Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014794

Physical Location & Seq

Genomic Coordinates Forward (+)

8051270 .. 8054393

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08091.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGCCACGCCCTTCAGTCCCACCTTCTTCTACCTATCCCCAGCTCTCCCATAATGGTCAGCTCTCTCCTCTAGCTCCCTCTGTACGTTCAGCTCTAACATCAAAAGCACCAACTTGGAAGCTCTGTTGGGTGCAGAAGGTACAAAAACTTGTTGGCAGGAGGAGTGACACAAACTTCACACAAGAGTGTCGGGAGCAGCACAACCGGAGACAGGAGAGTCTCGATCGTGAGCTTCAGAGCAGGGTTCAGGAAATCAGTCTTCATGAGGCCTTGACTGCTGAGCTTGAGAGAGACTTCCCGAAATATAGTCCATACTACATCCGGGGACTCACGTATCCGAATCCAAAGGCTCTTGTACCTCCTAGTCCTGGACCAGGCGAAAGCCAACCATCTTCAGCTTCTACTTGGACATCTTTCTCAACTTTCGTGATAAAAGTGAGGGAGTGGAGCTCTTGTAGCCCTATGAAAGGCAAGCTTTACAGCAAGAAGCTTAAGGCTCAAGAAACCTACACTGCAGTGAAATCTAAGTGTCCTACACCAGTAACACCGAATAAACTGTCAGTTAATTCAGAAACATCGAATATGGTGCTTACCGAAGACATCATCCGCACTGTTGAAAACAAAGAGAAGCCATTGAGGGAGAAAGTACTTGGAACAGCAGCTACAGCTGCTACACCAAAAATTACCGAAAAGGTAATAGATGAAAAAGAGTATATATGGGCAGACAAGTACCAGCCTCAGTGCCTAGAAGATTTCATCTGTAATAGAGACAAAGCAACTCAGCTCAAGGTTCTGGCTAGAGGTAGAGGGTGTGGACATTTCATATTCGTAGGGCCTCCGGGTGTGGGCAAGAGAACTATGATCTGGGCTATGCTGAGAGAAGCTTTTGGACGTGACACTATAAATGCCACAGAGGAATTCAAGGCATTCGACTTAAAGGGTGAAGTAGTAGGCAGTATTGAAGTACATGTGAAGCAATCCCCTCAACATGTAGAAGTGAATCTCTCTGAACTGAAAGGTTATGAGAAGCATGTGATTGTTGAACTCATGAAGGAAAAACAGCACAAGATACCTAACAAATCAGCTTCGACATGCAGCCTTGACAACTGTCGAGCACTGATCTTATATGAAGCTGACAAGCTATCCACAGATGCCCTACTTTATATCAAATGGCTATTAGAAAGGTATAAAGGGCGTAATAAGGTCTTCTTCTGCTGTTCTGATGTGGCAAAGCTTCAGGCCATTAAGGCTATTTGTACTGTTGTTGAGCTTTTACCGCCTTCTAAGAATGAGATTGTTGAAGTTTTAAAGTTTATAGCCAAACAAGAAGGCATAGATATGCCACATAAACTGGCTGAAAGGTTTGCTGAGAATTCCAAAAACAGTTGCCGTCTGGCAATTCGTTCATTTGAGGCCACTTGGAAAAAGAGCTCTTATCCCTTTAAAGAAGATCAAGTAGTTTTGACAGGATGGGAGGATGAAATTGCAGATATTGGCAAGAATATGATCGAAGAGCAAAGCCCAAAACAGTATGTTCATTTGAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

No domains found.

Protein Analysis

517

Amino Acids

58.52

Weight (kDa)

