U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g02490 FvH4_7g02490 FvH4_7g02490 |
| malus_domestica | MD02G1293000.v1.1 MD07G1034100.v1.1 |
| prunus_persica | Prupe.2G030600_v2.0.a1 Prupe.2G030600_v2.0.a1 |
| pyrus_communis | pycom02g24740 pycom07g02410 |
| rosa_chinensis | RchiOBHm_Chr1g0321131 |
| rosa_laevigata | RLG00000030449 |
| rosa_multiflora | Rmu_sc0004660.1_g000007 Rmu_sc0007977.1_g000007 |
| rosa_roxburghii | Rroxscaffold_160G00433740 Rroxscaffold_4G00328070 |
| rosa_rugosa | Rorug01G0031200 Rorug01G0031300 |
| rosa_samantha | Rh1AG043200 Rh1BG039900 Rh1CG045300 Rh1DG049900 |
| rosa_wichuraiana | Rw0G001070 Rw1G003790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1544 |
| Acc36I | ACCTGC | 1 cut(s) | 1544 |
| Acc65I | GGTACC | 1 cut(s) | 1195 |
| AccB1I | GGYRCC | 3 cut(s) | 402, 935, 1195 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1582 |
| AccII | CGCG | 1 cut(s) | 1802 |
| AciI | CCGC | 5 cut(s) | 415, 664, 1604, 1614, 1802 |
| AclWI | GGATC | 5 cut(s) | 393, 468, 481, 1221, 1384 |
| AcsI | RAATTY | 5 cut(s) | 104, 1000, 1189, 1429, 1692 |
| AcuI | CTGAAG | 3 cut(s) | 246, 374, 683 |
| AcyI | GRCGYC | 1 cut(s) | 403 |
| AdeI | CACNNNGTG | 2 cut(s) | 1622, 1792 |
| AfaI | GTAC | 3 cut(s) | 333, 726, 1197 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1582 |
| AgsI | TTSAA | 9 cut(s) | 124, 422, 566, 631, 854, 980, 1000, 1020, 1858 |
| Alw21I | GWGCWC | 1 cut(s) | 522 |
| Alw26I | GTCTC | 2 cut(s) | 132, 1241 |
| AlwI | GGATC | 5 cut(s) | 393, 468, 481, 1221, 1384 |
| Ama87I | CYCGRG | 2 cut(s) | 545, 1369 |
| ApeKI | GCWGC | 5 cut(s) | 252, 1118, 1121, 1400, 1837 |
| ApoI | RAATTY | 5 cut(s) | 104, 1000, 1189, 1429, 1692 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 786, 1769 |
| Asp718I | GGTACC | 1 cut(s) | 1195 |
| AspLEI | GCGC | 3 cut(s) | 405, 1837, 1885 |
| AsuC2I | CCSGG | 1 cut(s) | 1723 |
| AsuHPI | GGTGA | 6 cut(s) | 98, 829, 851, 1177, 1601, 1856 |
| AvaI | CYCGRG | 2 cut(s) | 545, 1369 |
| BanI | GGYRCC | 3 cut(s) | 402, 935, 1195 |
| BanII | GRGCYC | 1 cut(s) | 522 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 9, 41 |
| Bbv12I | GWGCWC | 1 cut(s) | 522 |
| BbvI | GCAGC | 5 cut(s) | 264, 1105, 1108, 1387, 1849 |
| BccI | CCATC | 6 cut(s) | 487, 508, 958, 1149, 1505, 1709 |
| BceAI | ACGGC | 1 cut(s) | 923 |
| BciVI | GTATCC | 1 cut(s) | 1219 |
| BclI | TGATCA | 1 cut(s) | 669 |
| BcnI | CCSGG | 1 cut(s) | 1723 |
| BcoDI | GTCTC | 2 cut(s) | 132, 1241 |
| BfaI | CTAG | 5 cut(s) | 1052, 1412, 1832, 1889, 1911 |
| BfmI | CTRYAG | 1 cut(s) | 1122 |
| BfoI | RGCGCY | 1 cut(s) | 406 |
| BfuAI | ACCTGC | 1 cut(s) | 1544 |
| BfuI | GTATCC | 1 cut(s) | 1219 |
| BisI | GCNGC | 6 cut(s) | 253, 1119, 1122, 1401, 1614, 1838 |
