Rmu_sc0042871.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042871.1
OG0000817
Physical Location & Seq
Reverse (-)
5894 .. 9127
3234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042871.1_g000001.1.cds

Sequence Viewer

Length: 564 bp
atgtcttccagtaagagttcatctcaacacttaaaggatgctggattgcagagtcaaattgctgatgctgtgaacaggcataactttgaagcacatcgttctccgaaaagtttaagggatgacagtgatgttcatcataaagatcaagaagctacggaactttattcccgagccagagcgcaggaagaagagatccaatttcttcgtgggcaagtcactgttgcctgtgtgaaggaattgcggctgttgaatgagaagtatgcattggagaagaaattcgctgacttacgaatggcaattgatgagaagcagaatgaagccactacttctgcattaaatgagttggcccgcagaaaaggtgatcttgaagaaaacttgaaattaactcacgatttgaaggctgcagatgatgagagatatgtcttcatgtcatccatgcttgggttattggctgaatatggtatttggccccatgtcataaatgcttctgccatatccaacagtttaaagcatctgcatgatgaattgcagtggaagattagaacttcacatgtggggagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAB-IgPH

Protein Analysis

187

Amino Acids

21.28

Weight (kDa)

6.2

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03560
fragaria_vesca FvH4_7g08080 FvH4_7g08080 FvH4_7g08080 FvH4_7g08080 FvH4_7g08080 FvH4_7g08080
malus_domestica MD07G1077700.v1.1
prunus_persica Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1
pyrus_communis pycom07g06140
rosa_chinensis RchiOBHm_Chr1g0341241
rosa_laevigata RLG00000029074
rosa_multiflora Rmu_sc0004092.1_g000040 Rmu_sc0042871.1_g000001
rosa_roxburghii Rroxscaffold_4G00311890
rosa_rugosa Rorug01G0158600.1 Rorug01G0158700.1 Rorug01G0158800.1 Rorug01G0158900.1 Rorug01G0159000.1
rosa_samantha Rh1AG172900 Rh1BG141000 Rh1CG161000 Rh1DG173300
rosa_wichuraiana Rw1G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 241, 349
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 441
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 5 cut(s) 89, 250, 368, 379, 397
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 2 cut(s) 152, 561
AluI AGCT 2 cut(s) 152, 561
AlwI GGATC 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 168
AoxI GGCC 2 cut(s) 345, 467
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 346, 468
AsuHPI GGTGA 1 cut(s) 371
AvaI CYCGRG 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 415
BbvI GCAGC 1 cut(s) 388
BfaI CTAG 1 cut(s) 562
BfmI CTRYAG 1 cut(s) 402
BisI GCNGC 2 cut(s) 242, 402
BlsI GCNGC 2 cut(s) 243, 403
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 346, 468
BmiI GGNNCC 1 cut(s) 470
BmsI GCATC 3 cut(s) 28, 55, 520
BpiI GAAGAC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BsaBI GATNNNNATC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse1I ACTGG 1 cut(s) 9
Bse8I GATNNNNATC 1 cut(s) 132
BseGI GGATG 3 cut(s) 43, 124, 431
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 388
BshFI GGCC 2 cut(s) 347, 469
BsiHKCI CYCGRG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 441
BsnI GGCC 2 cut(s) 347, 469
BsoBI CYCGRG 1 cut(s) 168
Bsp143I GATC 3 cut(s) 142, 192, 361
BspACI CCGC 2 cut(s) 241, 349
BspANI GGCC 2 cut(s) 347, 469
BspLI GGNNCC 1 cut(s) 470
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 9
BssMI GATC 3 cut(s) 142, 192, 361
Bst4CI ACNGT 3 cut(s) 125, 220, 503
Bst6I CTCTTC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 349
BstF5I GGATG 3 cut(s) 43, 124, 431
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 3 cut(s) 145, 195, 364
BstMBI GATC 3 cut(s) 142, 192, 361
BstNSI RCATGY 1 cut(s) 554
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 2 cut(s) 347, 469
