Rh1AG131800

3-hydroxyisobutyryl-CoA hydrolase 1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
24912942 .. 24942677
29736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG131800.1

Sequence Viewer

Length: 1380 bp
ATGAGAGTTCGCTGCATTTCTGAGGGAATTGTTGTTTTTGCATCAATAATGGTAACTCTTGGACTGCAAATTTTGTTTGAATCAAGAGCCTTTAATATTTGGTGGCTGTGCCGGCTAAACAGAAGACATCTGGTTCCACATAACATCTCATTTATCGATACAAACAAACTAGCCATGGTTTCTTTCAACTTGGATCATCACCGCAATCCAGAGGTTCTGATACAAGATTTTAATTCATCTGTGAGGATATTGACACTAAACAGGCCTCGACACTTTAATGCTTTGTCCGGCAAAATGCTCTCTCAGCTGCTTAGACTGTTCCTTGCCCATGACCATGATGTCAAAGTAAAAGTGGTCATTCTCAAAAGTAGTGGAGAAGCATTTTCTGTGGGTGGTGACATCATTGAAATTGCTCGACATTTATACAATGGTGATTTGAGGCATGGCCTCAAAACTACTGAAGAGGCCTATAAATTACTGTACTTGATAGCAACATACAGTAAACCCCAGGTTTCGATTCTCAATGGCATAGCCATGGGACGGGGAGCTGCTATTTATCTACCCTCTAGATTTCGTATAGCAACTGAGAATTCGTTGTTTTCTATGCCGGAAACAGCTTTGGGAGCGGTTCCTGAAACAGGTGCCTCTTATTTTCTGTCCAGACTTCCTGGATTCCTTGGAGAATATCTTGCCCTTACTGGTGCCCGATTGGACGGTCCTGAAATGCTTGCTTGCGGTCTAGCAACTCATTTTGTTCCCGCAACCAAGTTGGCTTTGCTAGAACAAGAGTTAATTGCTTCCATAGGTGCTTTAACCAATGAAAGAACCTCAAGCTGTGATCTTGTATTTTATGTTTCATCCATTATACATAAGTACTCAATCCAACCAGCTTTGAAAGAGAGAGGCAGTGCTTGGCACAATATGGATGTTATTGAAAAGTGCTTTTCAAAGAGAACAGTAGAAGAAGTTGTGAGTGCACTAGAGAAGGAGGCTACATATACTGATGGTCATGTAAATAATGGTGCTAATCCATGGTTAACATCCACAATTCAATCACTTAAGAAGGCGTCGCCCATAAGTTTGAAGATTTCTTTGAGATCTATTAGAGAAGGAAGGTCGCAAGGACTCGGTGAGTGTTTGGTTCGAGAATATAGAATGGTGTATCGTATTGTAACGGGGGAAATCAGCACAGATTTCAGAGAGGGTTGCACAGCTCTACTGGTCGACAAGGATAGGATCCAAAAGTGGGAGCCTTGTAAATTGGAACTCGTCTCTGACCAGATGGTTGATCGGTACTTCTCGAAGTTGGATGAAGTTGAAGAACTTAAAGAACTAGAGCTCCCTGCAAGATCCAACTTGCCTGCCATCGCCAAGCTTTGA

Protein Analysis

459

Amino Acids

51.5

Weight (kDa)

