Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017357

Physical Location & Seq

Genomic Coordinates Forward (+)

6772957 .. 6774367

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTTCTCTCAACTCGGATGGTCACCGCAATCCTGAGGTTCTGGTGCAAGATTCTAATCCATCTGTGAAAACAGTGACACTTAACAGGCCTCGACACTTGAATGCTTTGTCCGGCGAAATGCTCTCCCAGCTGCTTCAACTGTTCCTTGCCTATGAGCATGATGCCAAAGTTAAACTGGTCATTCTCAAAGGTAATGGAAAAGCATTTTCTGCAGGCGGAGACATTGCTGAAGTAGCTCGTCTTCTCGATAGTGGGGATTGGAGGCTTGGTCTCAAAGCTACCGCAGAGGTCTGTAAATTACTCTACTTGATAGCCACATACAGCAAACCGCAGGTTTCGATTGTCAATGGCAAGGTCATGGGACGGGGAGCTGCTATTTATGTATCCTCTAGATTCCGTATAGCAACTGAGAATTCGATTTTTTCTATGCCGGAAACAGCTTTGGGAGGGGTTCCTGAAAACTCTTATTTCCTTTCCAGACTTCCTAGATTCCTTGGAGAATATCTCGCCCTAACTGGTGCCCAATTGGACGGTCCTGAAATGCTTGCTTGCGGTATAGCTACTCATTTTGTTCCTGCAGCTGAATTGGCTATGCTAGAACAAGAGCTACTTGCTTCCATAGGTGCTTTAACCAGTGAAACAACCTCAAGCTGTGATGATCTTATAAGTTATGTGTCATCCATTATAAGTAAGTACTCAATCCAACCAGCTTTGAAAGAGAGAGGGAGTGCATGGCACAATATGGATGTTATTGAAAAGTGCTTTTCAAAGAGTACAGTAGAAGTTGTGAGTTCCCTAGAAAAGCAGGCTACAGATATAGATGGTGATAATCCATGGTTAACGTCCACAATTGAATCACTTAAGAAGGCGTCGCCTATTAGTTTGAAGATTGCTTTGAGATCTATCAGAGAAGGAAGATCGCAAGGACTGGGTGAGTGTCTGGTTCAAGAATATAGAATAGCCTGTCGTATTGCTAGGGGAGAAATCAGCACAGATTTCAGAGGGGGTTTCACAGCTCTACTTGTCGACAGAAATAGGATCAAAAAGTGGGAGCCTAGTGAATTGGAACTCGTCTCTGATCAGATGGTTGATCGGTATTTCTCCAAGTTGGAGGATGATGATGAAGTGAAAGAACTAGAGCTCCCTGCAAGATCCAACTTGCCTACCATTAACGTCCAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

396

Amino Acids

43.33

Weight (kDa)