9.07

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014794)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08091
malus_domestica	MD02G1230000.v1.1 MD07G1082400.v1.1
prunus_persica	Prupe.2G108000_v2.0.a1
pyrus_communis	pycom07g06570 pycom07g06580
rosa_chinensis	RchiOBHm_Chr1g0341191
rosa_laevigata	RLG00000029069
rosa_multiflora	Rmu_sc0004092.1_g000026 Rmu_sc0010892.1_g000010
rosa_roxburghii	Rroxscaffold_4G00311790
rosa_rugosa	Rorug01G0159600.1
rosa_samantha	Rh1AG173900 Rh1BG141800 Rh1CG161700 Rh1DG173800
rosa_wichuraiana	Rw1G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	216
AciI	CCGC	2 cut(s)	607, 1277
AcsI	RAATTY	2 cut(s)	917, 1372
AcuI	CTGAAG	3 cut(s)	218, 378, 1220
AfaI	GTAC	7 cut(s)	84, 141, 357, 648, 731, 966, 1258
AfiI	CCNNNNNNNGG	5 cut(s)	211, 368, 374, 467, 845
AflII	CTTAAG	1 cut(s)	491
AflIII	ACRYGT	2 cut(s)	967, 988
AgsI	TTSAA	6 cut(s)	617, 922, 962, 1043, 1301, 1543
AjiI	CACGTC	1 cut(s)	893
AjnI	CCWGG	2 cut(s)	367, 373
AleI	CACNNNNGTG	2 cut(s)	184, 515
Alw21I	GWGCWC	3 cut(s)	452, 1117, 1433
Alw26I	GTCTC	4 cut(s)	202, 224, 285, 762
AoxI	GGCC	4 cut(s)	267, 833, 1239, 1413
ApeKI	GCWGC	4 cut(s)	196, 659, 668, 1095
ApoI	RAATTY	2 cut(s)	917, 1372
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AspS9I	GGNCC	2 cut(s)	371, 833
AsuC2I	CCSGG	2 cut(s)	323, 840
AsuHPI	GGTGA	1 cut(s)	953
AvaII	GGWCC	1 cut(s)	371
BaeI	ACNNNNGTAYC	2 cut(s)	317, 350
BanII	GRGCYC	2 cut(s)	452, 1433
BbsI	GAAGAC	3 cut(s)	251, 603, 1198
Bbv12I	GWGCWC	3 cut(s)	452, 1117, 1433
BbvI	GCAGC	4 cut(s)	208, 655, 671, 1107
BccI	CCATC	2 cut(s)	397, 1464
BceAI	ACGGC	1 cut(s)	1374
BcgI	CGANNNNNNTGC	2 cut(s)	568, 602
BciT130I	CCWGG	2 cut(s)	369, 375
BciVI	GTATCC	1 cut(s)	345
BcnI	CCSGG	2 cut(s)	323, 840
BcoDI	GTCTC	4 cut(s)	202, 224, 285, 762
BfaI	CTAG	4 cut(s)	71, 363, 746, 798
BfmI	CTRYAG	2 cut(s)	513, 663
BfrI	CTTAAG	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	345
BglI	GCCNNNNNGGC	1 cut(s)	1247
BisI	GCNGC	4 cut(s)	197, 660, 669, 1096
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	4 cut(s)	198, 661, 670, 1097
BmcAI	AGTACT	1 cut(s)	648
Bme1390I	CCNGG	4 cut(s)	323, 369, 375, 840
Bme18I	GGWCC	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	893
BmgT120I	GGNCC	2 cut(s)	371, 833
BmrFI	CCNGG	4 cut(s)	323, 369, 375, 840
BmsI	GCATC	1 cut(s)	1141
BoxI	GACNNNNGTC	1 cut(s)	1107
BpiI	GAAGAC	3 cut(s)	251, 603, 1198
BplI	GAGNNNNNCTC	2 cut(s)	434, 466
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	3 cut(s)	305, 483, 770
BpuMI	CCSGG	2 cut(s)	323, 840
BsaAI	YACGTR	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	5 cut(s)	211, 368, 374, 467, 845
Bse1I	ACTGG	2 cut(s)	539, 1356
BseBI	CCWGG	2 cut(s)	369, 375
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	4 cut(s)	318, 603, 1475, 1483