8.51

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_1 PF00378 77 - 273 2.3e-29 Enoyl-CoA hydratase/isomerase
ECH_2 PF16113 81 - 433 5.4e-101 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017357)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AccB1I GGYRCC 2 cut(s) 641, 701
AccBSI CCGCTC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 1224
AciI CCGC 4 cut(s) 202, 626, 735, 759
AclWI GGATC 4 cut(s) 201, 1231, 1244, 1344
AcsI RAATTY 2 cut(s) 69, 589
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 1067
AfaI GTAC 3 cut(s) 482, 875, 1295
AfiI CCNNNNNNNGG 3 cut(s) 540, 638, 1246
AflII CTTAAG 1 cut(s) 1058
AgsI TTSAA 9 cut(s) 80, 187, 407, 895, 935, 948, 1052, 1084, 1319
AjnI CCWGG 2 cut(s) 507, 667
AloI GAACNNNNNNTCC 2 cut(s) 1323, 1355
AluBI AGCT 8 cut(s) 307, 548, 617, 834, 890, 1214, 1339, 1375
AluI AGCT 8 cut(s) 307, 548, 617, 834, 890, 1214, 1339, 1375
Alw21I GWGCWC 2 cut(s) 979, 1341
Alw26I GTCTC 1 cut(s) 1276
Alw44I GTGCAC 1 cut(s) 975
AlwI GGATC 4 cut(s) 201, 1231, 1244, 1344
AoxI GGCC 3 cut(s) 263, 445, 465
ApaLI GTGCAC 1 cut(s) 975
ApeKI GCWGC 3 cut(s) 12, 307, 548
ApoI RAATTY 2 cut(s) 69, 589
AspS9I GGNCC 1 cut(s) 716
AsuHPI GGTGA 4 cut(s) 191, 407, 443, 1142
AvaII GGWCC 1 cut(s) 716
BaeGI GKGCMC 2 cut(s) 706, 979
BamHI GGATCC 1 cut(s) 1236
BanI GGYRCC 2 cut(s) 641, 701
BanII GRGCYC 1 cut(s) 1341
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 979, 1341
BbvI GCAGC 2 cut(s) 294, 535
BccI CCATC 3 cut(s) 998, 1276, 1373
BciT130I CCWGG 2 cut(s) 509, 669
BcoDI GTCTC 1 cut(s) 1276
BfaI CTAG 6 cut(s) 170, 567, 740, 779, 980, 1334
BfrI CTTAAG 1 cut(s) 1058
BglII AGATCT 1 cut(s) 1097
BisI GCNGC 3 cut(s) 13, 308, 549
BlsI GCNGC 3 cut(s) 14, 309, 550
BmcAI AGTACT 1 cut(s) 875
Bme1390I CCNGG 2 cut(s) 509, 669
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 6 cut(s) 135, 630, 643, 703, 1238, 1251
BmrFI CCNGG 2 cut(s) 509, 669
BmsI GCATC 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 814
Bsa29I ATCGAT 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 1067
BsaJI CCNNGG 5 cut(s) 174, 507, 534, 676, 1031
BsaXI ACNNNNNCTCC 2 cut(s) 1323, 1353
Bsc4I CCNNNNNNNGG 3 cut(s) 540, 638, 1246
Bse118I RCCGGY 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 703, 1224
BseBI CCWGG 2 cut(s) 509, 669
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 5 cut(s) 174, 507, 534, 676, 1031
BseGI GGATG 4 cut(s) 857, 931, 1040, 1315
BseLI CCNNNNNNNGG 3 cut(s) 540, 638, 1246
BseMII CTCAG 3 cut(s) 12, 317, 576
BseNI ACTGG 2 cut(s) 703, 1224
BseSI GKGCMC 2 cut(s) 706, 979
BseXI GCAGC 2 cut(s) 294, 535
BshFI GGCC 3 cut(s) 265, 447, 467
BshNI GGYRCC 2 cut(s) 641, 701
BshVI ATCGAT 1 cut(s) 156
