pycom07g06140

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000817
Physical Location & Seq
Reverse (-)
5439575 .. 5447620
8046 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06140.1

Sequence Viewer

Length: 1293 bp
ATGGCAATTGATGAGAAGCAGAACGAAGCCACTACTTCTGCGTTAAATGAGTTGGCTCGCAGAAAAGGAGATCTTGAAGAAAATCTTAAACTAACTCATGAATTGAAGGCTGCAGACGATGAGAAGTATATCTTCATGTCATCCATGCTAGGGTTATTGGGTGAATATGGGATTTTGCCCCATGTCATAAATGCGTCTGCCATATCGAACAGTTTAAAGCATCTACATGATCAATTGCAGTGGAAGATTAGAACTTCCCATGATAAATTTAGACAATTAACCTCCGCAGTGGACAATCATGCTGAAACTGAATCTCATGGTAAAGATAGCCGTGGTTCTGCTATTTTGAATGGTCAATTTCCTGATAGATCCACAGTACTGATGGGACGGCAAGGCTTTGATCGTTATACTGATGAACAACATTTGGAGCCAACTGACACATTGCCGAAATATGTGACTGACATCCATGGGATGAAAATGCTAGTAAATAATGAAATTCCGCCTGAGTTCACAACCAATGCAGAGAGGGATATGGCTAGATTTATTAATAGAGATGATGCGAATGTGAGAGGCGGGAGTATGAACAATGGTACCTCATTTTCTCCTTACACCACTCAAGATGAGATTGCTCCCTCTGTTTCTGAAGTGGGCCCTGGAATAGAGAATTTTCAGATTATTGGTGATGCTATTCCGGGAGGCAAACTTCTTGGCTGTGGATATCCAGTACGTGGGACCTCACTTTGTGTGTTTCAGTGGGTTCGTCATCTTCAGGATGGAACTAGGGAGGTCATTGAAGGTGCCACAAATCCAGAATATATTGTCACTGCTGACGATGTTGATAAGATAATTGCTGTTGACTGCATACCGATGGATGAACAAGGCCGTCAGGGGGAGCTAGTGAGGCATTTTGCTAATGATCAGAACAAAATTAGATGTGACCCAGAGATGCAAATGGAGATTGACACACATATTTCTAGAGGACAAGCCAGTTTTAGTGTTCTACTACTGACGGACTCTTCTGAAGATTGGGAGCCAGCAACTCTGGTTCTGAGACGGTCAGGCTATCAAATCAGGATCAATACCACAGACTCTGTTTTATTTGACAAAACGTTCTCGAAGGAGTTATCGATCAAAGTTCCTTGTGGCTTCTCGACACAATTTGTGTTGACATATTCTGATGGATCTTCTCATCCTTTTACAACATACAGTATTCGGTTGCGTGATACTCTCGTGTTGACCATGAGAATACTCCAAAGCAAGGCACTGGATGACAGAAGGAAAGGAAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SCAB-IgPH

Protein Analysis

431

Amino Acids

48.2

Weight (kDa)

