U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g02490 FvH4_7g02490 FvH4_7g02490 |
| malus_domestica | MD02G1293000.v1.1 MD07G1034100.v1.1 |
| prunus_persica | Prupe.2G030600_v2.0.a1 Prupe.2G030600_v2.0.a1 |
| pyrus_communis | pycom02g24740 pycom07g02410 |
| rosa_chinensis | RchiOBHm_Chr1g0321131 |
| rosa_laevigata | RLG00000030449 |
| rosa_multiflora | Rmu_sc0004660.1_g000007 Rmu_sc0007977.1_g000007 |
| rosa_roxburghii | Rroxscaffold_160G00433740 Rroxscaffold_4G00328070 |
| rosa_rugosa | Rorug01G0031200 Rorug01G0031300 |
| rosa_samantha | Rh1AG043200 Rh1BG039900 Rh1CG045300 Rh1DG049900 |
| rosa_wichuraiana | Rw0G001070 Rw1G003790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 642, 1910 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1159, 1876, 1936 |
| AciI | CCGC | 2 cut(s) | 1907, 2016 |
| AclWI | GGATC | 4 cut(s) | 624, 835, 1738, 1921 |
| AcoI | YGGCCR | 2 cut(s) | 652, 1492 |
| AcsI | RAATTY | 3 cut(s) | 1587, 1783, 2004 |
| AcuI | CTGAAG | 2 cut(s) | 486, 614 |
| AcyI | GRCGYC | 1 cut(s) | 643 |
| AdeI | CACNNNGTG | 2 cut(s) | 1159, 1876 |
| AfaI | GTAC | 4 cut(s) | 187, 217, 573, 812 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1159, 1749, 1876, 1936 |
| AflII | CTTAAG | 1 cut(s) | 14 |
| AhlI | ACTAGT | 2 cut(s) | 218, 802 |
| AjnI | CCWGG | 3 cut(s) | 188, 2067, 2166 |
| AleI | CACNNNNGTG | 1 cut(s) | 1631 |
| Alw21I | GWGCWC | 6 cut(s) | 117, 876, 1083, 1974, 1981, 2178 |
| Alw26I | GTCTC | 2 cut(s) | 41, 2139 |
| AlwI | GGATC | 4 cut(s) | 624, 835, 1738, 1921 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 785, 2222 |
| AoxI | GGCC | 5 cut(s) | 106, 652, 1492, 1867, 2235 |
| ApeKI | GCWGC | 4 cut(s) | 1054, 1472, 1475, 1754 |
| ApoI | RAATTY | 3 cut(s) | 1587, 1783, 2004 |
| AseI | ATTAAT | 1 cut(s) | 405 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 81, 1140 |
| AspLEI | GCGC | 2 cut(s) | 556, 645 |
| AspS9I | GGNCC | 1 cut(s) | 2236 |
| AsuHPI | GGTGA | 6 cut(s) | 338, 389, 1205, 1708, 1891, 2210 |
| BalI | TGGCCA | 1 cut(s) | 1494 |
| BanI | GGYRCC | 2 cut(s) | 642, 1910 |
| BanII | GRGCYC | 1 cut(s) | 876 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 249, 281 |
| BbsI | GAAGAC | 1 cut(s) | 620 |
| Bbv12I | GWGCWC | 6 cut(s) | 117, 876, 1083, 1974, 1981, 2178 |
| BbvI | GCAGC | 4 cut(s) | 1066, 1459, 1462, 1741 |
| BccI | CCATC | 8 cut(s) | 523, 841, 862, 902, 1312, 1503, 1511, 1922 |
| BceAI | ACGGC | 4 cut(s) | 630, 639, 870, 1034 |
| BciT130I | CCWGG | 3 cut(s) | 190, 2069, 2168 |
| BciVI | GTATCC | 1 cut(s) | 1573 |
| BclI | TGATCA | 2 cut(s) | 880, 1023 |
| BcoDI | GTCTC | 2 cut(s) | 41, 2139 |
| BcuI | ACTAGT | 2 cut(s) | 218, 802 |