5.49

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	20 - 204	8.9e-30	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	24 - 368	8.8e-96	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017357)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06730 FvH4_7g06750 FvH4_7g16010
rosa_chinensis	RchiOBHm_Chr1g0333381 RchiOBHm_Chr1g0358891
rosa_laevigata	RLG00000027917 RLG00000029609
rosa_multiflora	Rmu_co8464851.1_g000001
rosa_rugosa	Rorug01G0109000
rosa_samantha	Rh1AG131800 Rh1BG101200 Rh1BG101700
rosa_wichuraiana	Rw1G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	668, 689
Acc36I	ACCTGC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	1029
AciI	CCGC	5 cut(s)	28, 219, 285, 332, 555
AclWI	GGATC	2 cut(s)	1049, 1149
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	872
AfaI	GTAC	2 cut(s)	698, 778
AflII	CTTAAG	1 cut(s)	863
AgsI	TTSAA	8 cut(s)	103, 140, 718, 758, 771, 857, 889, 950
AloI	GAACNNNNNNTCC	2 cut(s)	1128, 1160
Alw21I	GWGCWC	1 cut(s)	1146
Alw26I	GTCTC	3 cut(s)	216, 278, 1081
AlwI	GGATC	2 cut(s)	1049, 1149
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	3 cut(s)	133, 374, 581
ApoI	RAATTY	1 cut(s)	415
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	3 cut(s)	17, 839, 947
AvaII	GGWCC	1 cut(s)	536
AxyI	CCTNAGG	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	1146
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	1146
BbvI	GCAGC	3 cut(s)	120, 361, 593
BccI	CCATC	4 cut(s)	14, 70, 818, 1081
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	1081
BcoDI	GTCTC	3 cut(s)	216, 278, 1081
BfaI	CTAG	7 cut(s)	393, 489, 599, 800, 978, 1059, 1139
BfmI	CTRYAG	3 cut(s)	213, 579, 813
BfrI	CTTAAG	1 cut(s)	863
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	397
BglII	AGATCT	1 cut(s)	902
BisI	GCNGC	3 cut(s)	134, 375, 582
BlsI	GCNGC	3 cut(s)	135, 376, 583
BmcAI	AGTACT	1 cut(s)	698
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	3 cut(s)	456, 523, 1056
BmrI	ACTGGG	1 cut(s)	941
BmsI	GCATC	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	941
BpiI	GAAGAC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	492, 524
BpuEI	CTTGAG	1 cut(s)	634
BsaBI	GATNNNNATC	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	872
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	496, 836
BsaXI	ACNNNNNCTCC	4 cut(s)	256, 286, 1128, 1158
Bse1I	ACTGG	4 cut(s)	183, 523, 636, 936
Bse21I	CCTNAGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	496, 836
BseGI	GGATG	4 cut(s)	25, 680, 754, 1123
BseJI	GATNNNNATC	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	27, 402
BseNI	ACTGG	4 cut(s)	183, 523, 636, 936
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	3 cut(s)	120, 361, 593
BseYI	CCCAGC	1 cut(s)	129
BshFI	GGCC	1 cut(s)	91
BshNI	GGYRCC	1 cut(s)	521
BsiHKAI	GWGCWC	1 cut(s)	1146
BsiSI	CCGG	2 cut(s)	114, 434
BslFI	GGGAC	1 cut(s)	378
BsmAI	GTCTC	3 cut(s)	216, 278, 1081
BsmBI	CGTCTC	1 cut(s)	1081
BsmFI	GGGAC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	526, 1146
Bsp143I	GATC	7 cut(s)	661, 902, 920, 1041, 1081, 1093, 1154
Bsp19I	CCATGG	1 cut(s)	836
BspACI	CCGC	5 cut(s)	28, 219, 285, 332, 555
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	2 cut(s)	28, 403
BspLI	GGNNCC	3 cut(s)	456, 523, 1056
BspMAI	CTGCAG	2 cut(s)	217, 583
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	2 cut(s)	1049, 1149
BspT107I	GGYRCC	1 cut(s)	521
