MD02G1230000.v1.1

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014794
Physical Location & Seq
Forward (+)
27584105 .. 27587390
3286 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1230000.v1.1.491

Sequence Viewer

Length: 1860 bp
ATGTCATCCGATACGAAACAATTGAAGTTGCAGACGCAGCTCTGCCGCACAATGCCAAGCCCGTCAATCATCTCCCGCTCTTCGTCCTTCCCACGGCTCAAAAAAGCATGGCCTTCGCAGTACACTCTCCCGGAAAACCTCCCTCCTGCGAACCACTCTGCATGCACAGCTCCTGCGTCGAAGATCACTTCTGCCAAGCTTTCCTGGAGAAGGAAGTTCAGAAAACTTATCAGGAAGAGACGAAATTCGAACTTCACAGAGCAAAGCCTCGAGGCTCACAATAACACGCACATTGTGAAAGATGTGATCAAGCTTCACAAGAGAGTAGGGCAAGTTAGTCTTCAAGACTATTATAACTTTGAGACTGATGAGGAGAGAAGCTCAAAATATAGTCCCTATTACATTAGGGGACTCACGTATCCGAACTTCATTGTCCCTAAGCATCCAATTAGTACTCCCGGCCGCGAAAGCCATACCTCTCATGGTTCTTGGAAATCAATCTCCACCTTCTTTTCGGGGTTCAAAATGCGAGAGTGGGGCTCTTGCATTGGTTCGAAAAGCAAGAGCAACAAGCTTAGGCCGGAAATGTACACCGCAATGAAACCCGTCAAACCACCTGTAGTTAACTCCTCATCATCGACAATTACAGAGCTTTCTTTGGTGGAGGAGGAGAGCAGAGAGAGGAAGAAGGTCAGGACGAGTAGCAACGAATCTAACAAAGAGAAGCCACTGAGGAAGAGAGTGCGATCAGGAGGAACAGCAGCAGCTGATGCTGATGCTGATGCGCCGAGAAATGATCAAATTAAGGTGATGAGTGATGCCGAGAAGGAGTATGCATGGGCAGACAAGTACCAGCCTCTGTGCTTAGAAGATTTCATATGCAATAGAGACAAAGCAACTCAGCTGCAGGCTTTGGCCAAAGAAGGAGGATGTGGACATTTCATATTTGAAGGACCGCCGGGGGTGGGGAAGAGAACTATGATCTGGGCTATGCTTCGAGAGGTTTTTGGACGCGACACAATACATGCCAGAGAAGAGTTCAAGGCATTCAACCTCAAGGGTGAAATGGTAGGTAGTATAGAAGTACATGTAAAGCAATCTCCTCAACATGTAGAAGTGAATCTCTCTGAACTGAAGGGCTATGAAAAGCATGTGATTGTCGAACTCATGAAGGAAACACAGGACAATACGCTGAACAAATCTATGCCGTGCAGCCTTGACAACTGCCGAGACAAGCTATCAACCGATGCCCTGCTGTATATAAAGTGGCTTTTAGAAAGGTATAAAGGTCGTAATAAGATCTTCTTCTGCTGCTCTGATGTCTCAAAGCTTCAGGCAATCAAATCGCTTTGCACTGTCTTTGAGCTTTCACCTCCTTCGAAGAATGAGATTGTTGAAGTTCTAAAATTCATATCTAAAAAAGAAGGCATAGATTTGCCACATGAATTGGCTGAAAGGTTTGCCCAAAATTCTAAGAATAATATCCGTCTAGCCATTCGTTCATTCGAGGCTACTTGGAAGAAAAGGCTATATATAATCCGCGGAAAGCTTCAGAATCTTATAGTTCATGGCGTATCTCCCGAATTCATTTTCAAATCCCTAGTAACAGAGCTGAAGAAGTATGTGGACGGCAGCCTGCAGGATCGAGTTGACAGCATGTACGACGAATACAATAGGAACGACGAAAATATGTTTGAGAGTGACAAAGCACTGGCACTCAGTCGGCACGATCACGGGGAAACGGGTAAAAGGCCCGCCGAACAATCTATAAAGCACGTTCAGCAGTTCTTGAGAATTGAAGATGCACGGAAATGTTGTATTGTCATATTGTGTGGCAACATAAGATGCTTATATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
No domains found.

