Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017357

Physical Location & Seq

Genomic Coordinates Forward (+)

6768175 .. 6769380

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCTTCTCTCAACTTTGATCATCACCGCAGTCCAGAGGTTCTGATACAAGATTTTAATTCATATGTGAGGACACTGATACTAAACAGGCCTCGATATTTGAATGCTTTGTCCGGCGAAATGCTCTCCCAGCTGCTTCAACTGTTCCTTGCCGATGAGCATGATGCCAAAGTTAAACTGGTCATTCTCAAAGGTAATGGAAAAGCATTTTCTGTGGGCGGAGACATTGCTGAAGTAGCTCGTCTTCTCGATAGTGGTGATTGGAGGCTTGGTCTCAAAGCTACCGCAGAGGTCAGTAAATTAATTTACTTGATAGCAACATACAGTAAACCGCAGCTTTCGATTGCCAATGGCATGGCCATGGGACGAGGAGCTGCTCTTTACGTATCCTCTAGATTCCGTATGGCAACCGAGAATTCGATTTTTTCTATGCCAGAAACAGCTTTGGGAGCGGTTCCTGAAACAGGTGCCTCTTATTTCCTTTCCAGACTTCCTAGATTTTTTGGAGAATATCTTGCCCTAACTGGTGCCCAATTGGACGGTTCCGAAATGCTTGCTTGCGGTATAGCTACTCATTTCGTTCCTGCAGCCAAATTGGTTCTGCTAGAACAAGAGCTACTTGCTTCCACAGGTGCTTTAACCTCAAGTTGTGATGATCTTGTAAGTTATGTGTCATCCATTATAAGCAACTACTCAATCCAACCAGCTTTGAAAGAGAGAGGGAGTGCTTGGCACAATATGGATGTTATTGAAAAGTGCTTTTCAAAGAGCACGGTACAAGAAGTTGTAAGTGCCCTAGAGAAGGAGGCTACAGATGATATCGATGATGGTCATGTAAATGGTGGTAATAATCCATGGTTGACGTCCACAATTGAATCGCTTAAGAAGGCGTCGCCTATTAGTTTGAAGATTGCTTTGAGATCTATCAGAGAAGGAAGGTCGCAAGGACTGGGTGAGTGTCTGGTTCGAGAATATAGAATAGCCTGTCGTATTGCGAGGGGAGAAATCAGCACAGATTTCAGAGAGGGTTTGTCAGCTCTACTGGTCGACAGAGATAGGATCAAAAAGTGGGAGCCTTGTAAATTGGAACTCGTATCTGACCAGATGGTTGATCGGTATTTCTCGAAGTTGGAAAATGATGATGAAGAACTGAAAGAACTAGAGCTCCCTGCAAGATCCAACTCTCCTGCCTTTGCCAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

402

Amino Acids

44.17

Weight (kDa)