BspTI	CTTAAG	1 cut(s)	863
BspTNI	GGTCTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	4 cut(s)	183, 523, 636, 936
BssECI	CCNNGG	2 cut(s)	496, 836
BssMI	GATC	7 cut(s)	661, 902, 920, 1041, 1081, 1093, 1154
BssNI	GRCGYC	1 cut(s)	872
BssT1I	CCWWGG	2 cut(s)	496, 836
Bst4CI	ACNGT	4 cut(s)	76, 144, 536, 781
BstACI	GRCGYC	1 cut(s)	872
BstAFI	CTTAAG	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	217, 549, 553, 810
BstDEI	CTNAG	2 cut(s)	36, 411
BstDSI	CCRYGG	1 cut(s)	836
BstEII	GGTNACC	1 cut(s)	23
BstF5I	GGATG	4 cut(s)	25, 680, 754, 1123
BstKTI	GATC	7 cut(s)	664, 905, 923, 1044, 1084, 1096, 1157
BstMAI	GTCTC	3 cut(s)	216, 278, 1081
BstMBI	GATC	7 cut(s)	661, 902, 920, 1041, 1081, 1093, 1154
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 212, 236, 590
BstPI	GGTNACC	1 cut(s)	23
BstSFI	CTRYAG	3 cut(s)	213, 579, 813
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	3 cut(s)	120, 361, 593
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	2 cut(s)	902, 1154
BstYI	RGATCY	2 cut(s)	902, 1154
Bsu36I	CCTNAGG	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	91
BtgI	CCRYGG	1 cut(s)	836
BtsCI	GGATG	4 cut(s)	25, 680, 754, 1123
BtsIMutI	CAGTG	2 cut(s)	81, 643
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	4 cut(s)	217, 549, 553, 810
Cfr13I	GGNCC	1 cut(s)	536
CseI	GACGC	1 cut(s)	861
Csp6I	GTAC	2 cut(s)	697, 777
CviAII	CATG	4 cut(s)	161, 361, 735, 837
CviQI	GTAC	2 cut(s)	697, 777
DdeI	CTNAG	2 cut(s)	36, 411
DpnI	GATC	7 cut(s)	663, 904, 922, 1043, 1083, 1095, 1156
DpnII	GATC	7 cut(s)	661, 902, 920, 1041, 1081, 1093, 1154
EciI	GGCGGA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	1144
Eco130I	CCWWGG	2 cut(s)	496, 836
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	1146
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	1144
Eco57I	CTGAAG	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	36
Eco91I	GGTNACC	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	1144
EcoO65I	GGTNACC	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	415
EcoT14I	CCWWGG	2 cut(s)	496, 836
EcoT38I	GRGCYC	1 cut(s)	1146
ErhI	CCWWGG	2 cut(s)	496, 836
Esp3I	CGTCTC	1 cut(s)	1081
FaeI	CATG	4 cut(s)	164, 364, 738, 840
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	4 cut(s)	160, 360, 734, 836
FbaI	TGATCA	1 cut(s)	1081
FblI	GTMKAC	1 cut(s)	1029
Fnu4HI	GCNGC	3 cut(s)	134, 375, 582
FokI	GGATG	4 cut(s)	32, 667, 761, 1130
FriOI	GRGCYC	1 cut(s)	1146
Fsp4HI	GCNGC	3 cut(s)	134, 375, 582
FspBI	CTAG	7 cut(s)	393, 489, 599, 800, 978, 1059, 1139
GluI	GCNGC	3 cut(s)	134, 375, 582
GsaI	CCCAGC	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	2 cut(s)	114, 434
HgaI	GACGC	1 cut(s)	861
Hin1I	GRCGYC	1 cut(s)	872
Hin1II	CATG	4 cut(s)	164, 364, 738, 840
HincII	GTYRAC	2 cut(s)	843, 1030
HindII	GTYRAC	2 cut(s)	843, 1030
HinfI	GANTC	4 cut(s)	53, 396, 492, 857
HpaI	GTTAAC	1 cut(s)	843
HpaII	CCGG	2 cut(s)	114, 434
HphI	GGTGA	3 cut(s)	17, 839, 947
Hpy166II	GTNNAC	3 cut(s)	843, 849, 1030
Hpy188I	TCNGA	5 cut(s)	19, 911, 1004, 1081, 1086
Hpy188III	TCNNGA	7 cut(s)	35, 248, 393, 458, 480, 539, 950
Hpy8I	GTNNAC	3 cut(s)	843, 849, 1030
Hpy99I	CGWCG	1 cut(s)	877
HpyAV	CCTTC	2 cut(s)	862, 908
HpyCH4III	ACNGT	4 cut(s)	76, 144, 536, 781
HpyCH4IV	ACGT	2 cut(s)	845, 1176
HpyCH4V	TGCA	5 cut(s)	49, 215, 581, 734, 1151
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 212, 236, 590
HpyF3I	CTNAG	2 cut(s)	36, 411