5.31

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IG_AIR9 PF23197 220 - 300 2.9e-11 AIR9 A9 domain
DUF7046 PF23080 341 - 427 5e-10 Domain of unknown function (DUF7046)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000817)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03560
fragaria_vesca FvH4_7g08080 FvH4_7g08080 FvH4_7g08080 FvH4_7g08080 FvH4_7g08080 FvH4_7g08080
malus_domestica MD07G1077700.v1.1
prunus_persica Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1 Prupe.2G098900_v2.0.a1
pyrus_communis pycom07g06140
rosa_chinensis RchiOBHm_Chr1g0341241
rosa_laevigata RLG00000029074
rosa_multiflora Rmu_sc0004092.1_g000040 Rmu_sc0042871.1_g000001
rosa_roxburghii Rroxscaffold_4G00311890
rosa_rugosa Rorug01G0158600.1 Rorug01G0158700.1 Rorug01G0158800.1 Rorug01G0158900.1 Rorug01G0159000.1
rosa_samantha Rh1AG172900 Rh1BG141000 Rh1CG161000 Rh1DG173300
rosa_wichuraiana Rw1G014430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 590
AccB1I GGYRCC 2 cut(s) 590, 797
AccB7I CCANNNNNTGG 1 cut(s) 728
AciI CCGC 3 cut(s) 285, 500, 573
AclI AACGTT 1 cut(s) 1109
AclWI GGATC 3 cut(s) 363, 1082, 1189
AcsI RAATTY 3 cut(s) 266, 495, 664
AcuI CTGAAG 3 cut(s) 663, 752, 1041
AdeI CACNNNGTG 1 cut(s) 743
AfaI GTAC 3 cut(s) 378, 592, 726
AfiI CCNNNNNNNGG 4 cut(s) 150, 728, 889, 1258
AgsI TTSAA 4 cut(s) 77, 106, 349, 794
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 1 cut(s) 895
AluI AGCT 1 cut(s) 895
Alw26I GTCTC 1 cut(s) 1045
AlwI GGATC 3 cut(s) 363, 1082, 1189
AlwNI CAGNNNCTG 1 cut(s) 1091
AoxI GGCC 2 cut(s) 649, 880
ApaI GGGCCC 1 cut(s) 653
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 3 cut(s) 266, 495, 664
AseI ATTAAT 1 cut(s) 546
Asp718I GGTACC 1 cut(s) 590
AspS9I GGNCC 3 cut(s) 649, 650, 732
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 2 cut(s) 173, 692
AvaII GGWCC 1 cut(s) 732
BaeGI GKGCMC 1 cut(s) 653
BaeI ACNNNNGTAYC 4 cut(s) 574, 607, 1215, 1248
BanI GGYRCC 2 cut(s) 590, 797
BanII GRGCYC 1 cut(s) 653
BauI CACGAG 1 cut(s) 1229
BbvI GCAGC 1 cut(s) 97
BccI CCATC 4 cut(s) 376, 767, 862, 1172
BceAI ACGGC 3 cut(s) 315, 404, 867
BciT130I CCWGG 1 cut(s) 654
BclI TGATCA 2 cut(s) 229, 916
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 1045
BfaI CTAG 6 cut(s) 149, 482, 537, 780, 896, 975
BfmI CTRYAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 70
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmcAI AGTACT 1 cut(s) 378
Bme1390I CCNGG 2 cut(s) 654, 693
Bme18I GGWCC 1 cut(s) 732
BmgT120I GGNCC 3 cut(s) 649, 650, 732
BmiI GGNNCC 6 cut(s) 429, 592, 651, 733, 799, 1032
BmrFI CCNGG 2 cut(s) 654, 693
BmsI GCATC 4 cut(s) 229, 547, 673, 936
BpuEI CTTGAG 1 cut(s) 600
BpuMI CCSGG 1 cut(s) 693
Bsa29I ATCGAT 1 cut(s) 1127
BsaAI YACGTR 1 cut(s) 728
BsaJI CCNNGG 3 cut(s) 331, 466, 652
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 728, 889, 1258
Bse1I ACTGG 3 cut(s) 722, 987, 1269
Bse3DI GCAATG 1 cut(s) 440
BseBI CCWGG 1 cut(s) 654
BseCI ATCGAT 1 cut(s) 1127
BseDI CCNNGG 3 cut(s) 331, 466, 652
BseGI GGATG 7 cut(s) 140, 462, 477, 778, 877, 1189, 1273
BseLI CCNNNNNNNGG 4 cut(s) 150, 728, 889, 1258
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 2 cut(s) 495, 1040
BseNI ACTGG 3 cut(s) 722, 987, 1269
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 1 cut(s) 97
BshFI GGCC 2 cut(s) 651, 882
BshNI GGYRCC 2 cut(s) 590, 797
BshVI ATCGAT 1 cut(s) 1127
BsiSI CCGG 1 cut(s) 692
BslFI GGGAC 2 cut(s) 399, 745
BslI CCNNNNNNNGG 4 cut(s) 150, 728, 889, 1258
BsmAI GTCTC 1 cut(s) 1045
BsmBI CGTCTC 1 cut(s) 1045
BsmFI GGGAC 2 cut(s) 399, 745
BsnI GGCC 2 cut(s) 651, 882
