RLG00000034216

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017356
Physical Location & Seq
Forward (+)
38647188 .. 38648618
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034216

Sequence Viewer

Length: 1287 bp
ATGTATTCTGAAGATTACCCTGAGGCCGTCGGGTCCTCAACACCCGCAGTAGAGTTTCTGTCGGAATTAGAACTGTGGGAGGAGCAAGCAAACTGGGATGACCAAGACAAAAGCTTATATTTGTGCGTGGGCGACTACTATGGGAGAAGAGGCAAGGTACTCTATGTTGTTTATCGTATCAATTTGAAAGCCCTCTTGTTTAGTGAGGATCTAGAGTTTGAAACCGTGTTCGAAGTTCCCGATAATGATAATATTGGGAATTGTGCCGGATTTGGTATGGGACTTTCTATGATATTCTTGGGTGGAGGATTTAGAGCCAAGTACTCGAAAGAATTTGTTGTCCCAGAGCCATGTACAGGTATTCTGGCCTATCACATTCGTAAAAATTTTGAAGGTGGTCCTTTAGCTCATTTCTTAGACGGCAAAGTGAGGCCACTTATATGGGAGGTTGGAGGAAATTTGTTCGCTCTTGCTCGTAACCCGCCTCCTGGAATTGACACCGGTTTCCCAGCTAGTGAATGGAGAAACTGTTTTGAAATGTATAACCGCGCCCAGAGGCGATGGGTTGGTTTGCCGGACCCTCCTTCTTATGCTGAATACCCTGTCGCTGCTGTTGATGAGTCTGGTGGTGGTGGTATTGATGAGTGTGGTGATGAGGAGGAGGAGTTAGTTGGTTGTGATGACGGCGCTTTGAGAAGGCACTGTTACTATTCAAGCTTCTCTTATGCAATTTTAGGTAGCCAACTTTTCGTGTCTAATCCACACTATCATGAATATTCATACAAGTGCAACCTTCCCTGCAAGCGTGAAAACTGGCCAGTTGAGTGGAAAGTTTCAAGTTTCCAATTTCAGGGTGTAACTCTAGGGGTTCAAACGGCACAAGGGTTTGTAGTCTTTTCCTATGATGTCAATTTCCATCCACCTGAATATGTAGTTAAACTTGAAGATAATCCCTACTTAAATATCACAGTGCAACTGTTGATAAATGGCTATGATGAACCGGTGCTTTGTCAATCTCTAATGATGCCGCAAGAGCTGGATGAAGTTCAAGACTCCCAGTTTGTTCACCTAGGAGGTCAAAACGTCTGCTTTCTCTATTCTAGAATGAGAGATTCCAAGTTGCTTGTAACCGCCATCACATTTGGCTTCCAACTCGAACAGAGAAATAGCGGCTTCAAAGTCAAAGCCAAATTTTATCCTACTCGCAACTGGGAATTCCAAAATAAGGCTGGGTCTAAGGCTAAAGTTTGGGGTACGGAACAGATGGTTGGTGCTGTTGTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

48.44

Weight (kDa)