| BfmI | CTRYAG | 3 cut(s) | 1052, 1476, 1839 |
| BfoI | RGCGCY | 1 cut(s) | 646 |
| BfrI | CTTAAG | 1 cut(s) | 14 |
| BfuI | GTATCC | 1 cut(s) | 1573 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 651 |
| BisI | GCNGC | 4 cut(s) | 1055, 1473, 1476, 1755 |
| BlpI | GCTNAGC | 1 cut(s) | 1164 |
| BlsI | GCNGC | 4 cut(s) | 1056, 1474, 1477, 1756 |
| BmcAI | AGTACT | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 3 cut(s) | 190, 2069, 2168 |
| BmgT120I | GGNCC | 1 cut(s) | 2236 |
| BmiI | GGNNCC | 3 cut(s) | 644, 1098, 1912 |
| BmrFI | CCNGG | 3 cut(s) | 190, 2069, 2168 |
| BmsI | GCATC | 8 cut(s) | 694, 902, 1052, 1112, 1161, 1265, 1632, 1834 |
| BpiI | GAAGAC | 1 cut(s) | 620 |
| BpmI | CTGGAG | 2 cut(s) | 1708, 2188 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1164 |
| BpuEI | CTTGAG | 2 cut(s) | 847, 2076 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2212 |
| BsaHI | GRCGYC | 1 cut(s) | 643 |
| BsaI | GGTCTC | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 3 cut(s) | 24, 898, 2166 |
| BsaWI | WCCGGW | 2 cut(s) | 1198, 1641 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1159, 1749, 1876, 1936 |
| Bse1I | ACTGG | 2 cut(s) | 1194, 1725 |
| Bse3DI | GCAATG | 3 cut(s) | 164, 495, 1236 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2212 |
| BseBI | CCWGG | 3 cut(s) | 190, 2069, 2168 |
| BseDI | CCNNGG | 3 cut(s) | 24, 898, 2166 |
| BseGI | GGATG | 5 cut(s) | 706, 873, 893, 1011, 1256 |
| BseJI | GATNNNNATC | 1 cut(s) | 2212 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1159, 1749, 1876, 1936 |
| BseMI | GCAATG | 3 cut(s) | 164, 495, 1236 |
| BseMII | CTCAG | 2 cut(s) | 36, 1178 |
| BseNI | ACTGG | 2 cut(s) | 1194, 1725 |
| BseXI | GCAGC | 4 cut(s) | 1066, 1459, 1462, 1741 |
| BseYI | CCCAGC | 3 cut(s) | 725, 2190, 2238 |
| BsgI | GTGCAG | 2 cut(s) | 827, 1768 |
| BshFI | GGCC | 5 cut(s) | 108, 654, 1494, 1869, 2237 |
| BshNI | GGYRCC | 2 cut(s) | 642, 1910 |
| BsiHKAI | GWGCWC | 6 cut(s) | 117, 876, 1083, 1974, 1981, 2178 |
| BsiSI | CCGG | 3 cut(s) | 1199, 1642, 2051 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1159, 1749, 1876, 1936 |
| BsmAI | GTCTC | 2 cut(s) | 41, 2139 |
| BsmI | GAATGC | 1 cut(s) | 2046 |
| BsnI | GGCC | 5 cut(s) | 108, 654, 1494, 1869, 2237 |
| Bso31I | GGTCTC | 1 cut(s) | 41 |
| Bsp1286I | GDGCHC | 6 cut(s) | 117, 876, 1083, 1974, 1981, 2178 |
| Bsp143I | GATC | 9 cut(s) | 88, 616, 840, 880, 1023, 1730, 1926, 2055, 2182 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1164 |
| BspACI | CCGC | 2 cut(s) | 1907, 2016 |
| BspANI | GGCC | 5 cut(s) | 108, 654, 1494, 1869, 2237 |
| BspCNI | CTCAG | 2 cut(s) | 37, 1177 |
