RchiOBHm_Chr5g0043831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0017356
Physical Location & Seq
Forward (+)
38898628 .. 38900448
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32206

Sequence Viewer

Length: 1209 bp
ATGTATTCTGAAGATTACCCTGAGGCCGTCGGGTCCTCAACACCCGCAGTAGAGTTTCTGTCGGAATCAGTACTGTGGGAGGAGCAAGCAAACTGGGATGACCAAGACAAAAACTTATATTTGTGCGTGGGCGACTACTATGGGAGAAGAGGCAAGGTACTGTATGTTGTTTATCGTATCAATTTGAAAGCCCTCTTGTTTAGTGAGGATCTAGAGTTTGAAACCGTGTTCGAAGTTCCCGATAATGATAATATTGGGAATTGTGCCGGATTTGGTATGGGACTTTCTATGATATTCTTGGGTGGAGGATTTAAAGCCAAGTACTCGAAAGAATTTGTTGTCCCAGAGCCGTGTACAGGTATTCTGGCCTATCAGATTCGTGAAATTTTTGAAGGTGGTCATTTAGCTCATTTCTTAGACGGCAAAGTGAGGCCACTTATATGGGAGGTTGAAGGAAATTTGTTCGCTCTCGCTCGTAACCCGCCTCCTCGAGTTGACACCGGTATCCCAGCTAGTGAATGGAGAAACTGTTTTGAAATGTATGACCGGGCCCAGGGTCGATGGATTGGTTTGCCGGACCCTCCTTCTTATGCTGAATACCCTGTCGCTGCTGTTGATGAGTCTGGTGGTGGTGGTATTGATGAGGAGGAGGAGTTTGTTGGTTGTGATAACAGCGCTTTGAGAAGGCACTGTTACTATTCAAGCTTCTCTTATGCAATTTTAGGTAGCCAACTTTTCGTCTCTAATCCAAACTATCATGAATATTCATACAAGTGCAACCTTCCCAGCAAGGGTGAAAACTGGCCAGTTGAGTGGAAAGTTTCAAGTTTCCAATTTCAGGGTGTAACTCTAGGGGTTCAAACGGCACAAGGGTTTGTAGTCTTTTCCTATGATGTCAATTGCCGTCCGCCTGAATATGTGCTTAAACTTGAAGATAATCCCTACTTAAATATCAAACTGGATGAAGTTCAAGACTCCCAGTTTGTTCACCTAGGAGGTCAAAAAGTCTGCTTTCTCTATTCTAGAATGAGAGATTCCAAGTTGCTTGTAACCGCCATCACATTTGGCTTCCAACTCGAACAGAGAAATAGCGGCTTCAAAGTCAAAGCCAAATTTTATCCTACTCGCAACTGGGAGTTCCAAAATAAGGCTGGGTCTAAGGCTAAAGTTTGGGGTACAGAACAGATGGTTGGTGCTGTTGTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

402

Amino Acids

45.5

Weight (kDa)

