Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0017357

Physical Location & Seq

Genomic Coordinates Reverse (-)

19552711 .. 19556004

Gene Structure 3294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0109000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGATCTGGTAAATAAATCTTTTAGTTTAGCTAGTTCTGTTCCAGCACCCAAGCTCGTGTCAGGATCATTCAACATCAGCAGTGGTTCTAAACAATTCTACAGAGTAGTACATGAACCGGATGGTAGGGATTATGACCAAACAACCTTTGTCAATAGCAAGTTTCAAGATATGGGGTTATCTAGTGCTACAAAAGCAAGTTCTATTACTGTGGAAGATGCATCCTCTACAAGGGATCTAACAGGATTGCCCTCTTCTACAAGAGCTTCATCAATTCCAGATTCTGGTTGGAGGCCTCGTGGGGTTTTGGTCGCACACTTGCAAGAGCACCTTCCGCTAGGTCTAGGTAATGTAGTTGAGAAATATTCAGGTGTTGCTGATATTAAGAAGAACGACACTAAAGAAGGGGCAATACTTAGCCTTTTGAATTTCTCTGCTGACAACTATGCAAATCAGATGGTTATGTACAGCAACCAAAATTGTGGGATCCATCTTTGGGATATAAGAACAAATTCAGATTCTTGGACATTGAAAGCAACTCCGGAGGAGGGCTATGTGTCTTCCCTAGTAACAGGCCCTTGTGAAAATTGGTTTGTGTCAGGATCTTCAAGGGGTGTGCTCACTCTGTGGGATATGAGGTTCCCTATTCCTGTGAATTCATGGCAGTATTCTGCTGTTTGCCCCATAGAGAAAATGTGTCTTTTCCTTCCTCCACCAAATGCTTCTGTATCTGCTGCTGCAAGGCCCCTAGTTTATGTTGCTGCAGGTTGCAATGAAGTTCCTCTTTGGAATGCAGAAAATGGCACCTGCCACCAGGTGTTGAGGGTTGCTAGTTATGAAAGTGATACTGAAATGTCCGAGATGCCTTGGGCCTTGGCGAGATCATCAACTAAAAATTCCAAAGTGGATATGAGACGGAATGTCAATCCTCATTACAGAGTTGATGAACTGAATAAACCACCTCCTCGCATTCCTGGCATCCGTTCATTGCTTCCCTTACCTGGGGGTGATTTTGTTAACTGGGGGAACCGACTTGAAGATACCCCTGATCGAAGTTACTGTATTTGTGGGCCAAACTTGAAGGGTGCTGGAAATGATGATTTCTATGGAACGCGGTCTAGCTTTGGCGTGCAAGTTGTGCAGGCCTACAGGCCTTCCCCTCAGTGTTCTTTTTCCTATAAGAGACAGAGACGGCCTCTAACAACAAAGTTGAAAACCAAGGCAGTTCTTGCAGCTGCTGCCACCGATACTGCTGCCTGCCATCGTGTTTCAATCCTTTCATTGGCCTCTGTTAAGTTGAATCAAAGACACTTAACATCAAGCAGTAGAGATGGGGCAATCAAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

449

Amino Acids

49.17

Weight (kDa)

