FvH4_7g08080

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000817
Physical Location & Seq
Reverse (-)
8012369 .. 8024576
12208 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08080.t4

Sequence Viewer

Length: 1284 bp
ATGTCTTCCAGTAAGAGTCCAACTCAGCACTTGAAGGATGCTGGATTGCAGAGTCAAATTGCCGATGCTGTGAACAGGCATAGCTCGGAAGCACATTGTTCACCAAAAAATCTAAGGGATGACAGTGATGTTCATCATAAAGATCAAGAAGCTATGGAACTTTATTCCCGAGCCAGAGCGCAGGAAGAAGAGATCCAATTTCTTCGTGGGCAAGTCACTGTTGCCTGTCTGAAGGAATTGCGGCTGCTGAACGAGAAGTATGCGTTGGAGAAGAAATTTGCTGACTTAAGAATGGCAATAGATGAGAAGCAGAATGAAGCCACTACTTCTGCATTAAATGAGTTGGCCCGCAGAAAAGGTGATCTTGAAGAAAATTTGAAATTAACTCACGATTTGAAGGCTGCAGATGATGAAAGATATGTCTTCATGTCATCCATGCTTGGGTTATTGGCTGAATATGGTATTTGGCCCCATGTCGTAAATGCTTCTGCCATATCTAACAGCTTAAAGCATCTACATGATGAATTGCAGTGGAAGATTAGAACTTCACATGAACAGCAAGGTTTTGACCGTTATACTGACGCGCAACGTATGGAGCCAACTGCAAAAGTTCAGCTCCACATGAATGATTTTACAGACACAAGAAATTTGATGCTAATTAATAAAGAAAATCCACAGCAGTTCACAGCCAATATAGATAGTAATACAACTCACAGGAATATGGATGGCTTTATTCTCCATGATTCATTTGATAAAGATGTTGCGTATGGGAGAGCTGAACAAACCAATGGCACCTCATATCCTCAGACACCTGATAATACATCCTCTATTTCACAAGGGCCTGGTATAGAGAATTTTCAGATAATTGGTGATGCGGTACCTGGAGGCAAACTTCTTGGATGTGGATTTCCAGTACGCGGAACTTCACTTTGCATGTTTCAGTGGGTTCGTCATCTTCAAGATGGCACTAGGGAGGTTATTGAAGGAGCTACAAATCCAGAATACATAGTCACAGCTGATGACGTTGATAAAACTATTGCTGTCGACTGCATACCAATGGATGATCAAGGCCGCCAGGGGGAACTAGTGAGGCATTTTGCTAATGATCAGAACAAAATTAAATGTGACCCGGAGATGCAGCTGGAGATTGACACACATATATCTAGAGGACAAGCCACTTTCATTGTTCTACTGCTGATGGATTCTGCTGAGAATTGGGAGCCAGCAACTCTATTTCTGAGAAGATTAAAGTTCCTTGTGGCTTCTCAACTCAATTTGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAB-IgPH

Protein Analysis

428

Amino Acids

48.3

Weight (kDa)