5.58

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	21 - 268	9.9e-27	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	23 - 374	2.3e-98	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017357)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06730 FvH4_7g06750 FvH4_7g16010
rosa_chinensis	RchiOBHm_Chr1g0333381 RchiOBHm_Chr1g0358891
rosa_laevigata	RLG00000027917 RLG00000029609
rosa_multiflora	Rmu_co8464851.1_g000001
rosa_rugosa	Rorug01G0109000
rosa_samantha	Rh1AG131800 Rh1BG101200 Rh1BG101700
rosa_wichuraiana	Rw1G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	683
AatII	GACGTC	1 cut(s)	866
AccB1I	GGYRCC	2 cut(s)	467, 527
AccBSI	CCGCTC	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	1047
AciI	CCGC	6 cut(s)	28, 219, 285, 332, 452, 561
AclWI	GGATC	2 cut(s)	1067, 1170
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	2 cut(s)	863, 890
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	2 cut(s)	464, 802
AflII	CTTAAG	1 cut(s)	881
AgsI	TTSAA	7 cut(s)	103, 140, 712, 752, 765, 875, 907
AloI	GAACNNNNNNTCC	2 cut(s)	1149, 1181
Alw21I	GWGCWC	2 cut(s)	773, 1167
Alw26I	GTCTC	2 cut(s)	216, 278
AlwI	GGATC	2 cut(s)	1067, 1170
AoxI	GGCC	2 cut(s)	89, 357
ApeKI	GCWGC	4 cut(s)	133, 334, 374, 587
ApoI	RAATTY	1 cut(s)	415
AseI	ATTAAT	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	17, 269, 965
BaeGI	GKGCMC	2 cut(s)	532, 796
BalI	TGGCCA	1 cut(s)	359
BanI	GGYRCC	2 cut(s)	467, 527
BanII	GRGCYC	1 cut(s)	1167
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	773, 1167
BbvI	GCAGC	4 cut(s)	120, 346, 361, 599
BccI	CCATC	2 cut(s)	821, 1099
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	216, 278
BfaI	CTAG	5 cut(s)	393, 495, 605, 797, 1160
BfmI	CTRYAG	2 cut(s)	585, 810
BfrI	CTTAAG	1 cut(s)	881
BfuI	GTATCC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	920
BisI	GCNGC	4 cut(s)	134, 335, 375, 588
BlsI	GCNGC	4 cut(s)	135, 336, 376, 589
BmiI	GGNNCC	5 cut(s)	456, 469, 529, 544, 1074
BmrI	ACTGGG	1 cut(s)	959
BmsI	GCATC	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	959
BpiI	GAAGAC	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	628
Bsa29I	ATCGAT	1 cut(s)	822
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	2 cut(s)	863, 890
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	360, 854
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 1149, 1179
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 802
Bse1I	ACTGG	4 cut(s)	183, 529, 954, 1047
Bse3DI	GCAATG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	822
BseDI	CCNNGG	2 cut(s)	360, 854
BseGI	GGATG	2 cut(s)	674, 748
BseLI	CCNNNNNNNGG	2 cut(s)	464, 802
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	4 cut(s)	183, 529, 954, 1047
BseRI	GAGGAG	1 cut(s)	384
BseSI	GKGCMC	2 cut(s)	532, 796
BseXI	GCAGC	4 cut(s)	120, 346, 361, 599
BseYI	CCCAGC	1 cut(s)	129
BshFI	GGCC	2 cut(s)	91, 359
BshNI	GGYRCC	2 cut(s)	467, 527
BshVI	ATCGAT	1 cut(s)	822
BsiHKAI	GWGCWC	2 cut(s)	773, 1167
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	464, 802
BsmAI	GTCTC	2 cut(s)	216, 278
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	91, 359
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	4 cut(s)	532, 773, 796, 1167
Bsp143I	GATC	6 cut(s)	19, 655, 920, 1059, 1111, 1175
Bsp19I	CCATGG	2 cut(s)	360, 854
BspACI	CCGC	6 cut(s)	28, 219, 285, 332, 452, 561
BspANI	GGCC	2 cut(s)	91, 359
BspDI	ATCGAT	1 cut(s)	822
BspLI	GGNNCC	5 cut(s)	456, 469, 529, 544, 1074