4.89

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017356)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g04490
rosa_chinensis RchiOBHm_Chr5g0043831
rosa_laevigata RLG00000034216
rosa_multiflora Rmu_co8126332.1_g000001 Rmu_sc0002448.1_g000002 Rmu_sc0006691.1_g000009 Rmu_sc0008441.1_g000016
rosa_roxburghii Rroxscaffold_1G00037220
rosa_rugosa Rorug05G0208500
rosa_samantha Rh5AG292600 Rh5BG300500 Rh5DG309500
rosa_wichuraiana Rw5G027120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 45, 482, 908, 1053, 1092
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 803
AcsI RAATTY 4 cut(s) 332, 384, 457, 1112
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 5 cut(s) 72, 159, 323, 355, 1177
AfeI AGCGCT 1 cut(s) 676
AfiI CCNNNNNNNGG 5 cut(s) 356, 553, 791, 838, 1147
AgeI ACCGGT 1 cut(s) 500
AjnI CCWGG 1 cut(s) 552
AjuI GAANNNNNNNTTGG 2 cut(s) 1173, 1205
AluBI AGCT 3 cut(s) 407, 512, 705
AluI AGCT 3 cut(s) 407, 512, 705
Alw26I GTCTC 1 cut(s) 745
AlwI GGATC 1 cut(s) 216
Ama87I CYCGRG 1 cut(s) 489
Aor51HI AGCGCT 1 cut(s) 676
AoxI GGCC 5 cut(s) 24, 366, 431, 549, 803
ApaI GGGCCC 1 cut(s) 553
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 4 cut(s) 332, 384, 457, 1112
ArsI GACNNNNNNTTYG 2 cut(s) 965, 997
AsiGI ACCGGT 1 cut(s) 500
AspA2I CCTAGG 1 cut(s) 991
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 4 cut(s) 33, 549, 550, 577
AsuC2I CCSGG 1 cut(s) 548
AsuHPI GGTGA 2 cut(s) 806, 980
AsuII TTCGAA 1 cut(s) 231
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 2 cut(s) 33, 577
AvrII CCTAGG 1 cut(s) 991
AxyI CCTNAGG 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 553
BaeI ACNNNNGTAYC 2 cut(s) 487, 520
BalI TGGCCA 1 cut(s) 805
BanII GRGCYC 1 cut(s) 553
BbvI GCAGC 1 cut(s) 595
BccI CCATC 3 cut(s) 555, 1064, 1180
BceAI ACGGC 5 cut(s) 11, 334, 436, 879, 888
BciT130I CCWGG 1 cut(s) 554
BciVI GTATCC 1 cut(s) 515
BcnI CCSGG 1 cut(s) 548
BcoDI GTCTC 1 cut(s) 745
BfaI CTAG 5 cut(s) 212, 513, 851, 992, 1023
BfoI RGCGCY 1 cut(s) 678
BfuI GTATCC 1 cut(s) 515
BisI GCNGC 2 cut(s) 609, 1093
BlnI CCTAGG 1 cut(s) 991
BlsI GCNGC 2 cut(s) 610, 1094
BmcAI AGTACT 2 cut(s) 72, 323
Bme1390I CCNGG 2 cut(s) 548, 554
Bme18I GGWCC 2 cut(s) 33, 577
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 4 cut(s) 33, 549, 550, 577
BmiI GGNNCC 3 cut(s) 34, 551, 579
BmrFI CCNGG 2 cut(s) 548, 554
BmrI ACTGGG 3 cut(s) 103, 973, 1141
BmuI ACTGGG 3 cut(s) 103, 973, 1141
Bpu14I TTCGAA 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 552, 553, 991
BsaWI WCCGGW 1 cut(s) 500
BsaXI ACNNNNNCTCC 4 cut(s) 514, 544, 638, 668
Bsc4I CCNNNNNNNGG 5 cut(s) 356, 553, 791, 838, 1147
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 6 cut(s) 98, 806, 806, 963, 979, 1136
Bse21I CCTNAGG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 3 cut(s) 552, 553, 991
BseGI GGATG 2 cut(s) 103, 967
BseLI CCNNNNNNNGG 5 cut(s) 356, 553, 791, 838, 1147
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 6 cut(s) 98, 806, 806, 963, 979, 1136
BseRI GAGGAG 5 cut(s) 95, 477, 659, 662, 665
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 1 cut(s) 595
BseYI CCCAGC 3 cut(s) 508, 785, 1151
BshFI GGCC 5 cut(s) 26, 368, 433, 551, 805
BshTI ACCGGT 1 cut(s) 500
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 4 cut(s) 267, 501, 547, 575
BslFI GGGAC 2 cut(s) 294, 326
BslI CCNNNNNNNGG 5 cut(s) 356, 553, 791, 838, 1147