4.79

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017356)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04490
rosa_chinensis RchiOBHm_Chr5g0043831
rosa_laevigata RLG00000034216
rosa_multiflora Rmu_co8126332.1_g000001 Rmu_sc0002448.1_g000002 Rmu_sc0006691.1_g000009 Rmu_sc0008441.1_g000016
rosa_roxburghii Rroxscaffold_1G00037220
rosa_rugosa Rorug05G0208500
rosa_samantha Rh5AG292600 Rh5BG300500 Rh5DG309500
rosa_wichuraiana Rw5G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 549
AciI CCGC 6 cut(s) 45, 482, 547, 1028, 1131, 1170
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 815
AcsI RAATTY 5 cut(s) 332, 385, 457, 1190, 1214
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 4 cut(s) 159, 323, 355, 1255
AfiI CCNNNNNNNGG 4 cut(s) 356, 488, 850, 1225
AgeI ACCGGT 2 cut(s) 500, 1000
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 1251, 1283
AluBI AGCT 5 cut(s) 114, 407, 512, 717, 1036
AluI AGCT 5 cut(s) 114, 407, 512, 717, 1036
AlwI GGATC 1 cut(s) 216
AoxI GGCC 4 cut(s) 24, 366, 431, 815
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 5 cut(s) 332, 385, 457, 1190, 1214
ArsI GACNNNNNNTTYG 2 cut(s) 1043, 1075
AsiGI ACCGGT 2 cut(s) 500, 1000
AspA2I CCTAGG 1 cut(s) 1069
AspLEI GCGC 2 cut(s) 551, 689
AspS9I GGNCC 3 cut(s) 33, 398, 577
AsuHPI GGTGA 2 cut(s) 662, 1058
AsuII TTCGAA 1 cut(s) 231
AvaII GGWCC 3 cut(s) 33, 398, 577
AvrII CCTAGG 1 cut(s) 1069
AxyI CCTNAGG 1 cut(s) 21
BalI TGGCCA 1 cut(s) 817
BbvI GCAGC 1 cut(s) 595
BccI CCATC 4 cut(s) 555, 924, 1142, 1258
BceAI ACGGC 4 cut(s) 11, 436, 700, 891
BciT130I CCWGG 1 cut(s) 489
BfaI CTAG 5 cut(s) 212, 513, 863, 1070, 1101
BfoI RGCGCY 1 cut(s) 690
BisI GCNGC 3 cut(s) 609, 1028, 1171
BlnI CCTAGG 1 cut(s) 1069
BlsI GCNGC 3 cut(s) 610, 1029, 1172
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 1 cut(s) 489
Bme18I GGWCC 3 cut(s) 33, 398, 577
BmgT120I GGNCC 3 cut(s) 33, 398, 577
BmiI GGNNCC 2 cut(s) 34, 579
BmrFI CCNGG 1 cut(s) 489
BmrI ACTGGG 3 cut(s) 103, 1051, 1219
BmsI GCATC 1 cut(s) 1014
BmuI ACTGGG 3 cut(s) 103, 1051, 1219
Bpu14I TTCGAA 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 1069
BsaWI WCCGGW 2 cut(s) 500, 1000
BsaXI ACNNNNNCTCC 4 cut(s) 514, 544, 650, 680
Bsc4I CCNNNNNNNGG 4 cut(s) 356, 488, 850, 1225
Bse118I RCCGGY 2 cut(s) 500, 1000
Bse1I ACTGG 5 cut(s) 98, 818, 818, 1057, 1214
Bse21I CCTNAGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 1069
BseGI GGATG 3 cut(s) 103, 916, 1045
BseLI CCNNNNNNNGG 4 cut(s) 356, 488, 850, 1225
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 5 cut(s) 98, 818, 818, 1057, 1214
BseRI GAGGAG 4 cut(s) 95, 671, 674, 677
BseXI GCAGC 1 cut(s) 595
BseYI CCCAGC 2 cut(s) 508, 1229
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 4 cut(s) 26, 368, 433, 817
BshTI ACCGGT 2 cut(s) 500, 1000
BsiSI CCGG 4 cut(s) 267, 501, 575, 1001
BslFI GGGAC 2 cut(s) 294, 326
BslI CCNNNNNNNGG 4 cut(s) 356, 488, 850, 1225
BsmFI GGGAC 2 cut(s) 294, 326
BsnI GGCC 4 cut(s) 26, 368, 433, 817