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	2 cut(s)	1067, 1170
BspT107I	GGYRCC	2 cut(s)	467, 527
BspTI	CTTAAG	1 cut(s)	881
BspTNI	GGTCTC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	4 cut(s)	183, 529, 954, 1047
BssECI	CCNNGG	2 cut(s)	360, 854
BssMI	GATC	6 cut(s)	19, 655, 920, 1059, 1111, 1175
BssNI	GRCGYC	2 cut(s)	863, 890
BssT1I	CCWWGG	2 cut(s)	360, 854
Bst4CI	ACNGT	4 cut(s)	144, 326, 542, 775
BstACI	GRCGYC	2 cut(s)	863, 890
BstAFI	CTTAAG	1 cut(s)	881
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	555, 559
BstDSI	CCRYGG	2 cut(s)	360, 854
BstENI	CCTNNNNNAGG	2 cut(s)	462, 800
BstF5I	GGATG	2 cut(s)	674, 748
BstKTI	GATC	6 cut(s)	22, 658, 923, 1062, 1114, 1178
BstMAI	GTCTC	2 cut(s)	216, 278
BstMBI	GATC	6 cut(s)	19, 655, 920, 1059, 1111, 1175
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 236, 449
BstSFI	CTRYAG	2 cut(s)	585, 810
BstSLI	GKGCMC	2 cut(s)	532, 796
BstSNI	TACGTA	1 cut(s)	385
BstV1I	GCAGC	4 cut(s)	120, 346, 361, 599
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	2 cut(s)	920, 1175
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	2 cut(s)	920, 1175
Bsu15I	ATCGAT	1 cut(s)	822
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	91, 359
BsuTUI	ATCGAT	1 cut(s)	822
BtgI	CCRYGG	2 cut(s)	360, 854
BtsCI	GGATG	2 cut(s)	674, 748
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	555, 559
ClaI	ATCGAT	1 cut(s)	822
CseI	GACGC	1 cut(s)	879
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	5 cut(s)	161, 355, 361, 833, 855
CviQI	GTAC	1 cut(s)	776
DpnI	GATC	6 cut(s)	21, 657, 922, 1061, 1113, 1177
DpnII	GATC	6 cut(s)	19, 655, 920, 1059, 1111, 1175
EaeI	YGGCCR	1 cut(s)	357
EciI	GGCGGA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	1165
Eco105I	TACGTA	1 cut(s)	385
Eco130I	CCWWGG	2 cut(s)	360, 854
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	1167
Eco31I	GGTCTC	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	820
Eco53kI	GAGCTC	1 cut(s)	1165
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	1165
EcoNI	CCTNNNNNAGG	2 cut(s)	462, 800
EcoRI	GAATTC	1 cut(s)	415
EcoRV	GATATC	1 cut(s)	820
EcoT14I	CCWWGG	2 cut(s)	360, 854
EcoT38I	GRGCYC	1 cut(s)	1167
ErhI	CCWWGG	2 cut(s)	360, 854
FaeI	CATG	5 cut(s)	164, 358, 364, 836, 858
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	5 cut(s)	160, 354, 360, 832, 854
FauNDI	CATATG	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	1047
Fnu4HI	GCNGC	4 cut(s)	134, 335, 375, 588
FokI	GGATG	2 cut(s)	661, 755
FriOI	GRGCYC	1 cut(s)	1167
Fsp4HI	GCNGC	4 cut(s)	134, 335, 375, 588
FspBI	CTAG	5 cut(s)	393, 495, 605, 797, 1160
GluI	GCNGC	4 cut(s)	134, 335, 375, 588
GsaI	CCCAGC	1 cut(s)	133
HaeIII	GGCC	2 cut(s)	91, 359
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	879
Hin1I	GRCGYC	2 cut(s)	863, 890
Hin1II	CATG	5 cut(s)	164, 358, 364, 836, 858
HincII	GTYRAC	2 cut(s)	861, 1048
HindII	GTYRAC	2 cut(s)	861, 1048
HinfI	GANTC	2 cut(s)	396, 875
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	3 cut(s)	17, 269, 965
Hpy166II	GTNNAC	4 cut(s)	329, 861, 867, 1048
Hpy188I	TCNGA	6 cut(s)	45, 547, 929, 1022, 1099, 1205
Hpy188III	TCNNGA	7 cut(s)	35, 248, 393, 458, 486, 968, 1123
Hpy8I	GTNNAC	4 cut(s)	329, 861, 867, 1048
Hpy99I	CGWCG	1 cut(s)	895
HpyAV	CCTTC	4 cut(s)	796, 880, 926, 930
HpyCH4III	ACNGT	4 cut(s)	144, 326, 542, 775
HpyCH4IV	ACGT	2 cut(s)	384, 863
HpyCH4V	TGCA	2 cut(s)	587, 1172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 236, 449