Bsp120I GGGCCC 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 8 cut(s) 70, 229, 368, 400, 916, 1074, 1128, 1181
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 3 cut(s) 285, 500, 573
BspANI GGCC 2 cut(s) 651, 882
BspCNI CTCAG 2 cut(s) 496, 1041
BspDI ATCGAT 1 cut(s) 1127
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 6 cut(s) 429, 592, 651, 733, 799, 1032
BspMAI CTGCAG 1 cut(s) 115
BspPI GGATC 3 cut(s) 363, 1082, 1189
BspQI GCTCTTC 1 cut(s) 1279
BspT107I GGYRCC 2 cut(s) 590, 797
BsrDI GCAATG 1 cut(s) 440
BsrI ACTGG 3 cut(s) 722, 987, 1269
BssECI CCNNGG 3 cut(s) 331, 466, 652
BssMI GATC 8 cut(s) 70, 229, 368, 400, 916, 1074, 1128, 1181
BssSI CACGAG 1 cut(s) 1229
BssT1I CCWWGG 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 1229
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 4 cut(s) 212, 376, 1056, 1208
Bst6I CTCTTC 2 cut(s) 1021, 1279
BstBAI YACGTR 1 cut(s) 728
BstC8I GCNNGC 2 cut(s) 58, 1035
BstDEI CTNAG 2 cut(s) 504, 1049
BstDSI CCRYGG 2 cut(s) 331, 466
BstF5I GGATG 7 cut(s) 140, 462, 477, 778, 877, 1189, 1273
BstKTI GATC 8 cut(s) 73, 232, 371, 403, 919, 1077, 1131, 1184
BstMAI GTCTC 1 cut(s) 1045
BstMBI GATC 8 cut(s) 70, 229, 368, 400, 916, 1074, 1128, 1181
BstMWI GCNNNNNNNGC 1 cut(s) 901
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 2 cut(s) 652, 691
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 1 cut(s) 97
BstX2I RGATCY 3 cut(s) 70, 368, 1181
BstYI RGATCY 3 cut(s) 70, 368, 1181
Bsu15I ATCGAT 1 cut(s) 1127
BsuRI GGCC 2 cut(s) 651, 882
BsuTUI ATCGAT 1 cut(s) 1127
BtgI CCRYGG 2 cut(s) 331, 466
BtsCI GGATG 7 cut(s) 140, 462, 477, 778, 877, 1189, 1273
BtsI GCAGTG 3 cut(s) 245, 294, 822
BtsIMutI CAGTG 5 cut(s) 245, 294, 758, 822, 1262
Cac8I GCNNGC 2 cut(s) 58, 1035
CaiI CAGNNNCTG 1 cut(s) 1091
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 3 cut(s) 649, 650, 732
ClaI ATCGAT 1 cut(s) 1127
CseI GACGC 1 cut(s) 183
Csp6I GTAC 3 cut(s) 377, 591, 725
CspCI CAANNNNNGTGG 2 cut(s) 221, 256
CviQI GTAC 3 cut(s) 377, 591, 725
DdeI CTNAG 2 cut(s) 504, 1049
DpnI GATC 8 cut(s) 72, 231, 370, 402, 918, 1076, 1130, 1183
DpnII GATC 8 cut(s) 70, 229, 368, 400, 916, 1074, 1128, 1181
DraI TTTAAA 1 cut(s) 216
DraIII CACNNNGTG 1 cut(s) 743
Eam1104I CTCTTC 2 cut(s) 1021, 1279
EarI CTCTTC 2 cut(s) 1021, 1279
EciI GGCGGA 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 653
Eco32I GATATC 1 cut(s) 719
Eco47I GGWCC 1 cut(s) 732
Eco57I CTGAAG 3 cut(s) 663, 752, 1041
EcoO109I RGGNCCY 2 cut(s) 650, 732
EcoRII CCWGG 1 cut(s) 652
EcoRV GATATC 1 cut(s) 719
EcoT14I CCWWGG 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 653
ErhI CCWWGG 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 1045
FalI AAGNNNNNCTT 6 cut(s) 57, 89, 69, 101, 116, 148
FaqI GGGAC 2 cut(s) 399, 745
FauI CCCGC 1 cut(s) 566
FbaI TGATCA 2 cut(s) 229, 916
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 7 cut(s) 127, 449, 484, 785, 884, 1176, 1280
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 6 cut(s) 149, 482, 537, 780, 896, 975
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 2 cut(s) 651, 882
HapII CCGG 1 cut(s) 692
HgaI GACGC 1 cut(s) 183
HincII GTYRAC 3 cut(s) 856, 1167, 1236
HindII GTYRAC 3 cut(s) 856, 1167, 1236
HinfI GANTC 3 cut(s) 311, 1013, 1088
HpaII CCGG 1 cut(s) 692
HphI GGTGA 2 cut(s) 173, 692
Hpy166II GTNNAC 5 cut(s) 292, 510, 856, 1167, 1236
Hpy188I TCNGA 6 cut(s) 643, 672, 921, 1021, 1050, 1177
Hpy8I GTNNAC 5 cut(s) 292, 510, 856, 1167, 1236
HpyAV CCTTC 4 cut(s) 100, 788, 1111, 1269
HpyCH4III ACNGT 4 cut(s) 212, 376, 1056, 1208
HpyCH4IV ACGT 2 cut(s) 727, 1109
HpyCH4V TGCA 5 cut(s) 113, 238, 521, 861, 949