BseLI	CCNNNNNNNGG	5 cut(s)	211, 368, 374, 467, 845
BseMII	CTCAG	5 cut(s)	270, 752, 794, 866, 1359
BseNI	ACTGG	2 cut(s)	539, 1356
BseRI	GAGGAG	2 cut(s)	57, 175
BseXI	GCAGC	4 cut(s)	208, 655, 671, 1107
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	4 cut(s)	269, 835, 1241, 1415
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	3 cut(s)	452, 1117, 1433
BsiSI	CCGG	3 cut(s)	205, 322, 839
BslFI	GGGAC	2 cut(s)	2, 339
BslI	CCNNNNNNNGG	5 cut(s)	211, 368, 374, 467, 845
BsmAI	GTCTC	4 cut(s)	202, 224, 285, 762
BsmFI	GGGAC	2 cut(s)	2, 339
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	4 cut(s)	269, 835, 1241, 1415
Bsp1286I	GDGCHC	3 cut(s)	452, 1117, 1433
Bsp143I	GATC	5 cut(s)	223, 861, 1119, 1450, 1506
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	2 cut(s)	607, 1277
BspANI	GGCC	4 cut(s)	269, 835, 1241, 1415
BspCNI	CTCAG	5 cut(s)	271, 751, 793, 867, 1360
BspHI	TCATGA	2 cut(s)	262, 1047
BspMAI	CTGCAG	1 cut(s)	517
BspQI	GCTCTTC	1 cut(s)	1506
BspTI	CTTAAG	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	539, 1356
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	5 cut(s)	223, 861, 1119, 1450, 1506
Bst2UI	CCWGG	2 cut(s)	369, 375
Bst4CI	ACNGT	6 cut(s)	558, 613, 1109, 1261, 1385, 1530
Bst6I	CTCTTC	1 cut(s)	1506
BstAFI	CTTAAG	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	7 cut(s)	279, 525, 738, 780, 875, 1284, 1368
BstENI	CCTNNNNNAGG	2 cut(s)	372, 465
BstF5I	GGATG	4 cut(s)	318, 603, 1475, 1483
BstKTI	GATC	5 cut(s)	226, 864, 1122, 1453, 1509
BstMAI	GTCTC	4 cut(s)	202, 224, 285, 762
BstMBI	GATC	5 cut(s)	223, 861, 1119, 1450, 1506
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	6 cut(s)	275, 456, 665, 668, 1247, 1276
BstNI	CCWGG	2 cut(s)	369, 375
BstNSI	RCATGY	4 cut(s)	971, 992, 1034, 1095
BstPAI	GACNNNNGTC	1 cut(s)	1107
BstSCI	CCNGG	4 cut(s)	321, 367, 373, 838
BstSFI	CTRYAG	2 cut(s)	513, 663
BstV1I	GCAGC	4 cut(s)	208, 655, 671, 1107
BstV2I	GAAGAC	3 cut(s)	251, 603, 1198
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	269, 835, 1241, 1415
BtrI	CACGTC	1 cut(s)	893
BtsCI	GGATG	4 cut(s)	318, 603, 1475, 1483
BtsI	GCAGTG	2 cut(s)	510, 522
BtsIMutI	CAGTG	5 cut(s)	510, 522, 609, 746, 1115
Cac8I	GCNNGC	1 cut(s)	473
CciI	TCATGA	2 cut(s)	262, 1047
Cfr13I	GGNCC	2 cut(s)	371, 833
Csp6I	GTAC	7 cut(s)	83, 140, 356, 647, 730, 965, 1257
CviAII	CATG	6 cut(s)	263, 968, 989, 1031, 1048, 1092
CviQI	GTAC	7 cut(s)	83, 140, 356, 647, 730, 965, 1257
DdeI	CTNAG	7 cut(s)	279, 525, 738, 780, 875, 1284, 1368
DpnI	GATC	5 cut(s)	225, 863, 1121, 1452, 1508
DpnII	GATC	5 cut(s)	223, 861, 1119, 1450, 1506
DraI	TTTAAA	2 cut(s)	1308, 1444
DrdI	GACNNNNNNGTC	1 cut(s)	216
DseDI	GACNNNNNNGTC	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	1506