HpySE526I	ACGT	2 cut(s)	384, 863
Hsp92I	GRCGYC	2 cut(s)	863, 890
Hsp92II	CATG	5 cut(s)	164, 358, 364, 836, 858
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	6 cut(s)	19, 655, 920, 1059, 1111, 1175
LmnI	GCTCC	4 cut(s)	371, 449, 1072, 1170
Lsp1109I	GCAGC	4 cut(s)	120, 346, 361, 599
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	5 cut(s)	393, 495, 605, 797, 1160
MaeII	ACGT	2 cut(s)	384, 863
MalI	GATC	6 cut(s)	21, 657, 922, 1061, 1113, 1177
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	6 cut(s)	19, 655, 920, 1059, 1111, 1175
MboII	GAAGA	3 cut(s)	236, 919, 1157
MfeI	CAATTG	2 cut(s)	533, 870
MflI	RGATCY	2 cut(s)	920, 1175
MhlI	GDGCHC	4 cut(s)	532, 773, 796, 1167
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	8 cut(s)	58, 299, 303, 415, 533, 593, 870, 1082
MluNI	TGGCCA	1 cut(s)	359
MmeI	TCCRAC	3 cut(s)	724, 1110, 1203
Mox20I	TGGCCA	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	5 cut(s)	57, 174, 302, 638, 882
MslI	CAYNNNNRTG	2 cut(s)	359, 837
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	133
MspCI	CTTAAG	1 cut(s)	881
MspI	CCGG	1 cut(s)	114
MunI	CAATTG	2 cut(s)	533, 870
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	3 cut(s)	130, 236, 449
NcoI	CCATGG	2 cut(s)	360, 854
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	6 cut(s)	19, 655, 920, 1059, 1111, 1175
NlaIII	CATG	5 cut(s)	164, 358, 364, 836, 858
NlaIV	GGNNCC	5 cut(s)	456, 469, 529, 544, 1074
PceI	AGGCCT	1 cut(s)	91
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	396, 875
PkrI	GCNGC	4 cut(s)	135, 336, 376, 589
Ppu21I	YACGTR	1 cut(s)	385
PshBI	ATTAAT	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	1167
PspFI	CCCAGC	1 cut(s)	129
PspN4I	GGNNCC	5 cut(s)	456, 469, 529, 544, 1074
PsrI	GAACNNNNNNTAC	2 cut(s)	600, 632
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	2 cut(s)	920, 1175
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	2 cut(s)	359, 837
SacI	GAGCTC	1 cut(s)	1167
SalI	GTCGAC	1 cut(s)	1046
SaqAI	TTAA	5 cut(s)	57, 174, 302, 638, 882
SatI	GCNGC	4 cut(s)	134, 335, 375, 588
Sau3AI	GATC	6 cut(s)	19, 655, 920, 1059, 1111, 1175
SduI	GDGCHC	4 cut(s)	532, 773, 796, 1167
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	2 cut(s)	585, 810
SmiMI	CAYNNNNRTG	2 cut(s)	359, 837
SmlI	CTYRAG	2 cut(s)	643, 881
SmoI	CTYRAG	2 cut(s)	643, 881
SnaBI	TACGTA	1 cut(s)	385
Sse9I	AATT	8 cut(s)	58, 299, 303, 415, 533, 593, 870, 1082
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	6 cut(s)	28, 219, 285, 332, 452, 561
SspMI	CTAG	5 cut(s)	393, 495, 605, 797, 1160
SstI	GAGCTC	1 cut(s)	1167
StuI	AGGCCT	1 cut(s)	91
StyI	CCWWGG	2 cut(s)	360, 854
TaaI	ACNGT	4 cut(s)	144, 326, 542, 775
TaiI	ACGT	2 cut(s)	387, 866
TaqI	TCGA	8 cut(s)	94, 249, 341, 419, 822, 967, 1047, 1124
TasI	AATT	8 cut(s)	58, 299, 303, 415, 533, 593, 870, 1082
TfiI	GAWTC	2 cut(s)	396, 875
Tru1I	TTAA	5 cut(s)	57, 174, 302, 638, 882
Tru9I	TTAA	5 cut(s)	57, 174, 302, 638, 882
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	4 cut(s)	133, 334, 374, 587
TspDTI	ATGAA	2 cut(s)	51, 1158
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	81
Vha464I	CTTAAG	1 cut(s)	881
VspI	ATTAAT	1 cut(s)	302
XagI	CCTNNNNNAGG	2 cut(s)	462, 800
XapI	RAATTY	1 cut(s)	415
XbaI	TCTAGA	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	1047
XspI	CTAG	5 cut(s)	393, 495, 605, 797, 1160
ZraI	GACGTC	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.