HpySE526I	ACGT	2 cut(s)	845, 1176
Hsp92I	GRCGYC	1 cut(s)	872
Hsp92II	CATG	4 cut(s)	164, 364, 738, 840
Ksp22I	TGATCA	1 cut(s)	1081
KspAI	GTTAAC	1 cut(s)	843
Kzo9I	GATC	7 cut(s)	661, 902, 920, 1041, 1081, 1093, 1154
LmnI	GCTCC	3 cut(s)	371, 1054, 1149
Lsp1109I	GCAGC	3 cut(s)	120, 361, 593
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	7 cut(s)	393, 489, 599, 800, 978, 1059, 1139
MaeII	ACGT	2 cut(s)	845, 1176
MaeIII	GTNAC	2 cut(s)	23, 76
MalI	GATC	7 cut(s)	663, 904, 922, 1043, 1083, 1095, 1156
MboI	GATC	7 cut(s)	661, 902, 920, 1041, 1081, 1093, 1154
MboII	GAAGA	3 cut(s)	236, 901, 930
MfeI	CAATTG	2 cut(s)	527, 852
MflI	RGATCY	2 cut(s)	902, 1154
MhlI	GDGCHC	2 cut(s)	526, 1146
MluCI	AATT	6 cut(s)	299, 415, 527, 587, 852, 1064
MmeI	TCCRAC	3 cut(s)	730, 1092, 1182
MseI	TTAA	6 cut(s)	84, 174, 632, 842, 864, 1173
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	2 cut(s)	133, 584
MspCI	CTTAAG	1 cut(s)	863
MspI	CCGG	2 cut(s)	114, 434
MunI	CAATTG	2 cut(s)	527, 852
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	4 cut(s)	130, 212, 236, 590
NcoI	CCATGG	1 cut(s)	836
NdeII	GATC	7 cut(s)	661, 902, 920, 1041, 1081, 1093, 1154
NlaIII	CATG	4 cut(s)	164, 364, 738, 840
NlaIV	GGNNCC	3 cut(s)	456, 523, 1056
NmuCI	GTSAC	2 cut(s)	23, 76
PceI	AGGCCT	1 cut(s)	91
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	4 cut(s)	53, 396, 492, 857
PkrI	GCNGC	3 cut(s)	135, 376, 583
PsiI	TTATAA	2 cut(s)	668, 689
Psp124BI	GAGCTC	1 cut(s)	1146
PspEI	GGTNACC	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	456, 523, 1056
PspPI	GGNCC	1 cut(s)	536
PsrI	GAACNNNNNNTAC	2 cut(s)	594, 626
PstI	CTGCAG	2 cut(s)	217, 583
PsuI	RGATCY	2 cut(s)	902, 1154
PvuII	CAGCTG	2 cut(s)	133, 584
RsaI	GTAC	2 cut(s)	698, 778
RsaNI	GTAC	2 cut(s)	697, 777
RseI	CAYNNNNRTG	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	1146
SalI	GTCGAC	1 cut(s)	1028
SaqAI	TTAA	6 cut(s)	84, 174, 632, 842, 864, 1173
SatI	GCNGC	3 cut(s)	134, 375, 582
Sau3AI	GATC	7 cut(s)	661, 902, 920, 1041, 1081, 1093, 1154
Sau96I	GGNCC	1 cut(s)	536
ScaI	AGTACT	1 cut(s)	698
SduI	GDGCHC	2 cut(s)	526, 1146
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	3 cut(s)	213, 579, 813
SinI	GGWCC	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	2 cut(s)	649, 863
SmoI	CTYRAG	2 cut(s)	649, 863
Sse9I	AATT	6 cut(s)	299, 415, 527, 587, 852, 1064
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	5 cut(s)	28, 219, 285, 332, 555
SspMI	CTAG	7 cut(s)	393, 489, 599, 800, 978, 1059, 1139
SstI	GAGCTC	1 cut(s)	1146
StuI	AGGCCT	1 cut(s)	91
StyI	CCWWGG	2 cut(s)	496, 836
TaaI	ACNGT	4 cut(s)	76, 144, 536, 781
TaiI	ACGT	2 cut(s)	848, 1179
TaqI	TCGA	5 cut(s)	94, 249, 341, 419, 1029
TasI	AATT	6 cut(s)	299, 415, 527, 587, 852, 1064
TatI	WGTACW	2 cut(s)	696, 776
TfiI	GAWTC	4 cut(s)	53, 396, 492, 857
Tru1I	TTAA	6 cut(s)	84, 174, 632, 842, 864, 1173
Tru9I	TTAA	6 cut(s)	84, 174, 632, 842, 864, 1173
TscAI	CASTG	2 cut(s)	81, 643
TseFI	GTSAC	2 cut(s)	23, 76
TseI	GCWGC	3 cut(s)	133, 374, 581
Tsp45I	GTSAC	2 cut(s)	23, 76
TspDTI	ATGAA	1 cut(s)	1140
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	2 cut(s)	81, 643
Vha464I	CTTAAG	1 cut(s)	863
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	1 cut(s)	415
XbaI	TCTAGA	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	1029
XspI	CTAG	7 cut(s)	393, 489, 599, 800, 978, 1059, 1139
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.