BtsCI GGATG 3 cut(s) 43, 124, 431
BtsI GCAGTG 1 cut(s) 536
BtsIMutI CAGTG 3 cut(s) 130, 216, 536
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 346, 468
CviAII CATG 5 cut(s) 427, 436, 473, 518, 551
CviJI RGCY 9 cut(s) 152, 173, 244, 320, 347, 401, 452, 469, 561
CviKI_1 RGCY 9 cut(s) 152, 173, 244, 320, 347, 401, 452, 469, 561
DpnI GATC 3 cut(s) 144, 194, 363
DpnII GATC 3 cut(s) 142, 192, 361
DraI TTTAAA 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 265
FaeI CATG 5 cut(s) 430, 439, 476, 521, 554
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FatI CATG 5 cut(s) 426, 435, 472, 517, 550
FauI CCCGC 1 cut(s) 356
Fnu4HI GCNGC 2 cut(s) 242, 402
FokI GGATG 3 cut(s) 50, 131, 418
Fsp4HI GCNGC 2 cut(s) 242, 402
FspBI CTAG 1 cut(s) 562
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 242, 402
HaeIII GGCC 2 cut(s) 347, 469
HhaI GCGC 1 cut(s) 181
Hin1II CATG 5 cut(s) 430, 439, 476, 521, 554
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 52
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 4 cut(s) 146, 168, 365, 389
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 226, 391
HpyCH4III ACNGT 3 cut(s) 125, 220, 503
HpyCH4V TGCA 6 cut(s) 49, 263, 332, 404, 517, 529
Hsp92II CATG 5 cut(s) 430, 439, 476, 521, 554
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 3 cut(s) 142, 192, 361
LmnI GCTCC 1 cut(s) 558
LpnPI CCDG 6 cut(s) 22, 27, 61, 167, 187, 238
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 3 cut(s) 28, 55, 520
MaeI CTAG 1 cut(s) 562
MaeIII GTNAC 1 cut(s) 214
MalI GATC 3 cut(s) 144, 194, 363
MboI GATC 3 cut(s) 142, 192, 361
MboII GAAGA 7 cut(s) 194, 197, 200, 283, 380, 415, 547
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 1 cut(s) 192
MluCI AATT 7 cut(s) 57, 197, 236, 275, 297, 380, 524
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 522
Mph1103I ATGCAT 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 5 cut(s) 32, 113, 335, 383, 506
MslI CAYNNNNRTG 1 cut(s) 516
MunI CAATTG 1 cut(s) 297
NdeII GATC 3 cut(s) 142, 192, 361
NlaIII CATG 5 cut(s) 430, 439, 476, 521, 554
NlaIV GGNNCC 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 1 cut(s) 554
PciI ACATGT 1 cut(s) 550
PdmI GAANNNNTTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 243, 403
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PscI ACATGT 1 cut(s) 550
PspN4I GGNNCC 1 cut(s) 470
PspPI GGNCC 2 cut(s) 346, 468
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 516
SaqAI TTAA 5 cut(s) 32, 113, 335, 383, 506
SatI GCNGC 2 cut(s) 242, 402
Sau3AI GATC 3 cut(s) 142, 192, 361
Sau96I GGNCC 2 cut(s) 346, 468
SchI GAGTC 1 cut(s) 61
SetI ASST 3 cut(s) 154, 361, 563
SfaNI GCATC 3 cut(s) 28, 55, 520
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 516
Sse9I AATT 7 cut(s) 57, 197, 236, 275, 297, 380, 524
SsiI CCGC 2 cut(s) 241, 349
SspMI CTAG 1 cut(s) 562
TaaI ACNGT 3 cut(s) 125, 220, 503
TasI AATT 7 cut(s) 57, 197, 236, 275, 297, 380, 524
TauI GCSGC 1 cut(s) 244
Tru1I TTAA 5 cut(s) 32, 113, 335, 383, 506
Tru9I TTAA 5 cut(s) 32, 113, 335, 383, 506
TscAI CASTG 3 cut(s) 130, 223, 536
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 5 cut(s) 9, 122, 330, 415, 537
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 3 cut(s) 130, 223, 536
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 562
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.