Protein Analysis

620

Amino Acids

70.99

Weight (kDa)

9.41

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCF1-5-like_lid PF21960 466 - 504 3.7e-06 RCF1/5-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014794)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08091
malus_domestica MD02G1230000.v1.1 MD07G1082400.v1.1
prunus_persica Prupe.2G108000_v2.0.a1
pyrus_communis pycom07g06570 pycom07g06580
rosa_chinensis RchiOBHm_Chr1g0341191
rosa_laevigata RLG00000029069
rosa_multiflora Rmu_sc0004092.1_g000026 Rmu_sc0010892.1_g000010
rosa_roxburghii Rroxscaffold_4G00311790
rosa_rugosa Rorug01G0159600.1
rosa_samantha Rh1AG173900 Rh1BG141800 Rh1CG161700 Rh1DG173800
rosa_wichuraiana Rw1G014440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AbsI CCTCGAGG 1 cut(s) 269
AccBSI CCGCTC 1 cut(s) 78
AccII CGCG 3 cut(s) 465, 1014, 1542
AciI CCGC 8 cut(s) 46, 76, 463, 594, 956, 1540, 1542, 1755
AclWI GGATC 1 cut(s) 1650
AcoI YGGCCR 2 cut(s) 460, 915
AcsI RAATTY 4 cut(s) 244, 1406, 1468, 1583
AcuI CTGAAG 4 cut(s) 1154, 1316, 1535, 1634
AdeI CACNNNGTG 1 cut(s) 295
AfaI GTAC 6 cut(s) 122, 454, 590, 851, 1086, 1661
AfiI CCNNNNNNNGG 3 cut(s) 93, 210, 965
AflIII ACRYGT 2 cut(s) 1087, 1108
AgsI TTSAA 9 cut(s) 25, 344, 523, 950, 1042, 1051, 1397, 1594, 1799
AjnI CCWGG 1 cut(s) 203
Alw26I GTCTC 5 cut(s) 232, 356, 882, 1224, 1327
AlwI GGATC 1 cut(s) 1650
AlwNI CAGNNNCTG 3 cut(s) 173, 767, 859
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 5 cut(s) 110, 460, 578, 915, 1751
ApeKI GCWGC 7 cut(s) 37, 761, 764, 904, 1212, 1311, 1632
ApoI RAATTY 4 cut(s) 244, 1406, 1468, 1583
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 2 cut(s) 953, 1752
AsuC2I CCSGG 3 cut(s) 131, 459, 960
AsuHPI GGTGA 3 cut(s) 820, 1073, 1362
AsuII TTCGAA 3 cut(s) 248, 554, 1379
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 953
BaeI ACNNNNGTAYC 2 cut(s) 401, 434
BalI TGGCCA 1 cut(s) 917
BanII GRGCYC 1 cut(s) 542
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 7 cut(s) 49, 773, 776, 891, 1224, 1298, 1644
BceAI ACGGC 3 cut(s) 110, 1192, 1645
BcgI CGANNNNNNTGC 4 cut(s) 96, 130, 1326, 1360
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 429
BclI TGATCA 2 cut(s) 306, 796
BcnI CCSGG 3 cut(s) 131, 459, 960
BcoDI GTCTC 5 cut(s) 232, 356, 882, 1224, 1327
BfaI CTAG 3 cut(s) 1490, 1601, 1858
BfmI CTRYAG 3 cut(s) 618, 905, 1637
BfuI GTATCC 1 cut(s) 429
BglII AGATCT 1 cut(s) 1299
BisI GCNGC 9 cut(s) 38, 46, 463, 762, 765, 905, 1213, 1312, 1633
BlsI GCNGC 9 cut(s) 39, 47, 464, 763, 766, 906, 1214, 1313, 1634