| BspHI | TCATGA | 2 cut(s) | 85, 1083 |
| BspLI | GGNNCC | 3 cut(s) | 644, 1098, 1912 |
| BspMAI | CTGCAG | 3 cut(s) | 1056, 1480, 1843 |
| BspPI | GGATC | 4 cut(s) | 624, 835, 1738, 1921 |
| BspQI | GCTCTTC | 1 cut(s) | 1383 |
| BspT107I | GGYRCC | 2 cut(s) | 642, 1910 |
| BspTI | CTTAAG | 1 cut(s) | 14 |
| BspTNI | GGTCTC | 1 cut(s) | 41 |
| BsrDI | GCAATG | 3 cut(s) | 164, 495, 1236 |
| BsrI | ACTGG | 2 cut(s) | 1194, 1725 |
| BssECI | CCNNGG | 3 cut(s) | 24, 898, 2166 |
| BssMI | GATC | 9 cut(s) | 88, 616, 840, 880, 1023, 1730, 1926, 2055, 2182 |
| BssNI | GRCGYC | 1 cut(s) | 643 |
| BssT1I | CCWWGG | 2 cut(s) | 24, 898 |
| Bst2UI | CCWGG | 3 cut(s) | 190, 2069, 2168 |
| Bst4CI | ACNGT | 3 cut(s) | 1289, 1463, 2106 |
| Bst6I | CTCTTC | 4 cut(s) | 252, 576, 1067, 1383 |
| BstACI | GRCGYC | 1 cut(s) | 643 |
| BstAFI | CTTAAG | 1 cut(s) | 14 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1115, 1124 |
| BstC8I | GCNNGC | 5 cut(s) | 21, 1101, 1224, 1539, 2235 |
| BstDEI | CTNAG | 2 cut(s) | 45, 1164 |
| BstF5I | GGATG | 5 cut(s) | 706, 873, 893, 1011, 1256 |
| BstH2I | RGCGCY | 1 cut(s) | 646 |
| BstHHI | GCGC | 2 cut(s) | 556, 645 |
| BstKTI | GATC | 9 cut(s) | 91, 619, 843, 883, 1026, 1733, 1929, 2058, 2185 |
| BstMAI | GTCTC | 2 cut(s) | 41, 2139 |
| BstMBI | GATC | 9 cut(s) | 88, 616, 840, 880, 1023, 1730, 1926, 2055, 2182 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 651, 805, 977, 1115, 1124, 1390, 1491, 1964, 2239 |
| BstNI | CCWGG | 3 cut(s) | 190, 2069, 2168 |
| BstSCI | CCNGG | 3 cut(s) | 188, 2067, 2166 |
| BstSFI | CTRYAG | 3 cut(s) | 1052, 1476, 1839 |
| BstV1I | GCAGC | 4 cut(s) | 1066, 1459, 1462, 1741 |
| BstV2I | GAAGAC | 1 cut(s) | 620 |
| BstX2I | RGATCY | 2 cut(s) | 616, 840 |
| BstYI | RGATCY | 2 cut(s) | 616, 840 |
| BsuI | GTATCC | 1 cut(s) | 1573 |
| BsuRI | GGCC | 5 cut(s) | 108, 654, 1494, 1869, 2237 |
| BtsCI | GGATG | 5 cut(s) | 706, 873, 893, 1011, 1256 |
| BtsI | GCAGTG | 3 cut(s) | 400, 1351, 1870 |
| BtsIMutI | CAGTG | 8 cut(s) | 400, 876, 1351, 1468, 1513, 1732, 1870, 2102 |
| Cac8I | GCNNGC | 5 cut(s) | 21, 1101, 1224, 1539, 2235 |
| CaiI | CAGNNNCTG | 2 cut(s) | 785, 2222 |
| CciI | TCATGA | 2 cut(s) | 85, 1083 |
| CfoI | GCGC | 2 cut(s) | 556, 645 |
| Cfr13I | GGNCC | 1 cut(s) | 2236 |
| CseI | GACGC | 1 cut(s) | 2071 |
| CsiI | ACCWGGT | 1 cut(s) | 188 |
| Csp6I | GTAC | 4 cut(s) | 186, 216, 572, 811 |
| CviAII | CATG | 7 cut(s) | 86, 722, 832, 1084, 1691, 1862, 1997 |
| CviQI | GTAC | 4 cut(s) | 186, 216, 572, 811 |
| DdeI | CTNAG | 2 cut(s) | 45, 1164 |
| DinI | GGCGCC | 1 cut(s) | 644 |
| DpnI | GATC | 9 cut(s) | 90, 618, 842, 882, 1025, 1732, 1928, 2057, 2184 |