BsiHKAI GWGCWC 2 cut(s) 979, 1341
BsiSI CCGG 3 cut(s) 112, 288, 608
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 3 cut(s) 540, 638, 1246
BsmAI GTCTC 1 cut(s) 1276
BsmBI CGTCTC 1 cut(s) 1276
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 3 cut(s) 265, 447, 467
Bsp1286I GDGCHC 3 cut(s) 706, 979, 1341
Bsp143I GATC 6 cut(s) 193, 838, 1097, 1236, 1288, 1349
Bsp19I CCATGG 3 cut(s) 174, 534, 1031
BspACI CCGC 4 cut(s) 202, 626, 735, 759
BspANI GGCC 3 cut(s) 265, 447, 467
BspCNI CTCAG 3 cut(s) 13, 316, 577
BspDI ATCGAT 1 cut(s) 156
BspLI GGNNCC 6 cut(s) 135, 630, 643, 703, 1238, 1251
BspPI GGATC 4 cut(s) 201, 1231, 1244, 1344
BspT107I GGYRCC 2 cut(s) 641, 701
BspTI CTTAAG 1 cut(s) 1058
BsrBI CCGCTC 1 cut(s) 626
BsrFI RCCGGY 1 cut(s) 111
BsrI ACTGG 2 cut(s) 703, 1224
BssAI RCCGGY 1 cut(s) 111
BssECI CCNNGG 5 cut(s) 174, 507, 534, 676, 1031
BssMI GATC 6 cut(s) 193, 838, 1097, 1236, 1288, 1349
BssNI GRCGYC 1 cut(s) 1067
BssT1I CCWWGG 4 cut(s) 174, 534, 676, 1031
Bst2UI CCWGG 2 cut(s) 509, 669
Bst4CI ACNGT 5 cut(s) 318, 480, 500, 716, 958
Bst6I CTCTTC 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 1067
BstAFI CTTAAG 1 cut(s) 1058
BstC8I GCNNGC 4 cut(s) 113, 729, 733, 1362
BstDEI CTNAG 4 cut(s) 21, 303, 311, 585
BstDSI CCRYGG 3 cut(s) 174, 534, 1031
BstENI CCTNNNNNAGG 1 cut(s) 636
BstF5I GGATG 4 cut(s) 857, 931, 1040, 1315
BstKTI GATC 6 cut(s) 196, 841, 1100, 1239, 1291, 1352
BstMAI GTCTC 1 cut(s) 1276
BstMBI GATC 6 cut(s) 193, 838, 1097, 1236, 1288, 1349
BstMWI GCNNNNNNNGC 3 cut(s) 112, 304, 623
BstNI CCWGG 2 cut(s) 509, 669
BstSCI CCNGG 2 cut(s) 507, 667
BstSLI GKGCMC 2 cut(s) 706, 979
BstV1I GCAGC 2 cut(s) 294, 535
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 3 cut(s) 1097, 1236, 1349
BstYI RGATCY 3 cut(s) 1097, 1236, 1349
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 3 cut(s) 265, 447, 467
BsuTUI ATCGAT 1 cut(s) 156
BtgI CCRYGG 3 cut(s) 174, 534, 1031
BtgZI GCGATG 1 cut(s) 1351
BtsCI GGATG 4 cut(s) 857, 931, 1040, 1315
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 1 cut(s) 913
Cac8I GCNNGC 4 cut(s) 113, 729, 733, 1362
Cfr10I RCCGGY 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 716
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 1 cut(s) 1056
Csp6I GTAC 3 cut(s) 481, 874, 1294
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 7 cut(s) 175, 329, 335, 443, 535, 1010, 1032
CviQI GTAC 3 cut(s) 481, 874, 1294
DdeI CTNAG 4 cut(s) 21, 303, 311, 585
DpnI GATC 6 cut(s) 195, 840, 1099, 1238, 1290, 1351
DpnII GATC 6 cut(s) 193, 838, 1097, 1236, 1288, 1349
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Ecl136II GAGCTC 1 cut(s) 1339
Eco130I CCWWGG 4 cut(s) 174, 534, 676, 1031
