1692
XceI RCATGY 1 cut(s) 1254
XhoI CTCGAG 1 cut(s) 1369
XmnI GAANNNNTTC 2 cut(s) 786, 1769
XspI CTAG 5 cut(s) 1052, 1412, 1832, 1889, 1911
ZrmI AGTACT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.