| DpnII | GATC | 9 cut(s) | 88, 616, 840, 880, 1023, 1730, 1926, 2055, 2182 |
| DraIII | CACNNNGTG | 2 cut(s) | 1159, 1876 |
| EaeI | YGGCCR | 2 cut(s) | 652, 1492 |
| Eam1104I | CTCTTC | 4 cut(s) | 252, 576, 1067, 1383 |
| EarI | CTCTTC | 4 cut(s) | 252, 576, 1067, 1383 |
| Ecl136II | GAGCTC | 1 cut(s) | 874 |
| Eco130I | CCWWGG | 2 cut(s) | 24, 898 |
| Eco147I | AGGCCT | 1 cut(s) | 108 |
| Eco24I | GRGCYC | 1 cut(s) | 876 |
| Eco31I | GGTCTC | 1 cut(s) | 41 |
| Eco53kI | GAGCTC | 1 cut(s) | 874 |
| Eco57I | CTGAAG | 2 cut(s) | 486, 614 |
| EcoICRI | GAGCTC | 1 cut(s) | 874 |
| EcoRI | GAATTC | 1 cut(s) | 1783 |
| EcoRII | CCWGG | 3 cut(s) | 188, 2067, 2166 |
| EcoT14I | CCWWGG | 2 cut(s) | 24, 898 |
| EcoT38I | GRGCYC | 1 cut(s) | 876 |
| EgeI | GGCGCC | 1 cut(s) | 644 |
| EheI | GGCGCC | 1 cut(s) | 644 |
| ErhI | CCWWGG | 2 cut(s) | 24, 898 |
| FaeI | CATG | 7 cut(s) | 89, 725, 835, 1087, 1694, 1865, 2000 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1807, 1839 |
| FatI | CATG | 7 cut(s) | 85, 721, 831, 1083, 1690, 1861, 1996 |
| FauI | CCCGC | 1 cut(s) | 1900 |
| FauNDI | CATATG | 1 cut(s) | 774 |
| FbaI | TGATCA | 2 cut(s) | 880, 1023 |
| Fnu4HI | GCNGC | 4 cut(s) | 1055, 1473, 1476, 1755 |
| FokI | GGATG | 5 cut(s) | 713, 880, 880, 998, 1243 |
| FriOI | GRGCYC | 1 cut(s) | 876 |
| Fsp4HI | GCNGC | 4 cut(s) | 1055, 1473, 1476, 1755 |
| GlaI | GCGC | 2 cut(s) | 555, 644 |
| GluI | GCNGC | 4 cut(s) | 1055, 1473, 1476, 1755 |
| GsaI | CCCAGC | 3 cut(s) | 729, 2194, 2242 |
| GsuI | CTGGAG | 2 cut(s) | 1708, 2188 |
| HaeII | RGCGCY | 1 cut(s) | 646 |
| HaeIII | GGCC | 5 cut(s) | 108, 654, 1494, 1869, 2237 |
| HapII | CCGG | 3 cut(s) | 1199, 1642, 2051 |
| HgaI | GACGC | 1 cut(s) | 2071 |
| HhaI | GCGC | 2 cut(s) | 556, 645 |
| Hin1I | GRCGYC | 1 cut(s) | 643 |
| Hin1II | CATG | 7 cut(s) | 89, 725, 835, 1087, 1694, 1865, 2000 |
| Hin6I | GCGC | 2 cut(s) | 554, 643 |
| HinP1I | GCGC | 2 cut(s) | 554, 643 |
| HincII | GTYRAC | 1 cut(s) | 1150 |
| HindII | GTYRAC | 1 cut(s) | 1150 |
| HinfI | GANTC | 8 cut(s) | 227, 427, 1136, 1354, 1699, 2072, 2159, 2201 |
| HpaI | GTTAAC | 1 cut(s) | 1150 |
| HpaII | CCGG | 3 cut(s) | 1199, 1642, 2051 |
| HphI | GGTGA | 6 cut(s) | 338, 389, 1205, 1708, 1891, 2210 |
| Hpy166II | GTNNAC | 3 cut(s) | 138, 1150, 1647 |
| Hpy188I | TCNGA | 7 cut(s) | 426, 505, 829, 932, 1135, 1585, 1660 |
| Hpy8I | GTNNAC | 3 cut(s) | 138, 1150, 1647 |
| Hpy99I | CGWCG | 1 cut(s) | 856 |
| HpyAV | CCTTC | 5 cut(s) | 142, 815, 1273, 1845, 1934 |
| HpyCH4III | ACNGT | 3 cut(s) | 1289, 1463, 2106 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 651, 805, 977, 1115, 1124, 1390, 1491, 1964, 2239 |