5.29

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IG_AIR9 PF23197 283 - 363 6.8e-11 AIR9 A9 domain
DUF7046 PF23080 404 - 490 1.4e-15 Domain of unknown function (DUF7046)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03560
fragaria_vesca FvH4_7g08080 FvH4_7g08080 FvH4_7g08080 FvH4_7g08080 FvH4_7g08080 FvH4_7g08080
malus_domestica MD07G1077700.v1.1
prunus_persica Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1
pyrus_communis pycom07g06140
rosa_chinensis RchiOBHm_Chr1g0341241
rosa_laevigata RLG00000029074
rosa_multiflora Rmu_sc0004092.1_g000040 Rmu_sc0042871.1_g000001
rosa_roxburghii Rroxscaffold_4G00311890
rosa_rugosa Rorug01G0158600.1 Rorug01G0158700.1 Rorug01G0158800.1 Rorug01G0158900.1 Rorug01G0159000.1
rosa_samantha Rh1AG172900 Rh1BG141000 Rh1CG161000 Rh1DG173300
rosa_wichuraiana Rw1G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 877
AccB1I GGYRCC 2 cut(s) 791, 877
AccI GTMKAC 1 cut(s) 1044
AccII CGCG 2 cut(s) 584, 918
AciI CCGC 5 cut(s) 241, 349, 875, 918, 1072
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 4 cut(s) 275, 373, 646, 853
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 2 cut(s) 879, 915
AfiI CCNNNNNNNGG 3 cut(s) 441, 917, 1078
AflII CTTAAG 1 cut(s) 286
AgsI TTSAA 6 cut(s) 34, 368, 379, 397, 959, 983
AhlI ACTAGT 1 cut(s) 1084
AjnI CCWGG 3 cut(s) 841, 880, 1074
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 8 cut(s) 84, 152, 504, 616, 776, 989, 1016, 1141
AluI AGCT 8 cut(s) 84, 152, 504, 616, 776, 989, 1016, 1141
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 4 cut(s) 345, 467, 839, 1069
ApeKI GCWGC 3 cut(s) 244, 401, 1138
ApoI RAATTY 4 cut(s) 275, 373, 646, 853
AseI ATTAAT 1 cut(s) 660
Asp718I GGTACC 1 cut(s) 877
AspLEI GCGC 2 cut(s) 181, 586
AspS9I GGNCC 3 cut(s) 346, 468, 839
AsuC2I CCSGG 1 cut(s) 1130
AsuHPI GGTGA 3 cut(s) 93, 371, 881
AvaI CYCGRG 1 cut(s) 168
BanI GGYRCC 2 cut(s) 791, 877
BbsI GAAGAC 1 cut(s) 415
BbvI GCAGC 3 cut(s) 231, 388, 1150
BccI CCATC 3 cut(s) 719, 956, 1192
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciT130I CCWGG 3 cut(s) 843, 882, 1076
BclI TGATCA 2 cut(s) 1063, 1105
BcnI CCSGG 1 cut(s) 1130
BcuI ACTAGT 1 cut(s) 1084
BfaI CTAG 3 cut(s) 969, 1085, 1164
BfmI CTRYAG 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 286
BisI GCNGC 5 cut(s) 242, 245, 402, 1072, 1139
BlsI GCNGC 5 cut(s) 243, 246, 403, 1073, 1140
Bme1390I CCNGG 4 cut(s) 843, 882, 1076, 1130
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 3 cut(s) 346, 468, 839
BmiI GGNNCC 5 cut(s) 470, 597, 793, 879, 1221
BmrFI CCNGG 4 cut(s) 843, 882, 1076, 1130
BmsI GCATC 6 cut(s) 28, 55, 520, 642, 862, 1125
BpiI GAAGAC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 2 cut(s) 903, 1163
BpuMI CCSGG 1 cut(s) 1130
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 1075
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 917, 1078
Bse1I ACTGG 2 cut(s) 9, 911
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 3 cut(s) 843, 882, 1076
BseDI CCNNGG 1 cut(s) 1075
BseGI GGATG 7 cut(s) 43, 124, 431, 730, 821, 905, 1066
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 441, 917, 1078
BseMII CTCAG 4 cut(s) 38, 818, 1200, 1229
BseNI ACTGG 2 cut(s) 9, 911
BseXI GCAGC 3 cut(s) 231, 388, 1150
Bsh1236I CGCG 2 cut(s) 584, 918
BshFI GGCC 4 cut(s) 347, 469, 841, 1071