BmcAI AGTACT 1 cut(s) 454
Bme1390I CCNGG 4 cut(s) 131, 205, 459, 960
Bme18I GGWCC 1 cut(s) 953
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 953, 1752
BmrFI CCNGG 4 cut(s) 131, 205, 459, 960
BmsI GCATC 8 cut(s) 451, 760, 766, 772, 808, 1237, 1792, 1835
BpiI GAAGAC 1 cut(s) 332
BplI GAGNNNNNCTC 4 cut(s) 365, 397, 524, 556
BpmI CTGGAG 1 cut(s) 226
Bpu10I CCTNAGC 2 cut(s) 438, 575
Bpu14I TTCGAA 3 cut(s) 248, 554, 1379
BpuEI CTTGAG 2 cut(s) 1040, 1810
BpuMI CCSGG 3 cut(s) 131, 459, 960
BsaAI YACGTR 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 92, 959, 1540
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 210, 965
Bse1I ACTGG 1 cut(s) 1716
Bse3DI GCAATG 1 cut(s) 603
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 3 cut(s) 92, 959, 1540
BseGI GGATG 3 cut(s) 5, 442, 935
BseLI CCNNNNNNNGG 3 cut(s) 93, 210, 965
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 3 cut(s) 722, 914, 1732
BseNI ACTGG 1 cut(s) 1716
BseRI GAGGAG 5 cut(s) 386, 619, 680, 683, 1092
BseX3I CGGCCG 1 cut(s) 460
BseXI GCAGC 7 cut(s) 49, 773, 776, 891, 1224, 1298, 1644
BsgI GTGCAG 1 cut(s) 1231
Bsh1236I CGCG 3 cut(s) 465, 1014, 1542
Bsh1285I CGRYCG 1 cut(s) 463
BshFI GGCC 5 cut(s) 112, 462, 580, 917, 1753
BsiEI CGRYCG 1 cut(s) 463
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 4 cut(s) 131, 459, 581, 959
BslFI GGGAC 3 cut(s) 378, 419, 423
BslI CCNNNNNNNGG 3 cut(s) 93, 210, 965
BsmAI GTCTC 5 cut(s) 232, 356, 882, 1224, 1327
BsmBI CGTCTC 1 cut(s) 232
BsmFI GGGAC 3 cut(s) 378, 419, 423
BsmI GAATGC 1 cut(s) 1046
BsnI GGCC 5 cut(s) 112, 462, 580, 917, 1753
BsoBI CYCGRG 1 cut(s) 269
Bsp119I TTCGAA 3 cut(s) 248, 554, 1379
Bsp1286I GDGCHC 1 cut(s) 542
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 8 cut(s) 183, 306, 746, 796, 981, 1299, 1642, 1729
BspACI CCGC 8 cut(s) 46, 76, 463, 594, 956, 1540, 1542, 1755
BspANI GGCC 5 cut(s) 112, 462, 580, 917, 1753
BspCNI CTCAG 3 cut(s) 723, 913, 1731
BspFNI CGCG 3 cut(s) 465, 1014, 1542
BspHI TCATGA 1 cut(s) 1167
BspMAI CTGCAG 2 cut(s) 909, 1641
BspPI GGATC 1 cut(s) 1650
BspQI GCTCTTC 1 cut(s) 85
BspT104I TTCGAA 3 cut(s) 248, 554, 1379
BsrBI CCGCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 603
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 1 cut(s) 1716
BssECI CCNNGG 3 cut(s) 92, 959, 1540
BssMI GATC 8 cut(s) 183, 306, 746, 796, 981, 1299, 1642, 1729
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 1357
Bst6I CTCTTC 5 cut(s) 85, 230, 731, 965, 1029
BstAPI GCANNNNNTGC 1 cut(s) 770