| HpyF3I | CTNAG | 2 cut(s) | 45, 1164 |
| Hsp92I | GRCGYC | 1 cut(s) | 643 |
| Hsp92II | CATG | 7 cut(s) | 89, 725, 835, 1087, 1694, 1865, 2000 |
| HspAI | GCGC | 2 cut(s) | 554, 643 |
| KasI | GGCGCC | 1 cut(s) | 642 |
| Ksp22I | TGATCA | 2 cut(s) | 880, 1023 |
| KspAI | GTTAAC | 1 cut(s) | 1150 |
| Kzo9I | GATC | 9 cut(s) | 88, 616, 840, 880, 1023, 1730, 1926, 2055, 2182 |
| LguI | GCTCTTC | 1 cut(s) | 1383 |
| LmnI | GCTCC | 4 cut(s) | 871, 1096, 1341, 2079 |
| Lsp1109I | GCAGC | 4 cut(s) | 1066, 1459, 1462, 1741 |
| LweI | GCATC | 8 cut(s) | 694, 902, 1052, 1112, 1161, 1265, 1632, 1834 |
| MabI | ACCWGGT | 1 cut(s) | 188 |
| MaeIII | GTNAC | 7 cut(s) | 752, 788, 1069, 1519, 1716, 2198, 2267 |
| MalI | GATC | 9 cut(s) | 90, 618, 842, 882, 1025, 1732, 1928, 2057, 2184 |
| MboI | GATC | 9 cut(s) | 88, 616, 840, 880, 1023, 1730, 1926, 2055, 2182 |
| MboII | GAAGA | 9 cut(s) | 269, 593, 620, 917, 1054, 1281, 1400, 1490, 2131 |
| MfeI | CAATTG | 2 cut(s) | 314, 915 |
| MflI | RGATCY | 2 cut(s) | 616, 840 |
| MhlI | GDGCHC | 6 cut(s) | 117, 876, 1083, 1974, 1981, 2178 |
| MlsI | TGGCCA | 1 cut(s) | 1494 |
| MluNI | TGGCCA | 1 cut(s) | 1494 |
| Mly113I | GGCGCC | 1 cut(s) | 643 |
| MlyI | GAGTC | 1 cut(s) | 2195 |
| MmeI | TCCRAC | 2 cut(s) | 228, 1039 |
| Mox20I | TGGCCA | 1 cut(s) | 1494 |
| MroXI | GAANNNNTTC | 2 cut(s) | 81, 1140 |
| MscI | TGGCCA | 1 cut(s) | 1494 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1631, 1816 |
| Msp20I | TGGCCA | 1 cut(s) | 1494 |
| MspA1I | CMGCKG | 1 cut(s) | 1675 |
| MspCI | CTTAAG | 1 cut(s) | 14 |
| MspI | CCGG | 3 cut(s) | 1199, 1642, 2051 |
| MspR9I | CCNGG | 3 cut(s) | 190, 2069, 2168 |
| MunI | CAATTG | 2 cut(s) | 314, 915 |
| Mva1269I | GAATGC | 1 cut(s) | 2046 |
| MvaI | CCWGG | 3 cut(s) | 190, 2069, 2168 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 651, 805, 977, 1115, 1124, 1390, 1491, 1964, 2239 |
| NarI | GGCGCC | 1 cut(s) | 643 |
| NdeI | CATATG | 1 cut(s) | 774 |
| NdeII | GATC | 9 cut(s) | 88, 616, 840, 880, 1023, 1730, 1926, 2055, 2182 |
| NlaIII | CATG | 7 cut(s) | 89, 725, 835, 1087, 1694, 1865, 2000 |
| NlaIV | GGNNCC | 3 cut(s) | 644, 1098, 1912 |
| NmuCI | GTSAC | 2 cut(s) | 1716, 2198 |
| OliI | CACNNNNGTG | 1 cut(s) | 1631 |
| PagI | TCATGA | 2 cut(s) | 85, 1083 |
| PceI | AGGCCT | 1 cut(s) | 108 |
| PciSI | GCTCTTC | 1 cut(s) | 1383 |
| PctI | GAATGC | 1 cut(s) | 2046 |
| PdmI | GAANNNNTTC | 2 cut(s) | 81, 1140 |
| PfeI | GAWTC | 7 cut(s) | 227, 427, 1136, 1354, 1699, 2072, 2159 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1159, 1876, 1936 |
| PfoI | TCCNGGA | 1 cut(s) | 2067 |
| PkrI | GCNGC | 4 cut(s) | 1056, 1474, 1477, 1756 |