Bsp119I TTCGAA 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 353
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 6 cut(s) 45, 482, 547, 1028, 1131, 1170
BspANI GGCC 4 cut(s) 26, 368, 433, 817
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 1 cut(s) 549
BspHI TCATGA 1 cut(s) 769
BspLI GGNNCC 2 cut(s) 34, 579
BspPI GGATC 1 cut(s) 216
BspT104I TTCGAA 1 cut(s) 231
BsrFI RCCGGY 2 cut(s) 500, 1000
BsrGI TGTACA 1 cut(s) 353
BsrI ACTGG 5 cut(s) 98, 818, 818, 1057, 1214
BssAI RCCGGY 2 cut(s) 500, 1000
BssECI CCNNGG 1 cut(s) 1069
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 1069
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 6 cut(s) 75, 226, 530, 704, 970, 978
Bst6I CTCTTC 1 cut(s) 142
BstAUI TGTACA 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 87, 803
BstDEI CTNAG 3 cut(s) 21, 415, 1236
BstF5I GGATG 3 cut(s) 103, 916, 1045
BstFNI CGCG 1 cut(s) 549
BstH2I RGCGCY 1 cut(s) 690
BstHHI GCGC 2 cut(s) 551, 689
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 1033
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 1 cut(s) 595
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 2 cut(s) 441, 825
BstYI RGATCY 1 cut(s) 208
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 4 cut(s) 26, 368, 433, 817
BtgZI GCGATG 1 cut(s) 574
BtsCI GGATG 3 cut(s) 103, 916, 1045
BtsIMutI CAGTG 2 cut(s) 700, 975
Cac8I GCNNGC 2 cut(s) 87, 803
CciI TCATGA 1 cut(s) 769
CfoI GCGC 2 cut(s) 551, 689
Cfr10I RCCGGY 2 cut(s) 500, 1000
Cfr13I GGNCC 3 cut(s) 33, 398, 577
Csp6I GTAC 4 cut(s) 158, 322, 354, 1254
CspAI ACCGGT 2 cut(s) 500, 1000
CviAII CATG 2 cut(s) 351, 770
CviQI GTAC 4 cut(s) 158, 322, 354, 1254
DdeI CTNAG 3 cut(s) 21, 415, 1236
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 815
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 1069
Eco47I GGWCC 3 cut(s) 33, 398, 577
Eco57I CTGAAG 1 cut(s) 30
Eco81I CCTNAGG 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 1214
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 1069
ErhI CCWWGG 1 cut(s) 1069
FaeI CATG 2 cut(s) 354, 773
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FaqI GGGAC 2 cut(s) 294, 326
FatI CATG 2 cut(s) 350, 769
FauI CCCGC 2 cut(s) 52, 489
Fnu4HI GCNGC 3 cut(s) 609, 1028, 1171
FokI GGATG 3 cut(s) 110, 903, 1052
Fsp4HI GCNGC 3 cut(s) 609, 1028, 1171
FspBI CTAG 5 cut(s) 212, 513, 863, 1070, 1101
GlaI GCGC 2 cut(s) 550, 688
GluI GCNGC 3 cut(s) 609, 1028, 1171
GsaI CCCAGC 2 cut(s) 512, 1233
HaeII RGCGCY 1 cut(s) 690
HaeIII GGCC 4 cut(s) 26, 368, 433, 817
HapII CCGG 4 cut(s) 267, 501, 575, 1001
HhaI GCGC 2 cut(s) 551, 689
Hin1II CATG 2 cut(s) 354, 773
Hin6I GCGC 2 cut(s) 549, 687
HinP1I GCGC 2 cut(s) 549, 687
HindIII AAGCTT 2 cut(s) 112, 715
HinfI GANTC 3 cut(s) 620, 1052, 1112
HpaII CCGG 4 cut(s) 267, 501, 575, 1001
HphI GGTGA 2 cut(s) 662, 1058
Hpy166II GTNNAC 1 cut(s) 1066
Hpy188I TCNGA 2 cut(s) 10, 64
Hpy188III TCNNGA 5 cut(s) 212, 239, 770, 1049, 1101
Hpy8I GTNNAC 1 cut(s) 1066
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 386, 594, 690, 803