8.9

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017357)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06730 FvH4_7g06750 FvH4_7g16010
rosa_chinensis	RchiOBHm_Chr1g0333381 RchiOBHm_Chr1g0358891
rosa_laevigata	RLG00000027917 RLG00000029609
rosa_multiflora	Rmu_co8464851.1_g000001
rosa_rugosa	Rorug01G0109000
rosa_samantha	Rh1AG131800 Rh1BG101200 Rh1BG101700
rosa_wichuraiana	Rw1G010920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	815
Acc36I	ACCTGC	2 cut(s)	755, 815
AccB1I	GGYRCC	1 cut(s)	803
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccII	CGCG	1 cut(s)	1114
AccIII	TCCGGA	1 cut(s)	541
AciI	CCGC	2 cut(s)	335, 1114
AclWI	GGATC	6 cut(s)	12, 73, 243, 481, 494, 610
AcsI	RAATTY	4 cut(s)	427, 511, 655, 895
AdeI	CACNNNGTG	2 cut(s)	627, 817
AfaI	GTAC	2 cut(s)	111, 467
AfiI	CCNNNNNNNGG	7 cut(s)	231, 284, 496, 548, 1001, 1002, 1282
AhdI	GACNNNNNGTC	1 cut(s)	920
AjnI	CCWGG	3 cut(s)	813, 973, 1000
AloI	GAACNNNNNNTCC	2 cut(s)	623, 655
AluBI	AGCT	5 cut(s)	32, 55, 266, 1122, 1235
AluI	AGCT	5 cut(s)	32, 55, 266, 1122, 1235
Alw21I	GWGCWC	2 cut(s)	330, 621
Alw26I	GTCTC	3 cut(s)	907, 1177, 1183
AlwI	GGATC	6 cut(s)	12, 73, 243, 481, 494, 610
AlwNI	CAGNNNCTG	2 cut(s)	284, 1238
Aor13HI	TCCGGA	1 cut(s)	541
AoxI	GGCC	9 cut(s)	293, 574, 743, 870, 1070, 1143, 1151, 1193, 1284
ApeKI	GCWGC	7 cut(s)	734, 737, 761, 1232, 1235, 1238, 1253
ApoI	RAATTY	4 cut(s)	427, 511, 655, 895
Asp700I	GAANNNNTTC	1 cut(s)	511
AspS9I	GGNCC	4 cut(s)	575, 744, 870, 1070
AsuHPI	GGTGA	1 cut(s)	1019
BamHI	GGATCC	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	803
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
BauI	CACGAG	2 cut(s)	56, 297
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	2 cut(s)	330, 621
BbvI	GCAGC	7 cut(s)	721, 724, 748, 1222, 1225, 1240, 1244
BccI	CCATC	5 cut(s)	116, 451, 498, 1269, 1325
BceAI	ACGGC	1 cut(s)	1208
BcgI	CGANNNNNNTGC	2 cut(s)	1235, 1269
BciT130I	CCWGG	3 cut(s)	815, 975, 1002
BcoDI	GTCTC	3 cut(s)	907, 1177, 1183
BfaI	CTAG	9 cut(s)	33, 183, 338, 344, 566, 749, 831, 1119, 1348
BfmI	CTRYAG	3 cut(s)	100, 762, 1147
BfuAI	ACCTGC	2 cut(s)	755, 815
BisI	GCNGC	7 cut(s)	735, 738, 762, 1233, 1236, 1239, 1254
BlsI	GCNGC	7 cut(s)	736, 739, 763, 1234, 1237, 1240, 1255
Bme1390I	CCNGG	3 cut(s)	815, 975, 1002
BmeRI	GACNNNNNGTC	1 cut(s)	920
BmgT120I	GGNCC	4 cut(s)	575, 744, 870, 1070
BmiI	GGNNCC	5 cut(s)	488, 641, 746, 805, 1028
BmrFI	CCNGG	3 cut(s)	815, 975, 1002
BmrI	ACTGGG	1 cut(s)	1030
BmsI	GCATC	4 cut(s)	208, 230, 852, 987
BmuI	ACTGGG	1 cut(s)	1030
BpiI	GAAGAC	1 cut(s)	552
BplI	GAGNNNNNCTC	2 cut(s)	1180, 1212
BsaJI	CCNNGG	4 cut(s)	866, 873, 1001, 1218
BsaWI	WCCGGW	2 cut(s)	118, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	7 cut(s)	231, 284, 496, 548, 1001, 1002, 1282