| PleI | GAGTC | 1 cut(s) | 2195 |
| PluTI | GGCGCC | 1 cut(s) | 646 |
| PpsI | GAGTC | 1 cut(s) | 2195 |
| PshBI | ATTAAT | 1 cut(s) | 405 |
| Psp124BI | GAGCTC | 1 cut(s) | 876 |
| Psp6I | CCWGG | 3 cut(s) | 188, 2067, 2166 |
| PspFI | CCCAGC | 3 cut(s) | 725, 2190, 2238 |
| PspGI | CCWGG | 3 cut(s) | 188, 2067, 2166 |
| PspN4I | GGNNCC | 3 cut(s) | 644, 1098, 1912 |
| PspPI | GGNCC | 1 cut(s) | 2236 |
| PstI | CTGCAG | 3 cut(s) | 1056, 1480, 1843 |
| PstNI | CAGNNNCTG | 2 cut(s) | 785, 2222 |
| PsuI | RGATCY | 2 cut(s) | 616, 840 |
| PvuII | CAGCTG | 1 cut(s) | 1675 |
| RsaI | GTAC | 4 cut(s) | 187, 217, 573, 812 |
| RsaNI | GTAC | 4 cut(s) | 186, 216, 572, 811 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1631, 1816 |
| SacI | GAGCTC | 1 cut(s) | 876 |
| SapI | GCTCTTC | 1 cut(s) | 1383 |
| SatI | GCNGC | 4 cut(s) | 1055, 1473, 1476, 1755 |
| Sau3AI | GATC | 9 cut(s) | 88, 616, 840, 880, 1023, 1730, 1926, 2055, 2182 |
| Sau96I | GGNCC | 1 cut(s) | 2236 |
| ScaI | AGTACT | 1 cut(s) | 217 |
| SchI | GAGTC | 1 cut(s) | 2195 |
| ScrFI | CCNGG | 3 cut(s) | 190, 2069, 2168 |
| SduI | GDGCHC | 6 cut(s) | 117, 876, 1083, 1974, 1981, 2178 |
| SexAI | ACCWGGT | 1 cut(s) | 188 |
| SfaNI | GCATC | 8 cut(s) | 694, 902, 1052, 1112, 1161, 1265, 1632, 1834 |
| SfcI | CTRYAG | 3 cut(s) | 1052, 1476, 1839 |
| SfoI | GGCGCC | 1 cut(s) | 644 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1631, 1816 |
| SmlI | CTYRAG | 3 cut(s) | 14, 862, 2091 |
| SmoI | CTYRAG | 3 cut(s) | 14, 862, 2091 |
| SpeI | ACTAGT | 2 cut(s) | 218, 802 |
| SseBI | AGGCCT | 1 cut(s) | 108 |
| SsiI | CCGC | 2 cut(s) | 1907, 2016 |
| SspDI | GGCGCC | 1 cut(s) | 642 |
| SspI | AATATT | 2 cut(s) | 1438, 1935 |
| SstI | GAGCTC | 1 cut(s) | 876 |
| StuI | AGGCCT | 1 cut(s) | 108 |
| StyD4I | CCNGG | 3 cut(s) | 188, 2067, 2166 |
| StyI | CCWWGG | 2 cut(s) | 24, 898 |
| TaaI | ACNGT | 3 cut(s) | 1289, 1463, 2106 |
| TaqI | TCGA | 2 cut(s) | 954, 1805 |
| TatI | WGTACW | 1 cut(s) | 215 |
| TfiI | GAWTC | 7 cut(s) | 227, 427, 1136, 1354, 1699, 2072, 2159 |
| TscAI | CASTG | 8 cut(s) | 400, 883, 1351, 1468, 1513, 1732, 1877, 2109 |
| TseFI | GTSAC | 2 cut(s) | 1716, 2198 |
| TseI | GCWGC | 4 cut(s) | 1054, 1472, 1475, 1754 |
| Tsp45I | GTSAC | 2 cut(s) | 1716, 2198 |
| TspRI | CASTG | 8 cut(s) | 400, 883, 1351, 1468, 1513, 1732, 1877, 2109 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1159, 1876, 1936 |
| Vha464I | CTTAAG | 1 cut(s) | 14 |
| VspI | ATTAAT | 1 cut(s) | 405 |
| XapI | RAATTY | 3 cut(s) | 1587, 1783, 2004 |
| XbaI | TCTAGA | 2 cut(s) | 127, 1250 |
| XmnI | GAANNNNTTC | 2 cut(s) | 81, 1140 |
| ZrmI | AGTACT | 1 cut(s) | 217 |