HpyCH4III ACNGT 6 cut(s) 75, 226, 530, 704, 970, 978
HpyCH4IV ACGT 1 cut(s) 1083
HpyCH4V TGCA 4 cut(s) 728, 789, 801, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 1033
HpyF3I CTNAG 3 cut(s) 21, 415, 1236
HpySE526I ACGT 1 cut(s) 1083
Hsp92II CATG 2 cut(s) 354, 773
HspAI GCGC 2 cut(s) 549, 687
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 1 cut(s) 1014
MaeI CTAG 5 cut(s) 212, 513, 863, 1070, 1101
MaeII ACGT 1 cut(s) 1083
MaeIII GTNAC 4 cut(s) 476, 704, 856, 1126
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 3 cut(s) 23, 159, 956
MflI RGATCY 1 cut(s) 208
MlsI TGGCCA 1 cut(s) 817
MluNI TGGCCA 1 cut(s) 817
MlyI GAGTC 2 cut(s) 629, 1046
MmeI TCCRAC 3 cut(s) 42, 430, 1174
Mox20I TGGCCA 1 cut(s) 817
MscI TGGCCA 1 cut(s) 817
MseI TTAA 2 cut(s) 936, 959
MslI CAYNNNNRTG 3 cut(s) 439, 768, 784
Msp20I TGGCCA 1 cut(s) 817
MspI CCGG 4 cut(s) 267, 501, 575, 1001
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 1 cut(s) 1033
NdeII GATC 1 cut(s) 208
NlaIII CATG 2 cut(s) 354, 773
NlaIV GGNNCC 2 cut(s) 34, 579
NspV TTCGAA 1 cut(s) 231
PagI TCATGA 1 cut(s) 769
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 1 cut(s) 1112
PfoI TCCNGGA 1 cut(s) 487
PinAI ACCGGT 2 cut(s) 500, 1000
PkrI GCNGC 3 cut(s) 610, 1029, 1172
PleI GAGTC 2 cut(s) 628, 1046
PpsI GAGTC 2 cut(s) 628, 1046
PpuMI RGGWCCY 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 487
PspFI CCCAGC 2 cut(s) 508, 1229
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 2 cut(s) 34, 579
PspPI GGNCC 3 cut(s) 33, 398, 577
PspPPI RGGWCCY 1 cut(s) 33
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 4 cut(s) 159, 323, 355, 1255
RsaNI GTAC 4 cut(s) 158, 322, 354, 1254
RseI CAYNNNNRTG 3 cut(s) 439, 768, 784
SaqAI TTAA 2 cut(s) 936, 959
SatI GCNGC 3 cut(s) 609, 1028, 1171
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 3 cut(s) 33, 398, 577
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 2 cut(s) 629, 1046
ScrFI CCNGG 1 cut(s) 489
SfaNI GCATC 1 cut(s) 1014
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 3 cut(s) 33, 398, 577
SmiMI CAYNNNNRTG 3 cut(s) 439, 768, 784
SsiI CCGC 6 cut(s) 45, 482, 547, 1028, 1131, 1170
SspI AATATT 2 cut(s) 253, 776
SspMI CTAG 5 cut(s) 212, 513, 863, 1070, 1101
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 1 cut(s) 1069
TaaI ACNGT 6 cut(s) 75, 226, 530, 704, 970, 978
TaiI ACGT 1 cut(s) 1086
TaqI TCGA 3 cut(s) 231, 326, 1155
TatI WGTACW 2 cut(s) 321, 353
TauI GCSGC 2 cut(s) 1030, 1173
TfiI GAWTC 1 cut(s) 1112
Tru1I TTAA 2 cut(s) 936, 959
Tru9I TTAA 2 cut(s) 936, 959
TscAI CASTG 2 cut(s) 707, 975
TseI GCWGC 1 cut(s) 608
TspDTI ATGAA 4 cut(s) 768, 786, 1011, 1056
TspGWI ACGGA 1 cut(s) 1271
TspRI CASTG 2 cut(s) 707, 975
VpaK11BI GGWCC 3 cut(s) 33, 398, 577
XapI RAATTY 5 cut(s) 332, 385, 457, 1190, 1214
XbaI TCTAGA 2 cut(s) 211, 1100
XcmI CCANNNNNNNNNTGG 2 cut(s) 516, 1226
XmaJI CCTAGG 1 cut(s) 1069
XspI CTAG 5 cut(s) 212, 513, 863, 1070, 1101
ZrmI AGTACT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.