FvH4_7g04490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017356
Physical Location & Seq
Forward (+)
5034453 .. 5036439
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04490.t1

Sequence Viewer

Length: 1242 bp
ATGTCTTGTTCACATTGCCATGAGGTCGGCGGGTCCTCACCACCCGCAGTTGAGTATGTTTCGAAATCCGAACTGGGGGAGGAACAAGCAGAGTGGAACGACCAAGACAGAAGCTTATATTTGTGCGTGGCCGACTACTATGGCCGCAGATGCAAGGTGCGGTATTCTGTTTATCGTATCAATTTGAAAGCCCTCTTGTTTAGTAAGGATTTAAAATTAGGAACTGCTTTCGCAATTTCGAATAATGATAATTTGGGGGCTTGTGCTGGTTTTGGTATGGGATTTTCTACGTTATTGCTGGCTGGGGGATTTGGAGCCAAGTACTGCAAAGAATTGGTTGTAGCAGAGCCGTGTAGAGATATTTGGGACATCCAGACTAGAGCTAGAAATAACATTTTTCAAGCAAATTTGGCCCCTTTCTTAGACGGGAAAGTGAGGCCGCTTATTTGGAACGTTGATGGAAATTTGTTCGCTCTCGCTCGTAACCCGCCTCCTCCAATTTGCGCCGGTTCCAAAGGTGAATGGACAAACTGTTTTGAAATGTGTCAGTCTGCTGACAGTCAGTGGGTTCGTTTGCCGGACCCTCCTTCTTATGCATACCCTATTGGTGCTGGTGCTGGTGTTGATGGGTCTTGGGGTGGCGGTGCTGGTGATGAGGAGATGGGTGTTGTTGATGAGTCTGTCAGAAGGCTCATTTACTATTCAAGATTCTCTTTTGCAATTTTGGGTAGTCAACTTTTTGTGTCTAATCCAGAGCATCCTGAATATTCATACAAGTGCAACCTTTCCAGAGTTAATGAAAACTGGCCAGTTGAGTGGAAAGTTTCACGTTTCCGATTTGAGGGTGCAACTCTAGGGGTTCAGACAGCACAAGGGTTTGTAGTCTTTTCCCATGATGTCATTCCACCTGATTCACGTGAGATCAAAGTACACCTGTTGATAAACGGCTCTGATGAACCGATGATGCCTTCTCAATCGCTAATGTTGCCACCACAAGATCTTGATGTTGTTCAGGATTCTCAATTTGTTGACCTAGGAGGTCAGAAAGTCTGCTTTCTCTATTCTAAAACCAAAACATCAAAGTTGCTTGTAACCGCCATCACATTTAGCTTCCGACTCGAAGAGGGAAACAAATTCAGAGCCAAATTTTATCCTACCCGCAACTGGGAATTCCAAGATAAGGCTGAGTCGGAGGCCCTTCTTTGGAATATGGAACAGATGGTTGGTGCTGTTGTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

46.02

Weight (kDa)

5.35

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017356)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04490
rosa_chinensis RchiOBHm_Chr5g0043831
rosa_laevigata RLG00000034216
rosa_multiflora Rmu_co8126332.1_g000001 Rmu_sc0002448.1_g000002 Rmu_sc0006691.1_g000009 Rmu_sc0008441.1_g000016
rosa_roxburghii Rroxscaffold_1G00037220
rosa_rugosa Rorug05G0208500
rosa_samantha Rh5AG292600 Rh5BG300500 Rh5DG309500
rosa_wichuraiana Rw5G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 30, 45, 145, 160, 440, 488, 642, 1095, 1159
AclI AACGTT 1 cut(s) 453
AcoI YGGCCR 3 cut(s) 129, 142, 806
AcsI RAATTY 5 cut(s) 406, 463, 1133, 1145, 1169
AcvI CACGTG 1 cut(s) 917
AfaI GTAC 2 cut(s) 323, 930
AfiI CCNNNNNNNGG 6 cut(s) 75, 841, 1164, 1165, 1180, 1203
AgsI TTSAA 4 cut(s) 187, 401, 539, 705
AjuI GAANNNNNNNTTGG 2 cut(s) 1206, 1238
AluBI AGCT 3 cut(s) 114, 383, 1110