BstAUI TGTACA 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 417
BstBI TTCGAA 3 cut(s) 248, 554, 1379
BstC8I GCNNGC 4 cut(s) 163, 909, 1637, 1755
BstDEI CTNAG 7 cut(s) 438, 575, 731, 865, 900, 1473, 1718
BstDSI CCRYGG 2 cut(s) 92, 1540
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 3 cut(s) 5, 442, 935
BstFNI CGCG 3 cut(s) 465, 1014, 1542
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 8 cut(s) 186, 309, 749, 799, 984, 1302, 1645, 1732
BstMAI GTCTC 5 cut(s) 232, 356, 882, 1224, 1327
BstMBI GATC 8 cut(s) 183, 306, 746, 796, 981, 1299, 1642, 1729
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 5 cut(s) 37, 167, 468, 770, 1780
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 6 cut(s) 165, 1028, 1091, 1112, 1154, 1660
BstSCI CCNGG 4 cut(s) 129, 203, 457, 958
BstSFI CTRYAG 3 cut(s) 618, 905, 1637
BstUI CGCG 3 cut(s) 465, 1014, 1542
BstV1I GCAGC 7 cut(s) 49, 773, 776, 891, 1224, 1298, 1644
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 1299
BstYI RGATCY 1 cut(s) 1299
BstZI CGGCCG 1 cut(s) 460
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 5 cut(s) 112, 462, 580, 917, 1753
BtgI CCRYGG 2 cut(s) 92, 1540
BtsCI GGATG 3 cut(s) 5, 442, 935
BtsIMutI CAGTG 3 cut(s) 728, 1353, 1709
Cac8I GCNNGC 4 cut(s) 163, 909, 1637, 1755
CaiI CAGNNNCTG 3 cut(s) 173, 767, 859
CciI TCATGA 1 cut(s) 1167
CfoI GCGC 1 cut(s) 787
Cfr13I GGNCC 2 cut(s) 953, 1752
Cfr42I CCGCGG 1 cut(s) 1543
CseI GACGC 3 cut(s) 43, 165, 1020
Csp6I GTAC 6 cut(s) 121, 453, 589, 850, 1085, 1660
CspCI CAANNNNNGTGG 2 cut(s) 1428, 1463
CviQI GTAC 6 cut(s) 121, 453, 589, 850, 1085, 1660
DdeI CTNAG 7 cut(s) 438, 575, 731, 865, 900, 1473, 1718
DpnI GATC 8 cut(s) 185, 308, 748, 798, 983, 1301, 1644, 1731
DpnII GATC 8 cut(s) 183, 306, 746, 796, 981, 1299, 1642, 1729
DraIII CACNNNGTG 1 cut(s) 295
EaeI YGGCCR 2 cut(s) 460, 915
EagI CGGCCG 1 cut(s) 460
Eam1104I CTCTTC 5 cut(s) 85, 230, 731, 965, 1029
EarI CTCTTC 5 cut(s) 85, 230, 731, 965, 1029
EclXI CGGCCG 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 953
Eco52I CGGCCG 1 cut(s) 460
Eco57I CTGAAG 4 cut(s) 1154, 1316, 1535, 1634
Eco88I CYCGRG 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 1583
EcoRII CCWGG 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 838
EcoT38I GRGCYC 1 cut(s) 542
Esp3I CGTCTC 1 cut(s) 232
FalI AAGNNNNNCTT 4 cut(s) 324, 356, 1289, 1321
FaqI GGGAC 3 cut(s) 378, 419, 423
FauI CCCGC 2 cut(s) 83, 1762
FauNDI CATATG 1 cut(s) 878
FbaI TGATCA 2 cut(s) 306, 796
Fnu4HI GCNGC 9 cut(s) 38, 46, 463, 762, 765, 905, 1213, 1312, 1633