EarI	CTCTTC	1 cut(s)	1506
Ecl136II	GAGCTC	2 cut(s)	450, 1431
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	2 cut(s)	452, 1433
Eco47I	GGWCC	1 cut(s)	371
Eco53kI	GAGCTC	2 cut(s)	450, 1431
Eco57I	CTGAAG	3 cut(s)	218, 378, 1220
EcoICRI	GAGCTC	2 cut(s)	450, 1431
EcoNI	CCTNNNNNAGG	2 cut(s)	372, 465
EcoO109I	RGGNCCY	1 cut(s)	833
EcoRI	GAATTC	2 cut(s)	917, 1372
EcoRII	CCWGG	2 cut(s)	367, 373
EcoT38I	GRGCYC	2 cut(s)	452, 1433
FaeI	CATG	6 cut(s)	266, 971, 992, 1034, 1051, 1095
FalI	AAGNNNNNCTT	4 cut(s)	459, 491, 1193, 1225
FaqI	GGGAC	2 cut(s)	2, 339
FatI	CATG	6 cut(s)	262, 967, 988, 1030, 1047, 1091
Fnu4HI	GCNGC	4 cut(s)	197, 660, 669, 1096
FokI	GGATG	4 cut(s)	305, 590, 1482, 1490
FriOI	GRGCYC	2 cut(s)	452, 1433
Fsp4HI	GCNGC	4 cut(s)	197, 660, 669, 1096
FspBI	CTAG	4 cut(s)	71, 363, 746, 798
GluI	GCNGC	4 cut(s)	197, 660, 669, 1096
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	4 cut(s)	269, 835, 1241, 1415
HapII	CCGG	3 cut(s)	205, 322, 839
Hin1II	CATG	6 cut(s)	266, 971, 992, 1034, 1051, 1095
HindIII	AAGCTT	4 cut(s)	473, 488, 882, 1232
HinfI	GANTC	4 cut(s)	217, 327, 340, 1000
HpaII	CCGG	3 cut(s)	205, 322, 839
HphI	GGTGA	1 cut(s)	953
Hpy166II	GTNNAC	1 cut(s)	815
Hpy188I	TCNGA	5 cut(s)	237, 339, 571, 1009, 1222
Hpy188III	TCNNGA	9 cut(s)	191, 221, 227, 248, 263, 298, 427, 500, 1048
Hpy8I	GTNNAC	1 cut(s)	815
HpyAV	CCTTC	6 cut(s)	21, 33, 130, 1045, 1290, 1322
HpyCH4III	ACNGT	6 cut(s)	558, 613, 1109, 1261, 1385, 1530
HpyCH4IV	ACGT	3 cut(s)	85, 332, 892
HpyCH4V	TGCA	4 cut(s)	133, 515, 1095, 1487
HpyF10VI	GCNNNNNNNGC	6 cut(s)	275, 456, 665, 668, 1247, 1276
HpyF3I	CTNAG	7 cut(s)	279, 525, 738, 780, 875, 1284, 1368
HpySE526I	ACGT	3 cut(s)	85, 332, 892
Hsp92II	CATG	6 cut(s)	266, 971, 992, 1034, 1051, 1095
Kzo9I	GATC	5 cut(s)	223, 861, 1119, 1450, 1506
LguI	GCTCTTC	1 cut(s)	1506
LmnI	GCTCC	3 cut(s)	79, 193, 447
Lsp1109I	GCAGC	4 cut(s)	208, 655, 671, 1107
LweI	GCATC	1 cut(s)	1141
MaeI	CTAG	4 cut(s)	71, 363, 746, 798
MaeII	ACGT	3 cut(s)	85, 332, 892
MaeIII	GTNAC	3 cut(s)	164, 541, 893
MalI	GATC	5 cut(s)	225, 863, 1121, 1452, 1508
MboI	GATC	5 cut(s)	223, 861, 1119, 1450, 1506
MboII	GAAGA	9 cut(s)	18, 251, 384, 608, 761, 1198, 1201, 1460, 1523
MhlI	GDGCHC	3 cut(s)	452, 1117, 1433
MluCI	AATT	6 cut(s)	565, 681, 917, 1372, 1398, 1482
MlyI	GAGTC	2 cut(s)	226, 321
MseI	TTAA	6 cut(s)	492, 564, 935, 1245, 1307, 1443
MslI	CAYNNNNRTG	3 cut(s)	184, 515, 1337
MspA1I	CMGCKG	1 cut(s)	668
MspCI	CTTAAG	1 cut(s)	491
MspI	CCGG	3 cut(s)	205, 322, 839
MspR9I	CCNGG	4 cut(s)	323, 369, 375, 840
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	2 cut(s)	369, 375
MwoI	GCNNNNNNNGC	6 cut(s)	275, 456, 665, 668, 1247, 1276
NciI	CCSGG	2 cut(s)	323, 840