Eco147I AGGCCT 2 cut(s) 265, 467
Eco24I GRGCYC 1 cut(s) 1341
Eco47I GGWCC 1 cut(s) 716
Eco53kI GAGCTC 1 cut(s) 1339
Eco57I CTGAAG 1 cut(s) 480
EcoICRI GAGCTC 1 cut(s) 1339
EcoNI CCTNNNNNAGG 1 cut(s) 636
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 2 cut(s) 507, 667
EcoT14I CCWWGG 4 cut(s) 174, 534, 676, 1031
EcoT38I GRGCYC 1 cut(s) 1341
ErhI CCWWGG 4 cut(s) 174, 534, 676, 1031
Esp3I CGTCTC 1 cut(s) 1276
FaeI CATG 7 cut(s) 178, 332, 338, 446, 538, 1013, 1035
FaqI GGGAC 1 cut(s) 552
FatI CATG 7 cut(s) 174, 328, 334, 442, 534, 1009, 1031
FauI CCCGC 1 cut(s) 766
FblI GTMKAC 1 cut(s) 1224
Fnu4HI GCNGC 3 cut(s) 13, 308, 549
FokI GGATG 4 cut(s) 844, 938, 1027, 1322
FriOI GRGCYC 1 cut(s) 1341
Fsp4HI GCNGC 3 cut(s) 13, 308, 549
FspBI CTAG 6 cut(s) 170, 567, 740, 779, 980, 1334
GluI GCNGC 3 cut(s) 13, 308, 549
HaeIII GGCC 3 cut(s) 265, 447, 467
HapII CCGG 3 cut(s) 112, 288, 608
HgaI GACGC 1 cut(s) 1056
Hin1I GRCGYC 1 cut(s) 1067
Hin1II CATG 7 cut(s) 178, 332, 338, 446, 538, 1013, 1035
HincII GTYRAC 2 cut(s) 1038, 1225
HindII GTYRAC 2 cut(s) 1038, 1225
HindIII AAGCTT 1 cut(s) 1373
HinfI GANTC 4 cut(s) 80, 517, 672, 1125
HpaI GTTAAC 1 cut(s) 1038
HpaII CCGG 3 cut(s) 112, 288, 608
HphI GGTGA 4 cut(s) 191, 407, 443, 1142
Hpy166II GTNNAC 4 cut(s) 503, 977, 1038, 1225
Hpy188I TCNGA 4 cut(s) 22, 219, 1199, 1276
Hpy188III TCNNGA 8 cut(s) 84, 209, 567, 632, 660, 719, 1145, 1300
Hpy8I GTNNAC 4 cut(s) 503, 977, 1038, 1225
Hpy99I CGWCG 1 cut(s) 1072
HpyAV CCTTC 4 cut(s) 979, 1057, 1103, 1107
HpyCH4III ACNGT 5 cut(s) 318, 480, 500, 716, 958
HpyCH4V TGCA 6 cut(s) 15, 41, 67, 977, 1209, 1346
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 304, 623
HpyF3I CTNAG 4 cut(s) 21, 303, 311, 585
Hsp92I GRCGYC 1 cut(s) 1067
Hsp92II CATG 7 cut(s) 178, 332, 338, 446, 538, 1013, 1035
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
KspAI GTTAAC 1 cut(s) 1038
Kzo9I GATC 6 cut(s) 193, 838, 1097, 1236, 1288, 1349
LmnI GCTCC 4 cut(s) 545, 623, 1249, 1344
Lsp1109I GCAGC 2 cut(s) 294, 535
LweI GCATC 1 cut(s) 50
MaeI CTAG 6 cut(s) 170, 567, 740, 779, 980, 1334
MaeIII GTNAC 3 cut(s) 52, 395, 1171
MalI GATC 6 cut(s) 195, 840, 1099, 1238, 1290, 1351
MbiI CCGCTC 1 cut(s) 626
MboI GATC 6 cut(s) 193, 838, 1097, 1236, 1288, 1349
MboII GAAGA 5 cut(s) 135, 473, 974, 1096, 1331
MflI RGATCY 3 cut(s) 1097, 1236, 1349
MhlI GDGCHC 3 cut(s) 706, 979, 1341
MluCI AATT 9 cut(s) 27, 69, 232, 408, 473, 589, 792, 1047, 1259
MlyI GAGTC 1 cut(s) 1119
MmeI TCCRAC 3 cut(s) 907, 1287, 1377
MroNI GCCGGC 1 cut(s) 111
MseI TTAA 8 cut(s) 93, 231, 276, 791, 812, 1037, 1059, 1326
MslI CAYNNNNRTG 3 cut(s) 276, 333, 533
MspA1I CMGCKG 1 cut(s) 307