| BlpI | GCTNAGC | 1 cut(s) | 810 |
| BlsI | GCNGC | 6 cut(s) | 254, 1120, 1123, 1402, 1615, 1839 |
| BmcAI | AGTACT | 1 cut(s) | 726 |
| Bme1390I | CCNGG | 1 cut(s) | 1723 |
| BmeT110I | CYCGRG | 2 cut(s) | 545, 1369 |
| BmiI | GGNNCC | 4 cut(s) | 404, 744, 937, 1197 |
| BmrFI | CCNGG | 1 cut(s) | 1723 |
| BmsI | GCATC | 6 cut(s) | 690, 698, 758, 807, 1480, 1737 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 528, 560 |
| BpmI | CTGGAG | 1 cut(s) | 1834 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1812 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 810 |
| BpuEI | CTTGAG | 3 cut(s) | 493, 1470, 1722 |
| BpuMI | CCSGG | 1 cut(s) | 1723 |
| Bsa29I | ATCGAT | 1 cut(s) | 463 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1858 |
| BsaHI | GRCGYC | 1 cut(s) | 403 |
| BsaJI | CCNNGG | 1 cut(s) | 544 |
| BsaWI | WCCGGW | 1 cut(s) | 844 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1582 |
| Bse118I | RCCGGY | 1 cut(s) | 405 |
| Bse1I | ACTGG | 2 cut(s) | 840, 1884 |
| Bse3DI | GCAATG | 1 cut(s) | 882 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1858 |
| BseCI | ATCGAT | 1 cut(s) | 463 |
| BseDI | CCNNGG | 1 cut(s) | 544 |
| BseGI | GGATG | 4 cut(s) | 519, 689, 927, 1612 |
| BseJI | GATNNNNATC | 1 cut(s) | 1858 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1582 |
| BseMI | GCAATG | 1 cut(s) | 882 |
| BseMII | CTCAG | 3 cut(s) | 824, 1610, 1826 |
| BseNI | ACTGG | 2 cut(s) | 840, 1884 |
| BseRI | GAGGAG | 1 cut(s) | 47 |
| BseXI | GCAGC | 5 cut(s) | 264, 1105, 1108, 1387, 1849 |
| Bsh1236I | CGCG | 1 cut(s) | 1802 |
| Bsh1285I | CGRYCG | 2 cut(s) | 318, 467 |
| BshNI | GGYRCC | 3 cut(s) | 402, 935, 1195 |
| BshVI | ATCGAT | 1 cut(s) | 463 |
| BsiEI | CGRYCG | 2 cut(s) | 318, 467 |
| BsiHKAI | GWGCWC | 1 cut(s) | 522 |
| BsiHKCI | CYCGRG | 2 cut(s) | 545, 1369 |
| BsiSI | CCGG | 3 cut(s) | 406, 845, 1722 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1582 |
| BsmAI | GTCTC | 2 cut(s) | 132, 1241 |
| BsoBI | CYCGRG | 2 cut(s) | 545, 1369 |
| Bsp1286I | GDGCHC | 1 cut(s) | 522 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 810 |
| BspACI | CCGC | 5 cut(s) | 415, 664, 1604, 1614, 1802 |
| BspCNI | CTCAG | 3 cut(s) | 823, 1611, 1825 |
| BspDI | ATCGAT | 1 cut(s) | 463 |
| BspFNI | CGCG | 1 cut(s) | 1802 |
| BspHI | TCATGA | 1 cut(s) | 1507 |
| BspLI | GGNNCC | 4 cut(s) | 404, 744, 937, 1197 |
| BspMAI | CTGCAG | 1 cut(s) | 1126 |
| BspMI | ACCTGC | 1 cut(s) | 1544 |
| BspPI | GGATC | 5 cut(s) | 393, 468, 481, 1221, 1384 |
| BspT107I | GGYRCC | 3 cut(s) | 402, 935, 1195 |
| BsrDI | GCAATG | 1 cut(s) | 882 |
| BsrFI | RCCGGY | 1 cut(s) | 405 |
| BsrI | ACTGG | 2 cut(s) | 840, 1884 |
| BssAI | RCCGGY | 1 cut(s) | 405 |
| BssECI | CCNNGG | 1 cut(s) | 544 |