FokI GGATG 2 cut(s) 429, 942
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 9 cut(s) 38, 46, 463, 762, 765, 905, 1213, 1312, 1633
FspBI CTAG 3 cut(s) 1490, 1601, 1858
GlaI GCGC 1 cut(s) 786
GluI GCNGC 9 cut(s) 38, 46, 463, 762, 765, 905, 1213, 1312, 1633
GsuI CTGGAG 1 cut(s) 226
HaeIII GGCC 5 cut(s) 112, 462, 580, 917, 1753
HapII CCGG 4 cut(s) 131, 459, 581, 959
HgaI GACGC 3 cut(s) 43, 165, 1020
HhaI GCGC 1 cut(s) 787
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HincII GTYRAC 2 cut(s) 625, 1651
HindII GTYRAC 2 cut(s) 625, 1651
HindIII AAGCTT 5 cut(s) 197, 311, 572, 1328, 1547
HinfI GANTC 4 cut(s) 411, 710, 1120, 1555
HpaI GTTAAC 1 cut(s) 625
HpaII CCGG 4 cut(s) 131, 459, 581, 959
HphI GGTGA 3 cut(s) 820, 1073, 1362
Hpy166II GTNNAC 6 cut(s) 123, 591, 625, 935, 1627, 1651
Hpy188I TCNGA 6 cut(s) 10, 221, 423, 1129, 1318, 1554
Hpy188III TCNNGA 8 cut(s) 232, 344, 694, 750, 998, 1168, 1580, 1789
Hpy8I GTNNAC 6 cut(s) 123, 591, 625, 935, 1627, 1651
Hpy99I CGWCG 3 cut(s) 181, 1667, 1685
HpyCH4III ACNGT 1 cut(s) 1357
HpyCH4IV ACGT 2 cut(s) 416, 1776
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 167, 468, 770, 1780
HpyF3I CTNAG 7 cut(s) 438, 575, 731, 865, 900, 1473, 1718
HpySE526I ACGT 2 cut(s) 416, 1776
HspAI GCGC 1 cut(s) 785
Ksp22I TGATCA 2 cut(s) 306, 796
KspAI GTTAAC 1 cut(s) 625
KspI CCGCGG 1 cut(s) 1543
Kzo9I GATC 8 cut(s) 183, 306, 746, 796, 981, 1299, 1642, 1729
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 7 cut(s) 49, 773, 776, 891, 1224, 1298, 1644
LweI GCATC 8 cut(s) 451, 760, 766, 772, 808, 1237, 1792, 1835
MaeI CTAG 3 cut(s) 1490, 1601, 1858
MaeII ACGT 2 cut(s) 416, 1776
MaeIII GTNAC 2 cut(s) 1603, 1700
MalI GATC 8 cut(s) 185, 308, 748, 798, 983, 1301, 1644, 1731
MbiI CCGCTC 1 cut(s) 78
MboI GATC 8 cut(s) 183, 306, 746, 796, 981, 1299, 1642, 1729
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 1 cut(s) 1299
MhlI GDGCHC 1 cut(s) 542
MlsI TGGCCA 1 cut(s) 917
MluNI TGGCCA 1 cut(s) 917
MlyI GAGTC 1 cut(s) 405
Mox20I TGGCCA 1 cut(s) 917
Mph1103I ATGCAT 1 cut(s) 838
MscI TGGCCA 1 cut(s) 917
MseI TTAA 2 cut(s) 624, 804
MslI CAYNNNNRTG 2 cut(s) 596, 1810
Msp20I TGGCCA 1 cut(s) 917
MspA1I CMGCKG 3 cut(s) 767, 904, 1542
MspI CCGG 4 cut(s) 131, 459, 581, 959
MspR9I CCNGG 4 cut(s) 131, 205, 459, 960
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 1046
MvaI CCWGG 1 cut(s) 205
MvnI CGCG 3 cut(s) 465, 1014, 1542
MwoI GCNNNNNNNGC 5 cut(s) 37, 167, 468, 770, 1780
NciI CCSGG 3 cut(s) 131, 459, 960
NdeI CATATG 1 cut(s) 878
