Rmu_co8126332.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8126332.1
OG0017356
Physical Location & Seq
Reverse (-)
2 .. 546
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8126332.1_g000001.1.cds

Sequence Viewer

Length: 545 bp
atgatattcttgggtggaggatttaaagccaagtactcgaaagaatttgttgtcccagagccatgtacaggtattctggcctatcgcattcgtaaaatttttgaagatggtcatttagctcatttcttagacggcaaagtgaggccgcttatatgggaggttgaaggaaatttgttcgctctcgctcgtaaccctcctcctcgaattgacaccggtatcccagctagtgaatggagaaactgttttgaaatgtatgaccgggcccagggtcgatggattggtttgccggaccctccttcttatgctgaataccctgtcgctgctgttgatgagtctggtggtggtggtattgatgaggaggaggagtttgttggttgtgatgacagcgctttgagaaggcactgttactattcaagcttctcttatgcaattttaggtagccaacttttcgtctctaatccaaactatcatgaatattcatacaagtgcaaccttcccagcaagcgtgaaaactggccagttgagtggaaagtttcaagtttcca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.62

Weight (kDa)

5.26

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017356)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04490
rosa_chinensis RchiOBHm_Chr5g0043831
rosa_laevigata RLG00000034216
rosa_multiflora Rmu_co8126332.1_g000001 Rmu_sc0002448.1_g000002 Rmu_sc0006691.1_g000009 Rmu_sc0008441.1_g000016
rosa_roxburghii Rroxscaffold_1G00037220
rosa_rugosa Rorug05G0208500
rosa_samantha Rh5AG292600 Rh5BG300500 Rh5DG309500
rosa_wichuraiana Rw5G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 3 cut(s) 44, 96, 169
AfaI GTAC 2 cut(s) 35, 67
AfeI AGCGCT 1 cut(s) 388
AfiI CCNNNNNNNGG 2 cut(s) 68, 265
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 5 cut(s) 104, 164, 248, 414, 537
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 3 cut(s) 119, 224, 417
AluI AGCT 3 cut(s) 119, 224, 417
Alw26I GTCTC 1 cut(s) 457
Aor51HI AGCGCT 1 cut(s) 388
AoxI GGCC 4 cut(s) 78, 143, 261, 515
ApaI GGGCCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 3 cut(s) 44, 96, 169
AsiGI ACCGGT 1 cut(s) 212
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 3 cut(s) 261, 262, 289
AsuC2I CCSGG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 1 cut(s) 265
BaeI ACNNNNGTAYC 2 cut(s) 199, 232
BalI TGGCCA 1 cut(s) 517
BanII GRGCYC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 101, 267
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 266
BciVI GTATCC 1 cut(s) 227
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 390
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 2 cut(s) 146, 321
BlsI GCNGC 2 cut(s) 147, 322
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 260, 266
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 3 cut(s) 261, 262, 289
BmiI GGNNCC 2 cut(s) 263, 291
BmrFI CCNGG 2 cut(s) 260, 266
BpuMI CCSGG 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 264, 265
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 350, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 265
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 518, 518
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 264, 265
BseLI CCNNNNNNNGG 2 cut(s) 68, 265
BseNI ACTGG 2 cut(s) 518, 518
BseRI GAGGAG 5 cut(s) 186, 189, 371, 374, 377
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 1 cut(s) 307
BseYI CCCAGC 2 cut(s) 220, 497
BshFI GGCC 4 cut(s) 80, 145, 263, 517
BshTI ACCGGT 1 cut(s) 212
BsiSI CCGG 3 cut(s) 213, 259, 287
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 68, 265
BsmAI GTCTC 1 cut(s) 457
BsmBI CGTCTC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 38
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 4 cut(s) 80, 145, 263, 517
Bsp120I GGGCCC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 265
Bsp1407I TGTACA 1 cut(s) 65
BspACI CCGC 1 cut(s) 146
BspANI GGCC 4 cut(s) 80, 145, 263, 517
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 263, 291
BsrFI RCCGGY 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 65
BsrI ACTGG 2 cut(s) 518, 518