| BssNI | GRCGYC | 1 cut(s) | 403 |
| Bst4CI | ACNGT | 3 cut(s) | 1109, 1323, 1752 |
| Bst6I | CTCTTC | 3 cut(s) | 12, 741, 1029 |
| BstACI | GRCGYC | 1 cut(s) | 403 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 761, 770 |
| BstC8I | GCNNGC | 4 cut(s) | 407, 596, 747, 1902 |
| BstDEI | CTNAG | 5 cut(s) | 810, 1136, 1442, 1619, 1812 |
| BstF5I | GGATG | 4 cut(s) | 519, 689, 927, 1612 |
| BstFNI | CGCG | 1 cut(s) | 1802 |
| BstH2I | RGCGCY | 1 cut(s) | 406 |
| BstHHI | GCGC | 3 cut(s) | 405, 1837, 1885 |
| BstMAI | GTCTC | 2 cut(s) | 132, 1241 |
| BstMCI | CGRYCG | 2 cut(s) | 318, 467 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 623, 761, 770, 1137, 1610, 1808 |
| BstNSI | RCATGY | 1 cut(s) | 1254 |
| BstSCI | CCNGG | 1 cut(s) | 1721 |
| BstSFI | CTRYAG | 1 cut(s) | 1122 |
| BstUI | CGCG | 1 cut(s) | 1802 |
| BstV1I | GCAGC | 5 cut(s) | 264, 1105, 1108, 1387, 1849 |
| BstX2I | RGATCY | 3 cut(s) | 385, 486, 1226 |
| BstYI | RGATCY | 3 cut(s) | 385, 486, 1226 |
| Bsu15I | ATCGAT | 1 cut(s) | 463 |
| BsuI | GTATCC | 1 cut(s) | 1219 |
| BsuTUI | ATCGAT | 1 cut(s) | 463 |
| BtsCI | GGATG | 4 cut(s) | 519, 689, 927, 1612 |
| BtsI | GCAGTG | 2 cut(s) | 997, 1866 |
| BtsIMutI | CAGTG | 5 cut(s) | 997, 1114, 1616, 1748, 1866 |
| BveI | ACCTGC | 1 cut(s) | 1544 |
| Cac8I | GCNNGC | 4 cut(s) | 407, 596, 747, 1902 |
| CciI | TCATGA | 1 cut(s) | 1507 |
| CfoI | GCGC | 3 cut(s) | 405, 1837, 1885 |
| Cfr10I | RCCGGY | 1 cut(s) | 405 |
| ClaI | ATCGAT | 1 cut(s) | 463 |
| Csp6I | GTAC | 3 cut(s) | 332, 725, 1196 |
| CviAII | CATG | 4 cut(s) | 478, 1251, 1508, 1841 |
| CviQI | GTAC | 3 cut(s) | 332, 725, 1196 |
| DdeI | CTNAG | 5 cut(s) | 810, 1136, 1442, 1619, 1812 |
| DinI | GGCGCC | 1 cut(s) | 404 |
| DraI | TTTAAA | 1 cut(s) | 831 |
| DraIII | CACNNNGTG | 2 cut(s) | 1622, 1792 |
| Eam1104I | CTCTTC | 3 cut(s) | 12, 741, 1029 |
| EarI | CTCTTC | 3 cut(s) | 12, 741, 1029 |
| EciI | GGCGGA | 1 cut(s) | 430 |
| Ecl136II | GAGCTC | 1 cut(s) | 520 |
| Eco24I | GRGCYC | 1 cut(s) | 522 |
| Eco53kI | GAGCTC | 1 cut(s) | 520 |
| Eco57I | CTGAAG | 3 cut(s) | 246, 374, 683 |
| Eco88I | CYCGRG | 2 cut(s) | 545, 1369 |
| EcoICRI | GAGCTC | 1 cut(s) | 520 |
| EcoRI | GAATTC | 2 cut(s) | 1429, 1692 |
| EcoT38I | GRGCYC | 1 cut(s) | 522 |
| EgeI | GGCGCC | 1 cut(s) | 404 |
| EheI | GGCGCC | 1 cut(s) | 404 |
| FaeI | CATG | 4 cut(s) | 481, 1254, 1511, 1844 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 31, 63, 523, 555 |
| FatI | CATG | 4 cut(s) | 477, 1250, 1507, 1840 |
| FbaI | TGATCA | 1 cut(s) | 669 |
| Fnu4HI | GCNGC | 6 cut(s) | 253, 1119, 1122, 1401, 1614, 1838 |
| FokI | GGATG | 4 cut(s) | 526, 676, 934, 1619 |
| FriOI | GRGCYC | 1 cut(s) | 522 |
| Fsp4HI | GCNGC | 6 cut(s) | 253, 1119, 1122, 1401, 1614, 1838 |