BsmAI GTCTC 1 cut(s) 745
BsmBI CGTCTC 1 cut(s) 745
BsmFI GGGAC 2 cut(s) 294, 326
BsnI GGCC 5 cut(s) 26, 368, 433, 551, 805
BsoBI CYCGRG 1 cut(s) 489
Bsp119I TTCGAA 1 cut(s) 231
Bsp120I GGGCCC 1 cut(s) 549
Bsp1286I GDGCHC 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 353
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 5 cut(s) 45, 482, 908, 1053, 1092
BspANI GGCC 5 cut(s) 26, 368, 433, 551, 805
BspCNI CTCAG 1 cut(s) 13
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 3 cut(s) 34, 551, 579
BspPI GGATC 1 cut(s) 216
BspT104I TTCGAA 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 500
BsrGI TGTACA 1 cut(s) 353
BsrI ACTGG 6 cut(s) 98, 806, 806, 963, 979, 1136
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 3 cut(s) 552, 553, 991
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 991
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 5 cut(s) 75, 162, 226, 530, 692
Bst6I CTCTTC 1 cut(s) 142
BstAUI TGTACA 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 21, 415, 1158
BstF5I GGATG 2 cut(s) 103, 967
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 745
BstMBI GATC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 554
BstSCI CCNGG 2 cut(s) 546, 552
BstSLI GKGCMC 1 cut(s) 553
BstV1I GCAGC 1 cut(s) 595
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 2 cut(s) 441, 813
BstYI RGATCY 1 cut(s) 208
Bsu36I CCTNAGG 1 cut(s) 21
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 5 cut(s) 26, 368, 433, 551, 805
BtsCI GGATG 2 cut(s) 103, 967
BtsIMutI CAGTG 1 cut(s) 688
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 1 cut(s) 757
CfoI GCGC 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 4 cut(s) 33, 549, 550, 577
Csp6I GTAC 5 cut(s) 71, 158, 322, 354, 1176
CspAI ACCGGT 1 cut(s) 500
CviAII CATG 1 cut(s) 758
CviQI GTAC 5 cut(s) 71, 158, 322, 354, 1176
DdeI CTNAG 3 cut(s) 21, 415, 1158
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraI TTTAAA 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 803
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
EciI GGCGGA 1 cut(s) 897
Eco130I CCWWGG 1 cut(s) 991
Eco24I GRGCYC 1 cut(s) 553
Eco47I GGWCC 2 cut(s) 33, 577
Eco47III AGCGCT 1 cut(s) 676
Eco57I CTGAAG 1 cut(s) 30
Eco81I CCTNAGG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 489
EcoO109I RGGNCCY 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 991
EcoT38I GRGCYC 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 991
Esp3I CGTCTC 1 cut(s) 745
FaeI CATG 1 cut(s) 761
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FaqI GGGAC 2 cut(s) 294, 326
FatI CATG 1 cut(s) 757
FauI CCCGC 2 cut(s) 52, 489
Fnu4HI GCNGC 2 cut(s) 609, 1093
FokI GGATG 2 cut(s) 110, 974
FriOI GRGCYC 1 cut(s) 553
Fsp4HI GCNGC 2 cut(s) 609, 1093
FspBI CTAG 5 cut(s) 212, 513, 851, 992, 1023
GlaI GCGC 1 cut(s) 676
GluI GCNGC 2 cut(s) 609, 1093
GsaI CCCAGC 3 cut(s) 512, 789, 1155
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 5 cut(s) 26, 368, 433, 551, 805
HapII CCGG 4 cut(s) 267, 501, 547, 575
HhaI GCGC 1 cut(s) 677
Hin1II CATG 1 cut(s) 761
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 703
HinfI GANTC 5 cut(s) 65, 376, 620, 974, 1034
HpaII CCGG 4 cut(s) 267, 501, 547, 575
HphI GGTGA 2 cut(s) 806, 980
Hpy166II GTNNAC 3 cut(s) 354, 496, 988
Hpy188I TCNGA 3 cut(s) 10, 64, 375
Hpy188III TCNNGA 6 cut(s) 212, 239, 380, 758, 971, 1023