HpyF10VI GCNNNNNNNGC 1 cut(s) 901
HpyF3I CTNAG 2 cut(s) 504, 1049
HpySE526I ACGT 2 cut(s) 727, 1109
KpnI GGTACC 1 cut(s) 594
Ksp22I TGATCA 2 cut(s) 229, 916
Kzo9I GATC 8 cut(s) 70, 229, 368, 400, 916, 1074, 1128, 1181
LguI GCTCTTC 1 cut(s) 1279
LmnI GCTCC 4 cut(s) 427, 634, 892, 1030
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 4 cut(s) 229, 547, 673, 936
MaeI CTAG 6 cut(s) 149, 482, 537, 780, 896, 975
MaeII ACGT 2 cut(s) 727, 1109
MaeIII GTNAC 3 cut(s) 454, 820, 935
MalI GATC 8 cut(s) 72, 231, 370, 402, 918, 1076, 1130, 1183
MboI GATC 8 cut(s) 70, 229, 368, 400, 916, 1074, 1128, 1181
MboII GAAGA 7 cut(s) 89, 124, 256, 758, 1008, 1034, 1176
MfeI CAATTG 2 cut(s) 6, 233
MflI RGATCY 3 cut(s) 70, 368, 1181
MhlI GDGCHC 1 cut(s) 653
MlyI GAGTC 2 cut(s) 1007, 1082
MseI TTAA 5 cut(s) 44, 87, 215, 278, 546
MslI CAYNNNNRTG 2 cut(s) 225, 866
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 2 cut(s) 654, 693
MunI CAATTG 2 cut(s) 6, 233
MvaI CCWGG 1 cut(s) 654
MwoI GCNNNNNNNGC 1 cut(s) 901
NciI CCSGG 1 cut(s) 693
NcoI CCATGG 1 cut(s) 466
NdeII GATC 8 cut(s) 70, 229, 368, 400, 916, 1074, 1128, 1181
NlaIV GGNNCC 6 cut(s) 429, 592, 651, 733, 799, 1032
NmuCI GTSAC 3 cut(s) 454, 820, 935
PagI TCATGA 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 1279
PfeI GAWTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 728
PfoI TCCNGGA 1 cut(s) 691
PkrI GCNGC 1 cut(s) 112
PleI GAGTC 2 cut(s) 1007, 1082
PpsI GAGTC 2 cut(s) 1007, 1082
Ppu21I YACGTR 1 cut(s) 728
PpuMI RGGWCCY 1 cut(s) 732
PshBI ATTAAT 1 cut(s) 546
Psp1406I AACGTT 1 cut(s) 1109
Psp5II RGGWCCY 1 cut(s) 732
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 6 cut(s) 429, 592, 651, 733, 799, 1032
PspOMI GGGCCC 1 cut(s) 649
PspPI GGNCC 3 cut(s) 649, 650, 732
PspPPI RGGWCCY 1 cut(s) 732
PstI CTGCAG 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 1091
PsuI RGATCY 3 cut(s) 70, 368, 1181
RsaI GTAC 3 cut(s) 378, 592, 726
RsaNI GTAC 3 cut(s) 377, 591, 725
RseI CAYNNNNRTG 2 cut(s) 225, 866
SapI GCTCTTC 1 cut(s) 1279
SaqAI TTAA 5 cut(s) 44, 87, 215, 278, 546
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 8 cut(s) 70, 229, 368, 400, 916, 1074, 1128, 1181
Sau96I GGNCC 3 cut(s) 649, 650, 732
ScaI AGTACT 1 cut(s) 378
SchI GAGTC 2 cut(s) 1007, 1082
ScrFI CCNGG 2 cut(s) 654, 693
SduI GDGCHC 1 cut(s) 653
SetI ASST 8 cut(s) 284, 596, 730, 737, 789, 799, 897, 1112
SfaNI GCATC 4 cut(s) 229, 547, 673, 936
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 732
SmiMI CAYNNNNRTG 2 cut(s) 225, 866
SmlI CTYRAG 1 cut(s) 615
SmoI CTYRAG 1 cut(s) 615
SsiI CCGC 3 cut(s) 285, 500, 573
SspMI CTAG 6 cut(s) 149, 482, 537, 780, 896, 975
StyD4I CCNGG 2 cut(s) 652, 691
StyI CCWWGG 1 cut(s) 466
TaaI ACNGT 4 cut(s) 212, 376, 1056, 1208
TaiI ACGT 2 cut(s) 730, 1112
TaqI TCGA 4 cut(s) 206, 1115, 1127, 1151
TatI WGTACW 1 cut(s) 376
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 5 cut(s) 44, 87, 215, 278, 546
Tru9I TTAA 5 cut(s) 44, 87, 215, 278, 546
TscAI CASTG 5 cut(s) 245, 294, 758, 829, 1269
TseFI GTSAC 3 cut(s) 454, 820, 935
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 3 cut(s) 454, 820, 935
TspDTI ATGAA 7 cut(s) 114, 124, 429, 488, 507, 596, 888
TspGWI ACGGA 1 cut(s) 1025
TspRI CASTG 5 cut(s) 245, 294, 758, 829, 1269
Van91I CCANNNNNTGG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 732
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 3 cut(s) 266, 495, 664
XbaI TCTAGA 1 cut(s) 974
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XspI CTAG 6 cut(s) 149, 482, 537, 780, 896, 975
ZrmI AGTACT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.