| FspBI | CTAG | 5 cut(s) | 1052, 1412, 1832, 1889, 1911 |
| GlaI | GCGC | 3 cut(s) | 404, 1836, 1884 |
| GluI | GCNGC | 6 cut(s) | 253, 1119, 1122, 1401, 1614, 1838 |
| GsuI | CTGGAG | 1 cut(s) | 1834 |
| HaeII | RGCGCY | 1 cut(s) | 406 |
| HapII | CCGG | 3 cut(s) | 406, 845, 1722 |
| HhaI | GCGC | 3 cut(s) | 405, 1837, 1885 |
| Hin1I | GRCGYC | 1 cut(s) | 403 |
| Hin1II | CATG | 4 cut(s) | 481, 1254, 1511, 1844 |
| Hin6I | GCGC | 3 cut(s) | 403, 1835, 1883 |
| HinP1I | GCGC | 3 cut(s) | 403, 1835, 1883 |
| HincII | GTYRAC | 1 cut(s) | 1041 |
| HindII | GTYRAC | 1 cut(s) | 1041 |
| HpaII | CCGG | 3 cut(s) | 406, 845, 1722 |
| HphI | GGTGA | 6 cut(s) | 98, 829, 851, 1177, 1601, 1856 |
| Hpy166II | GTNNAC | 3 cut(s) | 796, 1041, 1293 |
| Hpy8I | GTNNAC | 3 cut(s) | 796, 1041, 1293 |
| Hpy99I | CGWCG | 1 cut(s) | 1649 |
| HpyAV | CCTTC | 6 cut(s) | 912, 967, 1156, 1311, 1491, 1580 |
| HpyCH4III | ACNGT | 3 cut(s) | 1109, 1323, 1752 |
| HpyCH4IV | ACGT | 2 cut(s) | 297, 1406 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 623, 761, 770, 1137, 1610, 1808 |
| HpyF3I | CTNAG | 5 cut(s) | 810, 1136, 1442, 1619, 1812 |
| HpySE526I | ACGT | 2 cut(s) | 297, 1406 |
| Hsp92I | GRCGYC | 1 cut(s) | 403 |
| Hsp92II | CATG | 4 cut(s) | 481, 1254, 1511, 1844 |
| HspAI | GCGC | 3 cut(s) | 403, 1835, 1883 |
| KasI | GGCGCC | 1 cut(s) | 402 |
| KpnI | GGTACC | 1 cut(s) | 1199 |
| KroI | GCCGGC | 1 cut(s) | 405 |
| KroNI | GCCGGC | 1 cut(s) | 407 |
| Ksp22I | TGATCA | 1 cut(s) | 669 |
| LmnI | GCTCC | 4 cut(s) | 517, 708, 742, 1725 |
| Lsp1109I | GCAGC | 5 cut(s) | 264, 1105, 1108, 1387, 1849 |
| LweI | GCATC | 6 cut(s) | 690, 698, 758, 807, 1480, 1737 |
| MaeI | CTAG | 5 cut(s) | 1052, 1412, 1832, 1889, 1911 |
| MaeII | ACGT | 2 cut(s) | 297, 1406 |
| MaeIII | GTNAC | 9 cut(s) | 715, 1154, 1165, 1237, 1362, 1407, 1792, 1844, 1913 |
| MflI | RGATCY | 3 cut(s) | 385, 486, 1226 |
| MhlI | GDGCHC | 1 cut(s) | 522 |
| Mly113I | GGCGCC | 1 cut(s) | 403 |
| MlyI | GAGTC | 3 cut(s) | 727, 1814, 1841 |
| MmeI | TCCRAC | 1 cut(s) | 130 |
| MroNI | GCCGGC | 1 cut(s) | 405 |
| MroXI | GAANNNNTTC | 2 cut(s) | 786, 1769 |
| MspA1I | CMGCKG | 1 cut(s) | 664 |
| MspI | CCGG | 3 cut(s) | 406, 845, 1722 |
| MspR9I | CCNGG | 1 cut(s) | 1723 |
| MvnI | CGCG | 1 cut(s) | 1802 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 623, 761, 770, 1137, 1610, 1808 |
| NaeI | GCCGGC | 1 cut(s) | 407 |
| NarI | GGCGCC | 1 cut(s) | 403 |
| NciI | CCSGG | 1 cut(s) | 1723 |
| NgoMIV | GCCGGC | 1 cut(s) | 405 |
| NlaIII | CATG | 4 cut(s) | 481, 1254, 1511, 1844 |
| NlaIV | GGNNCC | 4 cut(s) | 404, 744, 937, 1197 |
| NmuCI | GTSAC | 6 cut(s) | 715, 1154, 1165, 1407, 1792, 1844 |
| NspI | RCATGY | 1 cut(s) | 1254 |
| PaeR7I | CTCGAG | 1 cut(s) | 1369 |