Bse1I	ACTGG	1 cut(s)	1025
Bse3DI	GCAATG	2 cut(s)	778, 986
BseAI	TCCGGA	1 cut(s)	541
BseBI	CCWGG	3 cut(s)	815, 975, 1002
BseDI	CCNNGG	4 cut(s)	866, 873, 1001, 1218
BseGI	GGATG	3 cut(s)	127, 221, 978
BseLI	CCNNNNNNNGG	7 cut(s)	231, 284, 496, 548, 1001, 1002, 1282
BseMI	GCAATG	2 cut(s)	778, 986
BseMII	CTCAG	1 cut(s)	1175
BseNI	ACTGG	1 cut(s)	1025
BseRI	GAGGAG	2 cut(s)	560, 954
BseXI	GCAGC	7 cut(s)	721, 724, 748, 1222, 1225, 1240, 1244
BsgI	GTGCAG	1 cut(s)	1160
Bsh1236I	CGCG	1 cut(s)	1114
BshFI	GGCC	9 cut(s)	295, 576, 745, 872, 1072, 1145, 1153, 1195, 1286
BshNI	GGYRCC	1 cut(s)	803
BsiHKAI	GWGCWC	2 cut(s)	330, 621
BsiSI	CCGG	2 cut(s)	119, 542
BslI	CCNNNNNNNGG	7 cut(s)	231, 284, 496, 548, 1001, 1002, 1282
BsmAI	GTCTC	3 cut(s)	907, 1177, 1183
BsmBI	CGTCTC	2 cut(s)	907, 1183
BsmI	GAATGC	2 cut(s)	796, 969
BsnI	GGCC	9 cut(s)	295, 576, 745, 872, 1072, 1145, 1153, 1195, 1286
Bsp1286I	GDGCHC	2 cut(s)	330, 621
Bsp13I	TCCGGA	1 cut(s)	541
Bsp1407I	TGTACA	1 cut(s)	465
Bsp143I	GATC	7 cut(s)	4, 65, 235, 486, 602, 881, 1048
BspACI	CCGC	2 cut(s)	335, 1114
BspANI	GGCC	9 cut(s)	295, 576, 745, 872, 1072, 1145, 1153, 1195, 1286
BspCNI	CTCAG	1 cut(s)	1174
BspEI	TCCGGA	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	1114
BspLI	GGNNCC	5 cut(s)	488, 641, 746, 805, 1028
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	2 cut(s)	755, 815
BspPI	GGATC	6 cut(s)	12, 73, 243, 481, 494, 610
BspT107I	GGYRCC	1 cut(s)	803
BsrDI	GCAATG	2 cut(s)	778, 986
BsrGI	TGTACA	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	1025
BssECI	CCNNGG	4 cut(s)	866, 873, 1001, 1218
BssMI	GATC	7 cut(s)	4, 65, 235, 486, 602, 881, 1048
BssSI	CACGAG	2 cut(s)	56, 297
BssT1I	CCWWGG	3 cut(s)	866, 873, 1218
Bst2BI	CACGAG	2 cut(s)	56, 297
Bst2UI	CCWGG	3 cut(s)	815, 975, 1002
Bst4CI	ACNGT	2 cut(s)	211, 1061
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	3 cut(s)	1138, 1229, 1238
BstAUI	TGTACA	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	1130, 1143, 1258
BstDEI	CTNAG	2 cut(s)	416, 1161
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	127, 221, 978
BstFNI	CGCG	1 cut(s)	1114
BstKTI	GATC	7 cut(s)	7, 68, 238, 489, 605, 884, 1051
BstMAI	GTCTC	3 cut(s)	907, 1177, 1183
BstMBI	GATC	7 cut(s)	4, 65, 235, 486, 602, 881, 1048
BstMWI	GCNNNNNNNGC	6 cut(s)	194, 334, 975, 1138, 1229, 1238
BstNI	CCWGG	3 cut(s)	815, 975, 1002
BstSCI	CCNGG	3 cut(s)	813, 973, 1000
BstSFI	CTRYAG	3 cut(s)	100, 762, 1147
BstUI	CGCG	1 cut(s)	1114
BstV1I	GCAGC	7 cut(s)	721, 724, 748, 1222, 1225, 1240, 1244
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	4 cut(s)	4, 235, 486, 602
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	4 cut(s)	4, 235, 486, 602