Hpy8I GTNNAC 3 cut(s) 354, 496, 988
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 386, 446, 594, 678, 791
HpyCH4III ACNGT 5 cut(s) 75, 162, 226, 530, 692
HpyCH4V TGCA 2 cut(s) 716, 777
HpyF3I CTNAG 3 cut(s) 21, 415, 1158
Hsp92II CATG 1 cut(s) 761
HspAI GCGC 1 cut(s) 675
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 595
MaeI CTAG 5 cut(s) 212, 513, 851, 992, 1023
MaeIII GTNAC 4 cut(s) 476, 692, 844, 1048
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 3 cut(s) 23, 159, 944
MfeI CAATTG 1 cut(s) 898
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 553
MlsI TGGCCA 1 cut(s) 805
MluCI AATT 9 cut(s) 181, 259, 332, 384, 457, 717, 833, 898, 1112
MluNI TGGCCA 1 cut(s) 805
MlyI GAGTC 2 cut(s) 629, 968
MmeI TCCRAC 2 cut(s) 42, 1096
Mox20I TGGCCA 1 cut(s) 805
MscI TGGCCA 1 cut(s) 805
MseI TTAA 3 cut(s) 312, 924, 947
MslI CAYNNNNRTG 2 cut(s) 439, 772
Msp20I TGGCCA 1 cut(s) 805
MspI CCGG 4 cut(s) 267, 501, 547, 575
MspR9I CCNGG 2 cut(s) 548, 554
MunI CAATTG 1 cut(s) 898
MvaI CCWGG 1 cut(s) 554
NciI CCSGG 1 cut(s) 548
NdeII GATC 1 cut(s) 208
NlaIII CATG 1 cut(s) 761
NlaIV GGNNCC 3 cut(s) 34, 551, 579
NspV TTCGAA 1 cut(s) 231
PaeR7I CTCGAG 1 cut(s) 489
PagI TCATGA 1 cut(s) 757
PasI CCCWGGG 1 cut(s) 553
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 3 cut(s) 65, 376, 1034
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 2 cut(s) 610, 1094
PleI GAGTC 2 cut(s) 628, 968
PpsI GAGTC 2 cut(s) 628, 968
PpuMI RGGWCCY 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 552
PspFI CCCAGC 3 cut(s) 508, 785, 1151
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 3 cut(s) 34, 551, 579
PspOMI GGGCCC 1 cut(s) 549
PspPI GGNCC 4 cut(s) 33, 549, 550, 577
PspPPI RGGWCCY 1 cut(s) 33
PspXI VCTCGAGB 1 cut(s) 489
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 5 cut(s) 72, 159, 323, 355, 1177
RsaNI GTAC 5 cut(s) 71, 158, 322, 354, 1176
RseI CAYNNNNRTG 2 cut(s) 439, 772
SaqAI TTAA 3 cut(s) 312, 924, 947
SatI GCNGC 2 cut(s) 609, 1093
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 4 cut(s) 33, 549, 550, 577
ScaI AGTACT 2 cut(s) 72, 323
SchI GAGTC 2 cut(s) 629, 968
ScrFI CCNGG 2 cut(s) 548, 554
SduI GDGCHC 1 cut(s) 553
Sfr274I CTCGAG 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 2 cut(s) 33, 577
SlaI CTCGAG 1 cut(s) 489
SmiMI CAYNNNNRTG 2 cut(s) 439, 772
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
Sse9I AATT 9 cut(s) 181, 259, 332, 384, 457, 717, 833, 898, 1112
SsiI CCGC 5 cut(s) 45, 482, 908, 1053, 1092
SspI AATATT 2 cut(s) 253, 764
SspMI CTAG 5 cut(s) 212, 513, 851, 992, 1023
StyD4I CCNGG 2 cut(s) 546, 552
StyI CCWWGG 1 cut(s) 991
TaaI ACNGT 5 cut(s) 75, 162, 226, 530, 692
TaqI TCGA 5 cut(s) 231, 326, 490, 559, 1077
TasI AATT 9 cut(s) 181, 259, 332, 384, 457, 717, 833, 898, 1112
TatI WGTACW 3 cut(s) 70, 321, 353
TauI GCSGC 1 cut(s) 1095
TfiI GAWTC 3 cut(s) 65, 376, 1034
Tru1I TTAA 3 cut(s) 312, 924, 947
Tru9I TTAA 3 cut(s) 312, 924, 947
TscAI CASTG 1 cut(s) 695
TseI GCWGC 1 cut(s) 608
TspDTI ATGAA 3 cut(s) 756, 774, 978
TspRI CASTG 1 cut(s) 695
VpaK11BI GGWCC 2 cut(s) 33, 577
XapI RAATTY 4 cut(s) 332, 384, 457, 1112
XbaI TCTAGA 2 cut(s) 211, 1022
XcmI CCANNNNNNNNNTGG 2 cut(s) 516, 1148
XhoI CTCGAG 1 cut(s) 489
XmaJI CCTAGG 1 cut(s) 991
XspI CTAG 5 cut(s) 212, 513, 851, 992, 1023
ZrmI AGTACT 2 cut(s) 72, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.