AluI AGCT 3 cut(s) 114, 383, 1110
AoxI GGCC 6 cut(s) 129, 142, 411, 437, 806, 1194
ApoI RAATTY 5 cut(s) 406, 463, 1133, 1145, 1169
AspA2I CCTAGG 1 cut(s) 1033
AspLEI GCGC 1 cut(s) 506
AspS9I GGNCC 4 cut(s) 33, 412, 580, 1195
AsuHPI GGTGA 3 cut(s) 30, 530, 662
AsuII TTCGAA 2 cut(s) 62, 239
AvaII GGWCC 2 cut(s) 33, 580
AvrII CCTAGG 1 cut(s) 1033
BalI TGGCCA 1 cut(s) 808
BbrPI CACGTG 1 cut(s) 917
BccI CCATC 5 cut(s) 452, 620, 655, 1106, 1213
BceAI ACGGC 2 cut(s) 334, 961
BfaI CTAG 4 cut(s) 378, 384, 854, 1034
BglII AGATCT 1 cut(s) 997
BisI GCNGC 2 cut(s) 145, 440
BlnI CCTAGG 1 cut(s) 1033
BlsI GCNGC 2 cut(s) 146, 441
BmcAI AGTACT 1 cut(s) 323
Bme18I GGWCC 2 cut(s) 33, 580
BmgT120I GGNCC 4 cut(s) 33, 412, 580, 1195
BmiI GGNNCC 5 cut(s) 34, 316, 414, 511, 582
BmrI ACTGGG 2 cut(s) 83, 1174
BmsI GCATC 3 cut(s) 140, 766, 954
BmuI ACTGGG 2 cut(s) 83, 1174
Bpu14I TTCGAA 2 cut(s) 62, 239
BsaAI YACGTR 1 cut(s) 917
BsaJI CCNNGG 1 cut(s) 1033
Bsc4I CCNNNNNNNGG 6 cut(s) 75, 841, 1164, 1165, 1180, 1203
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 4 cut(s) 78, 809, 809, 1169
Bse3DI GCAATG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 1033
BseGI GGATG 2 cut(s) 369, 757
BseLI CCNNNNNNNGG 6 cut(s) 75, 841, 1164, 1165, 1180, 1203
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 1176
BseNI ACTGG 4 cut(s) 78, 809, 809, 1169
BseRI GAGGAG 2 cut(s) 483, 671
BseYI CCCAGC 1 cut(s) 302
BshFI GGCC 6 cut(s) 131, 144, 413, 439, 808, 1196
BsiSI CCGG 2 cut(s) 507, 578
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 6 cut(s) 75, 841, 1164, 1165, 1180, 1203
BsmFI GGGAC 1 cut(s) 380
BsnI GGCC 6 cut(s) 131, 144, 413, 439, 808, 1196
Bsp119I TTCGAA 2 cut(s) 62, 239
Bsp143I GATC 2 cut(s) 921, 997
BspACI CCGC 9 cut(s) 30, 45, 145, 160, 440, 488, 642, 1095, 1159
BspANI GGCC 6 cut(s) 131, 144, 413, 439, 808, 1196
BspCNI CTCAG 1 cut(s) 1177
BspLI GGNNCC 5 cut(s) 34, 316, 414, 511, 582
BspT104I TTCGAA 2 cut(s) 62, 239
BsrDI GCAATG 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 4 cut(s) 78, 809, 809, 1169
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 1033
BssMI GATC 2 cut(s) 921, 997
BssT1I CCWWGG 1 cut(s) 1033
Bst4CI ACNGT 2 cut(s) 533, 560
Bst6I CTCTTC 1 cut(s) 1116
BstBAI YACGTR 1 cut(s) 917
BstBI TTCGAA 2 cut(s) 62, 239
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 421, 1185
BstF5I GGATG 2 cut(s) 369, 757
BstHHI GCGC 1 cut(s) 506