BshNI GGYRCC 2 cut(s) 791, 877
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 1130
BslI CCNNNNNNNGG 3 cut(s) 441, 917, 1078
BsnI GGCC 4 cut(s) 347, 469, 841, 1071
BsoBI CYCGRG 1 cut(s) 168
Bsp143I GATC 5 cut(s) 142, 192, 361, 1063, 1105
BspACI CCGC 5 cut(s) 241, 349, 875, 918, 1072
BspANI GGCC 4 cut(s) 347, 469, 841, 1071
BspCNI CTCAG 4 cut(s) 37, 817, 1201, 1230
BspFNI CGCG 2 cut(s) 584, 918
BspLI GGNNCC 5 cut(s) 470, 597, 793, 879, 1221
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 2 cut(s) 791, 877
BspTI CTTAAG 1 cut(s) 286
BsrI ACTGG 2 cut(s) 9, 911
BssECI CCNNGG 1 cut(s) 1075
BssMI GATC 5 cut(s) 142, 192, 361, 1063, 1105
Bst2UI CCWGG 3 cut(s) 843, 882, 1076
Bst4CI ACNGT 3 cut(s) 125, 220, 572
Bst6I CTCTTC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 349, 1224
BstDEI CTNAG 5 cut(s) 24, 113, 804, 1209, 1238
BstF5I GGATG 7 cut(s) 43, 124, 431, 730, 821, 905, 1066
BstFNI CGCG 2 cut(s) 584, 918
BstHHI GCGC 2 cut(s) 181, 586
BstKTI GATC 5 cut(s) 145, 195, 364, 1066, 1108
BstMBI GATC 5 cut(s) 142, 192, 361, 1063, 1105
BstNI CCWGG 3 cut(s) 843, 882, 1076
BstNSI RCATGY 1 cut(s) 937
BstSCI CCNGG 4 cut(s) 841, 880, 1074, 1128
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 2 cut(s) 584, 918
BstV1I GCAGC 3 cut(s) 231, 388, 1150
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 4 cut(s) 347, 469, 841, 1071
BtsCI GGATG 7 cut(s) 43, 124, 431, 730, 821, 905, 1066
BtsI GCAGTG 1 cut(s) 536
BtsIMutI CAGTG 4 cut(s) 130, 216, 536, 947
Cac8I GCNNGC 2 cut(s) 349, 1224
CfoI GCGC 2 cut(s) 181, 586
Cfr13I GGNCC 3 cut(s) 346, 468, 839
CseI GACGC 1 cut(s) 590
Csp6I GTAC 2 cut(s) 878, 914
CspCI CAANNNNNGTGG 2 cut(s) 1165, 1200
CviAII CATG 8 cut(s) 427, 436, 473, 518, 551, 622, 740, 934
CviQI GTAC 2 cut(s) 878, 914
DdeI CTNAG 5 cut(s) 24, 113, 804, 1209, 1238
DpnI GATC 5 cut(s) 144, 194, 363, 1065, 1107
DpnII GATC 5 cut(s) 142, 192, 361, 1063, 1105
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 839
EcoRII CCWGG 3 cut(s) 841, 880, 1074
FaeI CATG 8 cut(s) 430, 439, 476, 521, 554, 625, 743, 937
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FatI CATG 8 cut(s) 426, 435, 472, 517, 550, 621, 739, 933
FauI CCCGC 1 cut(s) 356
FbaI TGATCA 2 cut(s) 1063, 1105
FblI GTMKAC 1 cut(s) 1044
Fnu4HI GCNGC 5 cut(s) 242, 245, 402, 1072, 1139
FokI GGATG 7 cut(s) 50, 131, 418, 737, 808, 912, 1073
Fsp4HI GCNGC 5 cut(s) 242, 245, 402, 1072, 1139
FspBI CTAG 3 cut(s) 969, 1085, 1164
GlaI GCGC 2 cut(s) 180, 585
GluI GCNGC 5 cut(s) 242, 245, 402, 1072, 1139
GsuI CTGGAG 2 cut(s) 903, 1163
HaeIII GGCC 4 cut(s) 347, 469, 841, 1071
HapII CCGG 1 cut(s) 1130
HgaI GACGC 1 cut(s) 590
HhaI GCGC 2 cut(s) 181, 586
Hin1II CATG 8 cut(s) 430, 439, 476, 521, 554, 625, 743, 937
Hin6I GCGC 2 cut(s) 179, 584
HinP1I GCGC 2 cut(s) 179, 584
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HinfI GANTC 4 cut(s) 16, 52, 743, 1202
HpaII CCGG 1 cut(s) 1130
HphI GGTGA 3 cut(s) 93, 371, 881
Hpy166II GTNNAC 4 cut(s) 73, 101, 684, 1045
Hpy188I TCNGA 6 cut(s) 88, 231, 807, 861, 1110, 1239
Hpy188III TCNNGA 7 cut(s) 146, 168, 365, 389, 959, 998, 1164
Hpy8I GTNNAC 4 cut(s) 73, 101, 684, 1045
HpyAV CCTTC 4 cut(s) 28, 226, 391, 977
HpyCH4III ACNGT 3 cut(s) 125, 220, 572
HpyCH4IV ACGT 2 cut(s) 589, 1023