NdeII	GATC	5 cut(s)	223, 861, 1119, 1450, 1506
NlaIII	CATG	6 cut(s)	266, 971, 992, 1034, 1051, 1095
NmuCI	GTSAC	2 cut(s)	164, 893
NspI	RCATGY	4 cut(s)	971, 992, 1034, 1095
OliI	CACNNNNGTG	2 cut(s)	184, 515
PagI	TCATGA	2 cut(s)	262, 1047
PceI	AGGCCT	1 cut(s)	269
PciI	ACATGT	2 cut(s)	967, 988
PciSI	GCTCTTC	1 cut(s)	1506
PctI	GAATGC	1 cut(s)	926
PfeI	GAWTC	2 cut(s)	340, 1000
PfoI	TCCNGGA	1 cut(s)	367
PkrI	GCNGC	4 cut(s)	198, 661, 670, 1097
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	2 cut(s)	225, 321
PpsI	GAGTC	2 cut(s)	225, 321
Ppu21I	YACGTR	1 cut(s)	333
PscI	ACATGT	2 cut(s)	967, 988
PshAI	GACNNNNGTC	1 cut(s)	1107
Psp124BI	GAGCTC	2 cut(s)	452, 1433
Psp6I	CCWGG	2 cut(s)	367, 373
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	367, 373
PspPI	GGNCC	2 cut(s)	371, 833
PsrI	GAACNNNNNNTAC	2 cut(s)	646, 678
PstI	CTGCAG	1 cut(s)	517
PvuI	CGATCG	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	7 cut(s)	84, 141, 357, 648, 731, 966, 1258
RsaNI	GTAC	7 cut(s)	83, 140, 356, 647, 730, 965, 1257
RseI	CAYNNNNRTG	3 cut(s)	184, 515, 1337
SacI	GAGCTC	2 cut(s)	452, 1433
SapI	GCTCTTC	1 cut(s)	1506
SaqAI	TTAA	6 cut(s)	492, 564, 935, 1245, 1307, 1443
SatI	GCNGC	4 cut(s)	197, 660, 669, 1096
Sau3AI	GATC	5 cut(s)	223, 861, 1119, 1450, 1506
Sau96I	GGNCC	2 cut(s)	371, 833
ScaI	AGTACT	1 cut(s)	648
SchI	GAGTC	2 cut(s)	226, 321
ScrFI	CCNGG	4 cut(s)	323, 369, 375, 840
SduI	GDGCHC	3 cut(s)	452, 1117, 1433
SfaNI	GCATC	1 cut(s)	1141
SfcI	CTRYAG	2 cut(s)	513, 663
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	3 cut(s)	184, 515, 1337
SmlI	CTYRAG	4 cut(s)	284, 491, 498, 785
SmoI	CTYRAG	4 cut(s)	284, 491, 498, 785
Sse9I	AATT	6 cut(s)	565, 681, 917, 1372, 1398, 1482
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	607, 1277
SspMI	CTAG	4 cut(s)	71, 363, 746, 798
SstI	GAGCTC	2 cut(s)	452, 1433
StuI	AGGCCT	1 cut(s)	269
StyD4I	CCNGG	4 cut(s)	321, 367, 373, 838
TaaI	ACNGT	6 cut(s)	558, 613, 1109, 1261, 1385, 1530
TaiI	ACGT	3 cut(s)	88, 335, 895
TaqI	TCGA	6 cut(s)	222, 578, 930, 1088, 1111, 1509
TasI	AATT	6 cut(s)	565, 681, 917, 1372, 1398, 1482
TatI	WGTACW	3 cut(s)	646, 964, 1256
TfiI	GAWTC	2 cut(s)	340, 1000
Tru1I	TTAA	6 cut(s)	492, 564, 935, 1245, 1307, 1443
Tru9I	TTAA	6 cut(s)	492, 564, 935, 1245, 1307, 1443
TscAI	CASTG	5 cut(s)	517, 522, 616, 746, 1122
TseFI	GTSAC	2 cut(s)	164, 893
TseI	GCWGC	4 cut(s)	196, 659, 668, 1095
Tsp45I	GTSAC	2 cut(s)	164, 893
TspRI	CASTG	5 cut(s)	517, 522, 616, 746, 1122
Vha464I	CTTAAG	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	371
XagI	CCTNNNNNAGG	2 cut(s)	372, 465
XapI	RAATTY	2 cut(s)	917, 1372
XceI	RCATGY	4 cut(s)	971, 992, 1034, 1095
XspI	CTAG	4 cut(s)	71, 363, 746, 798
ZrmI	AGTACT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.