BstKTI GATC 2 cut(s) 924, 1000
BstMBI GATC 2 cut(s) 921, 997
BstMWI GCNNNNNNNGC 3 cut(s) 150, 410, 985
BstX2I RGATCY 1 cut(s) 997
BstXI CCANNNNNNTGG 1 cut(s) 816
BstYI RGATCY 1 cut(s) 997
BsuRI GGCC 6 cut(s) 131, 144, 413, 439, 808, 1196
BtsCI GGATG 2 cut(s) 369, 757
BtsIMutI CAGTG 1 cut(s) 569
Cac8I GCNNGC 1 cut(s) 300
CfoI GCGC 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 4 cut(s) 33, 412, 580, 1195
Csp6I GTAC 2 cut(s) 322, 929
CspCI CAANNNNNGTGG 2 cut(s) 74, 109
CviAII CATG 2 cut(s) 20, 893
CviQI GTAC 2 cut(s) 322, 929
DdeI CTNAG 2 cut(s) 421, 1185
DpnI GATC 2 cut(s) 923, 999
DpnII GATC 2 cut(s) 921, 997
DraI TTTAAA 1 cut(s) 213
EaeI YGGCCR 3 cut(s) 129, 142, 806
Eam1104I CTCTTC 1 cut(s) 1116
EarI CTCTTC 1 cut(s) 1116
Eco130I CCWWGG 1 cut(s) 1033
Eco47I GGWCC 2 cut(s) 33, 580
Eco72I CACGTG 1 cut(s) 917
EcoO109I RGGNCCY 2 cut(s) 33, 1195
EcoRI GAATTC 1 cut(s) 1169
EcoT14I CCWWGG 1 cut(s) 1033
EcoT22I ATGCAT 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 1033
FaeI CATG 2 cut(s) 23, 896
FalI AAGNNNNNCTT 2 cut(s) 697, 729
FaqI GGGAC 1 cut(s) 380
FatI CATG 2 cut(s) 19, 892
FauI CCCGC 4 cut(s) 23, 52, 495, 1166
Fnu4HI GCNGC 2 cut(s) 145, 440
FokI GGATG 2 cut(s) 356, 744
Fsp4HI GCNGC 2 cut(s) 145, 440
FspBI CTAG 4 cut(s) 378, 384, 854, 1034
GlaI GCGC 1 cut(s) 505
GluI GCNGC 2 cut(s) 145, 440
GsaI CCCAGC 1 cut(s) 306
HaeIII GGCC 6 cut(s) 131, 144, 413, 439, 808, 1196
HapII CCGG 2 cut(s) 507, 578
HhaI GCGC 1 cut(s) 506
Hin1II CATG 2 cut(s) 23, 896
Hin6I GCGC 1 cut(s) 504
HinP1I GCGC 1 cut(s) 504
HincII GTYRAC 2 cut(s) 734, 1030
HindII GTYRAC 2 cut(s) 734, 1030
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 6 cut(s) 677, 708, 911, 1016, 1116, 1187
HpaII CCGG 2 cut(s) 507, 578
HphI GGTGA 3 cut(s) 30, 530, 662
Hpy166II GTNNAC 4 cut(s) 11, 734, 931, 1030
Hpy188I TCNGA 9 cut(s) 70, 686, 836, 864, 952, 1044, 1115, 1139, 1192
Hpy188III TCNNGA 7 cut(s) 373, 705, 752, 761, 789, 1001, 1013
Hpy8I GTNNAC 4 cut(s) 11, 734, 931, 1030
HpyAV CCTTC 4 cut(s) 597, 681, 978, 1208
HpyCH4III ACNGT 2 cut(s) 533, 560
HpyCH4IV ACGT 4 cut(s) 290, 453, 829, 916
HpyCH4V TGCA 6 cut(s) 153, 327, 596, 719, 780, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 410, 985
HpyF3I CTNAG 2 cut(s) 421, 1185
HpySE526I ACGT 4 cut(s) 290, 453, 829, 916
Hsp92II CATG 2 cut(s) 23, 896
HspAI GCGC 1 cut(s) 504
Kzo9I GATC 2 cut(s) 921, 997
LmnI GCTCC 1 cut(s) 314
LweI GCATC 3 cut(s) 140, 766, 954