HpyCH4V TGCA 8 cut(s) 49, 332, 404, 529, 605, 933, 1050, 1138
HpyF3I CTNAG 5 cut(s) 24, 113, 804, 1209, 1238
HpySE526I ACGT 2 cut(s) 589, 1023
Hsp92II CATG 8 cut(s) 430, 439, 476, 521, 554, 625, 743, 937
HspAI GCGC 2 cut(s) 179, 584
KpnI GGTACC 1 cut(s) 881
Ksp22I TGATCA 2 cut(s) 1063, 1105
Kzo9I GATC 5 cut(s) 142, 192, 361, 1063, 1105
LmnI GCTCC 4 cut(s) 595, 621, 986, 1219
Lsp1109I GCAGC 3 cut(s) 231, 388, 1150
LweI GCATC 6 cut(s) 28, 55, 520, 642, 862, 1125
MaeI CTAG 3 cut(s) 969, 1085, 1164
MaeII ACGT 2 cut(s) 589, 1023
MaeIII GTNAC 3 cut(s) 214, 1009, 1124
MalI GATC 5 cut(s) 144, 194, 363, 1065, 1107
MboI GATC 5 cut(s) 142, 192, 361, 1063, 1105
MboII GAAGA 9 cut(s) 194, 197, 200, 283, 380, 415, 547, 947, 1254
MflI RGATCY 1 cut(s) 192
MlyI GAGTC 2 cut(s) 25, 61
MmeI TCCRAC 2 cut(s) 44, 246
MnlI CCTC 7 cut(s) 805, 813, 835, 878, 967, 1083, 1160
MseI TTAA 7 cut(s) 287, 335, 383, 506, 660, 1119, 1247
MslI CAYNNNNRTG 3 cut(s) 516, 624, 1055
MspA1I CMGCKG 2 cut(s) 1016, 1141
MspCI CTTAAG 1 cut(s) 286
MspI CCGG 1 cut(s) 1130
MspR9I CCNGG 4 cut(s) 843, 882, 1076, 1130
MvaI CCWGG 3 cut(s) 843, 882, 1076
MvnI CGCG 2 cut(s) 584, 918
NciI CCSGG 1 cut(s) 1130
NdeII GATC 5 cut(s) 142, 192, 361, 1063, 1105
NlaIII CATG 8 cut(s) 430, 439, 476, 521, 554, 625, 743, 937
NlaIV GGNNCC 5 cut(s) 470, 597, 793, 879, 1221
NmuCI GTSAC 3 cut(s) 214, 1009, 1124
NspI RCATGY 1 cut(s) 937
PfeI GAWTC 2 cut(s) 743, 1202
PkrI GCNGC 5 cut(s) 243, 246, 403, 1073, 1140
PleI GAGTC 2 cut(s) 24, 60
PpsI GAGTC 2 cut(s) 24, 60
PshBI ATTAAT 1 cut(s) 660
Psp6I CCWGG 3 cut(s) 841, 880, 1074
PspGI CCWGG 3 cut(s) 841, 880, 1074
PspN4I GGNNCC 5 cut(s) 470, 597, 793, 879, 1221
PspPI GGNCC 3 cut(s) 346, 468, 839
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 192
PvuII CAGCTG 2 cut(s) 1016, 1141
RsaI GTAC 2 cut(s) 879, 915
RsaNI GTAC 2 cut(s) 878, 914
RseI CAYNNNNRTG 3 cut(s) 516, 624, 1055
SalI GTCGAC 1 cut(s) 1043
SaqAI TTAA 7 cut(s) 287, 335, 383, 506, 660, 1119, 1247
SatI GCNGC 5 cut(s) 242, 245, 402, 1072, 1139
Sau3AI GATC 5 cut(s) 142, 192, 361, 1063, 1105
Sau96I GGNCC 3 cut(s) 346, 468, 839
SchI GAGTC 2 cut(s) 25, 61
ScrFI CCNGG 4 cut(s) 843, 882, 1076, 1130
SfaNI GCATC 6 cut(s) 28, 55, 520, 642, 862, 1125
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 3 cut(s) 516, 624, 1055
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
SpeI ACTAGT 1 cut(s) 1084
SsiI CCGC 5 cut(s) 241, 349, 875, 918, 1072
SspMI CTAG 3 cut(s) 969, 1085, 1164
StyD4I CCNGG 4 cut(s) 841, 880, 1074, 1128
TaaI ACNGT 3 cut(s) 125, 220, 572
TaiI ACGT 2 cut(s) 592, 1026
TaqI TCGA 1 cut(s) 1044
TauI GCSGC 2 cut(s) 244, 1074
TfiI GAWTC 2 cut(s) 743, 1202
Tru1I TTAA 7 cut(s) 287, 335, 383, 506, 660, 1119, 1247
Tru9I TTAA 7 cut(s) 287, 335, 383, 506, 660, 1119, 1247
TscAI CASTG 4 cut(s) 130, 223, 536, 947
TseFI GTSAC 3 cut(s) 214, 1009, 1124
TseI GCWGC 3 cut(s) 244, 401, 1138
Tsp45I GTSAC 3 cut(s) 214, 1009, 1124
TspDTI ATGAA 9 cut(s) 122, 330, 415, 426, 537, 567, 638, 735, 1171
TspRI CASTG 4 cut(s) 130, 223, 536, 947
Vha464I CTTAAG 1 cut(s) 286
VspI ATTAAT 1 cut(s) 660
XapI RAATTY 4 cut(s) 275, 373, 646, 853
XbaI TCTAGA 1 cut(s) 1163
XceI RCATGY 1 cut(s) 937
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 1044
XspI CTAG 3 cut(s) 969, 1085, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.