| PagI | TCATGA | 1 cut(s) | 1507 |
| PaqCI | CACCTGC | 1 cut(s) | 1544 |
| PdiI | GCCGGC | 1 cut(s) | 407 |
| PdmI | GAANNNNTTC | 2 cut(s) | 786, 1769 |
| PfeI | GAWTC | 8 cut(s) | 187, 215, 418, 782, 1074, 1219, 1285, 1718 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1582 |
| PfoI | TCCNGGA | 1 cut(s) | 1721 |
| PkrI | GCNGC | 6 cut(s) | 254, 1120, 1123, 1402, 1615, 1839 |
| Ple19I | CGATCG | 2 cut(s) | 318, 467 |
| PleI | GAGTC | 3 cut(s) | 727, 1813, 1841 |
| PluTI | GGCGCC | 1 cut(s) | 406 |
| PpsI | GAGTC | 3 cut(s) | 727, 1813, 1841 |
| Psp124BI | GAGCTC | 1 cut(s) | 522 |
| PspN4I | GGNNCC | 4 cut(s) | 404, 744, 937, 1197 |
| PstI | CTGCAG | 1 cut(s) | 1126 |
| PsuI | RGATCY | 3 cut(s) | 385, 486, 1226 |
| PvuI | CGATCG | 2 cut(s) | 318, 467 |
| RsaI | GTAC | 3 cut(s) | 333, 726, 1197 |
| RsaNI | GTAC | 3 cut(s) | 332, 725, 1196 |
| SacI | GAGCTC | 1 cut(s) | 522 |
| SatI | GCNGC | 6 cut(s) | 253, 1119, 1122, 1401, 1614, 1838 |
| ScaI | AGTACT | 1 cut(s) | 726 |
| SchI | GAGTC | 3 cut(s) | 727, 1814, 1841 |
| ScrFI | CCNGG | 1 cut(s) | 1723 |
| SduI | GDGCHC | 1 cut(s) | 522 |
| SfaNI | GCATC | 6 cut(s) | 690, 698, 758, 807, 1480, 1737 |
| SfcI | CTRYAG | 1 cut(s) | 1122 |
| SfoI | GGCGCC | 1 cut(s) | 404 |
| Sfr274I | CTCGAG | 1 cut(s) | 1369 |
| SlaI | CTCGAG | 1 cut(s) | 1369 |
| SmlI | CTYRAG | 4 cut(s) | 508, 1369, 1485, 1737 |
| SmoI | CTYRAG | 4 cut(s) | 508, 1369, 1485, 1737 |
| SsiI | CCGC | 5 cut(s) | 415, 664, 1604, 1614, 1802 |
| SspDI | GGCGCC | 1 cut(s) | 402 |
| SspI | AATATT | 1 cut(s) | 1581 |
| SspMI | CTAG | 5 cut(s) | 1052, 1412, 1832, 1889, 1911 |
| SstI | GAGCTC | 1 cut(s) | 522 |
| StyD4I | CCNGG | 1 cut(s) | 1721 |
| TaaI | ACNGT | 3 cut(s) | 1109, 1323, 1752 |
| TaiI | ACGT | 2 cut(s) | 300, 1409 |
| TaqI | TCGA | 7 cut(s) | 209, 241, 463, 600, 1370, 1451, 1716 |
| TatI | WGTACW | 1 cut(s) | 724 |
| TauI | GCSGC | 1 cut(s) | 1616 |
| TfiI | GAWTC | 8 cut(s) | 187, 215, 418, 782, 1074, 1219, 1285, 1718 |
| TscAI | CASTG | 5 cut(s) | 997, 1114, 1623, 1755, 1873 |
| TseFI | GTSAC | 6 cut(s) | 715, 1154, 1165, 1407, 1792, 1844 |
| TseI | GCWGC | 5 cut(s) | 252, 1118, 1121, 1400, 1837 |
| Tsp45I | GTSAC | 6 cut(s) | 715, 1154, 1165, 1407, 1792, 1844 |
| TspDTI | ATGAA | 9 cut(s) | 108, 171, 186, 354, 938, 1232, 1422, 1496, 1623 |
| TspGWI | ACGGA | 2 cut(s) | 1184, 1677 |
| TspRI | CASTG | 5 cut(s) | 997, 1114, 1623, 1755, 1873 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1582 |
| XapI | RAATTY | 5 cut(s) | 104, 1000, 1189, 1429, 1692 |
| XceI | RCATGY | 1 cut(s) | 1254 |
| XhoI | CTCGAG | 1 cut(s) | 1369 |
| XmnI | GAANNNNTTC | 2 cut(s) | 786, 1769 |
| XspI | CTAG | 5 cut(s) | 1052, 1412, 1832, 1889, 1911 |
| ZrmI | AGTACT | 1 cut(s) | 726 |