MaeI CTAG 4 cut(s) 378, 384, 854, 1034
MaeII ACGT 4 cut(s) 290, 453, 829, 916
MaeIII GTNAC 2 cut(s) 482, 1090
MalI GATC 2 cut(s) 923, 999
MboI GATC 2 cut(s) 921, 997
MboII GAAGA 1 cut(s) 1133
MflI RGATCY 1 cut(s) 997
MlsI TGGCCA 1 cut(s) 808
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 3 cut(s) 686, 1110, 1196
MmeI TCCRAC 2 cut(s) 1138, 1170
Mox20I TGGCCA 1 cut(s) 808
Mph1103I ATGCAT 1 cut(s) 598
MscI TGGCCA 1 cut(s) 808
MseI TTAA 2 cut(s) 212, 795
MslI CAYNNNNRTG 2 cut(s) 18, 775
Msp20I TGGCCA 1 cut(s) 808
MspI CCGG 2 cut(s) 507, 578
MwoI GCNNNNNNNGC 3 cut(s) 150, 410, 985
NdeII GATC 2 cut(s) 921, 997
NlaIII CATG 2 cut(s) 23, 896
NlaIV GGNNCC 5 cut(s) 34, 316, 414, 511, 582
NsiI ATGCAT 1 cut(s) 598
NspV TTCGAA 2 cut(s) 62, 239
PfeI GAWTC 3 cut(s) 708, 911, 1016
PkrI GCNGC 2 cut(s) 146, 441
PleI GAGTC 3 cut(s) 685, 1110, 1195
PmaCI CACGTG 1 cut(s) 917
PmlI CACGTG 1 cut(s) 917
PpsI GAGTC 3 cut(s) 685, 1110, 1195
Ppu21I YACGTR 1 cut(s) 917
PpuMI RGGWCCY 1 cut(s) 33
Psp1406I AACGTT 1 cut(s) 453
Psp5II RGGWCCY 1 cut(s) 33
PspCI CACGTG 1 cut(s) 917
PspFI CCCAGC 1 cut(s) 302
PspN4I GGNNCC 5 cut(s) 34, 316, 414, 511, 582
PspPI GGNCC 4 cut(s) 33, 412, 580, 1195
PspPPI RGGWCCY 1 cut(s) 33
PsuI RGATCY 1 cut(s) 997
RsaI GTAC 2 cut(s) 323, 930
RsaNI GTAC 2 cut(s) 322, 929
RseI CAYNNNNRTG 2 cut(s) 18, 775
SaqAI TTAA 2 cut(s) 212, 795
SatI GCNGC 2 cut(s) 145, 440
Sau3AI GATC 2 cut(s) 921, 997
Sau96I GGNCC 4 cut(s) 33, 412, 580, 1195
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 3 cut(s) 686, 1110, 1196
SfaNI GCATC 3 cut(s) 140, 766, 954
SfuI TTCGAA 2 cut(s) 62, 239
SinI GGWCC 2 cut(s) 33, 580
SmiMI CAYNNNNRTG 2 cut(s) 18, 775
SsiI CCGC 9 cut(s) 30, 45, 145, 160, 440, 488, 642, 1095, 1159
SspI AATATT 1 cut(s) 767
SspMI CTAG 4 cut(s) 378, 384, 854, 1034
StyI CCWWGG 1 cut(s) 1033
TaaI ACNGT 2 cut(s) 533, 560
TaiI ACGT 4 cut(s) 293, 456, 832, 919
TaqI TCGA 3 cut(s) 62, 239, 1119
TatI WGTACW 2 cut(s) 321, 928
TauI GCSGC 2 cut(s) 147, 442
TfiI GAWTC 3 cut(s) 708, 911, 1016
Tru1I TTAA 2 cut(s) 212, 795
Tru9I TTAA 2 cut(s) 212, 795
TscAI CASTG 1 cut(s) 569
TspDTI ATGAA 3 cut(s) 759, 813, 969
TspRI CASTG 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 33, 580
XapI RAATTY 5 cut(s) 406, 463, 1133, 1145, 1169
XmaJI CCTAGG 1 cut(s) 1033
XspI CTAG 4 cut(s) 378, 384, 854, 1034
ZrmI AGTACT 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.