BsuRI	GGCC	9 cut(s)	295, 576, 745, 872, 1072, 1145, 1153, 1195, 1286
BtsCI	GGATG	3 cut(s)	127, 221, 978
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	2 cut(s)	88, 1169
BveI	ACCTGC	2 cut(s)	755, 815
Cac8I	GCNNGC	3 cut(s)	1130, 1143, 1258
CaiI	CAGNNNCTG	2 cut(s)	284, 1238
Cfr13I	GGNCC	4 cut(s)	575, 744, 870, 1070
CsiI	ACCWGGT	1 cut(s)	813
Csp6I	GTAC	2 cut(s)	110, 466
CviAII	CATG	2 cut(s)	113, 660
CviQI	GTAC	2 cut(s)	110, 466
DdeI	CTNAG	2 cut(s)	416, 1161
DpnI	GATC	7 cut(s)	6, 67, 237, 488, 604, 883, 1050
DpnII	GATC	7 cut(s)	4, 65, 235, 486, 602, 881, 1048
DraIII	CACNNNGTG	2 cut(s)	627, 817
DriI	GACNNNNNGTC	1 cut(s)	920
Eam1104I	CTCTTC	1 cut(s)	259
Eam1105I	GACNNNNNGTC	1 cut(s)	920
EarI	CTCTTC	1 cut(s)	259
Eco130I	CCWWGG	3 cut(s)	866, 873, 1218
Eco147I	AGGCCT	3 cut(s)	295, 1145, 1153
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoO109I	RGGNCCY	2 cut(s)	575, 744
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	3 cut(s)	813, 973, 1000
EcoT14I	CCWWGG	3 cut(s)	866, 873, 1218
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	3 cut(s)	866, 873, 1218
Esp3I	CGTCTC	2 cut(s)	907, 1183
FaeI	CATG	2 cut(s)	116, 663
FalI	AAGNNNNNCTT	4 cut(s)	315, 347, 768, 800
FatI	CATG	2 cut(s)	112, 659
Fnu4HI	GCNGC	7 cut(s)	735, 738, 762, 1233, 1236, 1239, 1254
FokI	GGATG	3 cut(s)	134, 208, 965
Fsp4HI	GCNGC	7 cut(s)	735, 738, 762, 1233, 1236, 1239, 1254
FspBI	CTAG	9 cut(s)	33, 183, 338, 344, 566, 749, 831, 1119, 1348
GluI	GCNGC	7 cut(s)	735, 738, 762, 1233, 1236, 1239, 1254
HaeIII	GGCC	9 cut(s)	295, 576, 745, 872, 1072, 1145, 1153, 1195, 1286
HapII	CCGG	2 cut(s)	119, 542
Hin1II	CATG	2 cut(s)	116, 663
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HinfI	GANTC	3 cut(s)	281, 518, 1300
HpaI	GTTAAC	1 cut(s)	1018
HpaII	CCGG	2 cut(s)	119, 542
HphI	GGTGA	1 cut(s)	1019
Hpy166II	GTNNAC	1 cut(s)	1018
Hpy188I	TCNGA	3 cut(s)	456, 517, 859
Hpy188III	TCNNGA	5 cut(s)	63, 167, 278, 542, 600
Hpy8I	GTNNAC	1 cut(s)	1018
HpyAV	CCTTC	5 cut(s)	341, 398, 716, 1075, 1164
HpyCH4III	ACNGT	2 cut(s)	211, 1061
HpyF10VI	GCNNNNNNNGC	6 cut(s)	194, 334, 975, 1138, 1229, 1238
HpyF3I	CTNAG	2 cut(s)	416, 1161
Hsp92II	CATG	2 cut(s)	116, 663
Kpn2I	TCCGGA	1 cut(s)	541
KspAI	GTTAAC	1 cut(s)	1018
Kzo9I	GATC	7 cut(s)	4, 65, 235, 486, 602, 881, 1048
Lsp1109I	GCAGC	7 cut(s)	721, 724, 748, 1222, 1225, 1240, 1244
LweI	GCATC	4 cut(s)	208, 230, 852, 987
MabI	ACCWGGT	1 cut(s)	813
MaeI	CTAG	9 cut(s)	33, 183, 338, 344, 566, 749, 831, 1119, 1348
MaeIII	GTNAC	2 cut(s)	568, 1055
MalI	GATC	7 cut(s)	6, 67, 237, 488, 604, 883, 1050
MboI	GATC	7 cut(s)	4, 65, 235, 486, 602, 881, 1048
MboII	GAAGA	6 cut(s)	227, 246, 400, 552, 597, 1049
MflI	RGATCY	4 cut(s)	4, 235, 486, 602
MhlI	GDGCHC	2 cut(s)	330, 621