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 264, 265
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 2 cut(s) 242, 404
BstAUI TGTACA 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 1 cut(s) 127
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 1 cut(s) 389
BstMAI GTCTC 1 cut(s) 457
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 258, 264
BstSLI GKGCMC 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 4 cut(s) 80, 145, 263, 517
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 503
CciI TCATGA 1 cut(s) 469
CfoI GCGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 261, 262, 289
Csp6I GTAC 2 cut(s) 34, 66
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 2 cut(s) 63, 470
CviQI GTAC 2 cut(s) 34, 66
DdeI CTNAG 1 cut(s) 127
DraI TTTAAA 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 515
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 289
Eco47III AGCGCT 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 265
Esp3I CGTCTC 1 cut(s) 457
FaeI CATG 2 cut(s) 66, 473
FaiI YATR 8 cut(s) 64, 152, 154, 255, 303, 426, 471, 481
FalI AAGNNNNNCTT 2 cut(s) 406, 438
FaqI GGGAC 1 cut(s) 38
FatI CATG 2 cut(s) 62, 469
Fnu4HI GCNGC 2 cut(s) 146, 321
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 146, 321
FspBI CTAG 1 cut(s) 225
GlaI GCGC 1 cut(s) 388
GluI GCNGC 2 cut(s) 146, 321
GsaI CCCAGC 2 cut(s) 224, 501
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 4 cut(s) 80, 145, 263, 517
HapII CCGG 3 cut(s) 213, 259, 287
HhaI GCGC 1 cut(s) 389
Hin1II CATG 2 cut(s) 66, 473
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 1 cut(s) 332
HpaII CCGG 3 cut(s) 213, 259, 287
Hpy188III TCNNGA 1 cut(s) 470
HpyAV CCTTC 4 cut(s) 158, 306, 390, 503
HpyCH4III ACNGT 2 cut(s) 242, 404
HpyCH4V TGCA 2 cut(s) 428, 489
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 2 cut(s) 66, 473
HspAI GCGC 1 cut(s) 387
Lsp1109I GCAGC 1 cut(s) 307
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 188, 404
MboII GAAGA 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 5 cut(s) 44, 96, 169, 204, 429
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 1 cut(s) 341
Mox20I TGGCCA 1 cut(s) 517
MscI TGGCCA 1 cut(s) 517
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 484
Msp20I TGGCCA 1 cut(s) 517
MspI CCGG 3 cut(s) 213, 259, 287
MspR9I CCNGG 2 cut(s) 260, 266
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 266
NciI CCSGG 1 cut(s) 260
NlaIII CATG 2 cut(s) 66, 473
NlaIV GGNNCC 2 cut(s) 263, 291
PagI TCATGA 1 cut(s) 469
PasI CCCWGGG 1 cut(s) 265
PctI GAATGC 1 cut(s) 87
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 2 cut(s) 147, 322
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 264
PspFI CCCAGC 2 cut(s) 220, 497
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 263, 291
PspOMI GGGCCC 1 cut(s) 261
PspPI GGNCC 3 cut(s) 261, 262, 289
RsaI GTAC 2 cut(s) 35, 67
RsaNI GTAC 2 cut(s) 34, 66
RseI CAYNNNNRTG 1 cut(s) 484
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 2 cut(s) 146, 321
Sau96I GGNCC 3 cut(s) 261, 262, 289
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 260, 266
SduI GDGCHC 1 cut(s) 265
SetI ASST 7 cut(s) 73, 121, 162, 226, 419, 439, 495
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 484
Sse9I AATT 5 cut(s) 44, 96, 169, 204, 429
SsiI CCGC 1 cut(s) 146
SspI AATATT 1 cut(s) 476
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 258, 264
TaaI ACNGT 2 cut(s) 242, 404
TaqI TCGA 3 cut(s) 38, 202, 271
TasI AATT 5 cut(s) 44, 96, 169, 204, 429
TatI WGTACW 2 cut(s) 33, 65
TauI GCSGC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 407
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 468, 486
TspRI CASTG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 3 cut(s) 44, 96, 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
XspI CTAG 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.