MspCI CTTAAG 1 cut(s) 1058
MspI CCGG 3 cut(s) 112, 288, 608
MspR9I CCNGG 2 cut(s) 509, 669
MvaI CCWGG 2 cut(s) 509, 669
MwoI GCNNNNNNNGC 3 cut(s) 112, 304, 623
NaeI GCCGGC 1 cut(s) 113
NcoI CCATGG 3 cut(s) 174, 534, 1031
NdeII GATC 6 cut(s) 193, 838, 1097, 1236, 1288, 1349
NgoMIV GCCGGC 1 cut(s) 111
NlaIII CATG 7 cut(s) 178, 332, 338, 446, 538, 1013, 1035
NlaIV GGNNCC 6 cut(s) 135, 630, 643, 703, 1238, 1251
NmuCI GTSAC 1 cut(s) 395
PceI AGGCCT 2 cut(s) 265, 467
PdiI GCCGGC 1 cut(s) 113
PfeI GAWTC 3 cut(s) 80, 517, 672
PfoI TCCNGGA 1 cut(s) 667
PkrI GCNGC 3 cut(s) 14, 309, 550
PleI GAGTC 1 cut(s) 1119
PpsI GAGTC 1 cut(s) 1119
Psp124BI GAGCTC 1 cut(s) 1341
Psp6I CCWGG 2 cut(s) 507, 667
PspGI CCWGG 2 cut(s) 507, 667
PspN4I GGNNCC 6 cut(s) 135, 630, 643, 703, 1238, 1251
PspPI GGNCC 1 cut(s) 716
PsuI RGATCY 3 cut(s) 1097, 1236, 1349
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 3 cut(s) 482, 875, 1295
RsaNI GTAC 3 cut(s) 481, 874, 1294
RseI CAYNNNNRTG 3 cut(s) 276, 333, 533
SacI GAGCTC 1 cut(s) 1341
SalI GTCGAC 1 cut(s) 1223
SaqAI TTAA 8 cut(s) 93, 231, 276, 791, 812, 1037, 1059, 1326
SatI GCNGC 3 cut(s) 13, 308, 549
Sau3AI GATC 6 cut(s) 193, 838, 1097, 1236, 1288, 1349
Sau96I GGNCC 1 cut(s) 716
ScaI AGTACT 1 cut(s) 875
SchI GAGTC 1 cut(s) 1119
ScrFI CCNGG 2 cut(s) 509, 669
SduI GDGCHC 3 cut(s) 706, 979, 1341
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 3 cut(s) 276, 333, 533
SmlI CTYRAG 2 cut(s) 829, 1058
SmoI CTYRAG 2 cut(s) 829, 1058
Sse9I AATT 9 cut(s) 27, 69, 232, 408, 473, 589, 792, 1047, 1259
SseBI AGGCCT 2 cut(s) 265, 467
SsiI CCGC 4 cut(s) 202, 626, 735, 759
SspI AATATT 1 cut(s) 97
SspMI CTAG 6 cut(s) 170, 567, 740, 779, 980, 1334
SstI GAGCTC 1 cut(s) 1341
StuI AGGCCT 2 cut(s) 265, 467
StyD4I CCNGG 2 cut(s) 507, 667
StyI CCWWGG 4 cut(s) 174, 534, 676, 1031
TaaI ACNGT 5 cut(s) 318, 480, 500, 716, 958
TaqI TCGA 7 cut(s) 156, 268, 415, 515, 1144, 1224, 1301
TasI AATT 9 cut(s) 27, 69, 232, 408, 473, 589, 792, 1047, 1259
TatI WGTACW 2 cut(s) 480, 873
TfiI GAWTC 3 cut(s) 80, 517, 672
Tru1I TTAA 8 cut(s) 93, 231, 276, 791, 812, 1037, 1059, 1326
Tru9I TTAA 8 cut(s) 93, 231, 276, 791, 812, 1037, 1059, 1326
TscAI CASTG 1 cut(s) 913
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 3 cut(s) 12, 307, 548
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 4 cut(s) 225, 834, 846, 1326
TspRI CASTG 1 cut(s) 913
Vha464I CTTAAG 1 cut(s) 1058
VneI GTGCAC 1 cut(s) 975
VpaK11BI GGWCC 1 cut(s) 716
XagI CCTNNNNNAGG 1 cut(s) 636
XapI RAATTY 2 cut(s) 69, 589
XbaI TCTAGA 1 cut(s) 566
XmiI GTMKAC 1 cut(s) 1224
XspI CTAG 6 cut(s) 170, 567, 740, 779, 980, 1334
ZrmI AGTACT 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.