MluCI	AATT	8 cut(s)	95, 273, 427, 478, 511, 586, 655, 895
MmeI	TCCRAC	1 cut(s)	269
Mph1103I	ATGCAT	1 cut(s)	223
MroI	TCCGGA	1 cut(s)	541
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	4 cut(s)	384, 1017, 1293, 1313
MspA1I	CMGCKG	1 cut(s)	1235
MspI	CCGG	2 cut(s)	119, 542
MspR9I	CCNGG	3 cut(s)	815, 975, 1002
Mva1269I	GAATGC	2 cut(s)	796, 969
MvaI	CCWGG	3 cut(s)	815, 975, 1002
MvnI	CGCG	1 cut(s)	1114
MwoI	GCNNNNNNNGC	6 cut(s)	194, 334, 975, 1138, 1229, 1238
NdeII	GATC	7 cut(s)	4, 65, 235, 486, 602, 881, 1048
NlaIII	CATG	2 cut(s)	116, 663
NlaIV	GGNNCC	5 cut(s)	488, 641, 746, 805, 1028
NsiI	ATGCAT	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	815
PceI	AGGCCT	3 cut(s)	295, 1145, 1153
PctI	GAATGC	2 cut(s)	796, 969
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	281, 518, 1300
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	7 cut(s)	736, 739, 763, 1234, 1237, 1240, 1255
Psp6I	CCWGG	3 cut(s)	813, 973, 1000
PspGI	CCWGG	3 cut(s)	813, 973, 1000
PspN4I	GGNNCC	5 cut(s)	488, 641, 746, 805, 1028
PspPI	GGNCC	4 cut(s)	575, 744, 870, 1070
PstI	CTGCAG	1 cut(s)	766
PstNI	CAGNNNCTG	2 cut(s)	284, 1238
PsuI	RGATCY	4 cut(s)	4, 235, 486, 602
PvuII	CAGCTG	1 cut(s)	1235
RsaI	GTAC	2 cut(s)	111, 467
RsaNI	GTAC	2 cut(s)	110, 466
SaqAI	TTAA	4 cut(s)	384, 1017, 1293, 1313
SatI	GCNGC	7 cut(s)	735, 738, 762, 1233, 1236, 1239, 1254
Sau3AI	GATC	7 cut(s)	4, 65, 235, 486, 602, 881, 1048
Sau96I	GGNCC	4 cut(s)	575, 744, 870, 1070
ScrFI	CCNGG	3 cut(s)	815, 975, 1002
SduI	GDGCHC	2 cut(s)	330, 621
SexAI	ACCWGGT	1 cut(s)	813
SfaNI	GCATC	4 cut(s)	208, 230, 852, 987
SfcI	CTRYAG	3 cut(s)	100, 762, 1147
Sse9I	AATT	8 cut(s)	95, 273, 427, 478, 511, 586, 655, 895
SseBI	AGGCCT	3 cut(s)	295, 1145, 1153
SsiI	CCGC	2 cut(s)	335, 1114
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	9 cut(s)	33, 183, 338, 344, 566, 749, 831, 1119, 1348
StuI	AGGCCT	3 cut(s)	295, 1145, 1153
StyD4I	CCNGG	3 cut(s)	813, 973, 1000
StyI	CCWWGG	3 cut(s)	866, 873, 1218
TaaI	ACNGT	2 cut(s)	211, 1061
TaqI	TCGA	1 cut(s)	1051
TasI	AATT	8 cut(s)	95, 273, 427, 478, 511, 586, 655, 895
TatI	WGTACW	2 cut(s)	109, 465
TfiI	GAWTC	3 cut(s)	281, 518, 1300
Tru1I	TTAA	4 cut(s)	384, 1017, 1293, 1313
Tru9I	TTAA	4 cut(s)	384, 1017, 1293, 1313
TscAI	CASTG	2 cut(s)	88, 1169
TseI	GCWGC	7 cut(s)	734, 737, 761, 1232, 1235, 1238, 1253
TspDTI	ATGAA	8 cut(s)	129, 258, 648, 789, 852, 960, 975, 1269
TspGWI	ACGGA	2 cut(s)	931, 971
TspRI	CASTG	2 cut(s)	88, 1169
Van91I	CCANNNNNTGG	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	4 cut(s)	427, 511, 655, 895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	9 cut(s)	33, 183, 338, 344, 566, 749, 831, 1119, 1348
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.