NdeII GATC 8 cut(s) 183, 306, 746, 796, 981, 1299, 1642, 1729
NmeAIII GCCGAG 3 cut(s) 813, 847, 1253
NmuCI GTSAC 1 cut(s) 1700
NsiI ATGCAT 1 cut(s) 838
NspI RCATGY 6 cut(s) 165, 1028, 1091, 1112, 1154, 1660
NspV TTCGAA 3 cut(s) 248, 554, 1379
PaeI GCATGC 1 cut(s) 165
PaeR7I CTCGAG 1 cut(s) 269
PagI TCATGA 1 cut(s) 1167
PciI ACATGT 2 cut(s) 1087, 1108
PciSI GCTCTTC 1 cut(s) 85
PctI GAATGC 1 cut(s) 1046
PfeI GAWTC 3 cut(s) 710, 1120, 1555
PfoI TCCNGGA 2 cut(s) 129, 203
PkrI GCNGC 9 cut(s) 39, 47, 464, 763, 766, 906, 1214, 1313, 1634
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
Ppu21I YACGTR 1 cut(s) 417
PscI ACATGT 2 cut(s) 1087, 1108
PsiI TTATAA 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 2 cut(s) 953, 1752
PspXI VCTCGAGB 1 cut(s) 269
PstI CTGCAG 2 cut(s) 909, 1641
PstNI CAGNNNCTG 3 cut(s) 173, 767, 859
PsuI RGATCY 1 cut(s) 1299
PvuII CAGCTG 2 cut(s) 767, 904
RsaI GTAC 6 cut(s) 122, 454, 590, 851, 1086, 1661
RsaNI GTAC 6 cut(s) 121, 453, 589, 850, 1085, 1660
RseI CAYNNNNRTG 2 cut(s) 596, 1810
SacII CCGCGG 1 cut(s) 1543
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 624, 804
SatI GCNGC 9 cut(s) 38, 46, 463, 762, 765, 905, 1213, 1312, 1633
Sau3AI GATC 8 cut(s) 183, 306, 746, 796, 981, 1299, 1642, 1729
Sau96I GGNCC 2 cut(s) 953, 1752
SbfI CCTGCAGG 1 cut(s) 1641
ScaI AGTACT 1 cut(s) 454
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 4 cut(s) 131, 205, 459, 960
SdaI CCTGCAGG 1 cut(s) 1641
SduI GDGCHC 1 cut(s) 542
SfaNI GCATC 8 cut(s) 451, 760, 766, 772, 808, 1237, 1792, 1835
SfcI CTRYAG 3 cut(s) 618, 905, 1637
Sfr274I CTCGAG 1 cut(s) 269
Sfr303I CCGCGG 1 cut(s) 1543
SfuI TTCGAA 3 cut(s) 248, 554, 1379
SgrBI CCGCGG 1 cut(s) 1543
SinI GGWCC 1 cut(s) 953
SlaI CTCGAG 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 596, 1810
SmlI CTYRAG 3 cut(s) 269, 1055, 1789
SmoI CTYRAG 3 cut(s) 269, 1055, 1789
SphI GCATGC 1 cut(s) 165
Sse8387I CCTGCAGG 1 cut(s) 1641
SsiI CCGC 8 cut(s) 46, 76, 463, 594, 956, 1540, 1542, 1755
SspMI CTAG 3 cut(s) 1490, 1601, 1858
StyD4I CCNGG 4 cut(s) 129, 203, 457, 958
TaaI ACNGT 1 cut(s) 1357
TaiI ACGT 2 cut(s) 419, 1779
TatI WGTACW 4 cut(s) 120, 452, 588, 1084
TauI GCSGC 2 cut(s) 48, 465
TfiI GAWTC 3 cut(s) 710, 1120, 1555
Tru1I TTAA 2 cut(s) 624, 804
Tru9I TTAA 2 cut(s) 624, 804
TscAI CASTG 3 cut(s) 735, 1360, 1716
TseFI GTSAC 1 cut(s) 1700
TseI GCWGC 7 cut(s) 37, 761, 764, 904, 1212, 1311, 1632
Tsp45I GTSAC 1 cut(s) 1700
TspGWI ACGGA 2 cut(s) 1475, 1822
TspRI CASTG 3 cut(s) 735, 1360, 1716
VpaK11BI GGWCC 1 cut(s) 953
XagI CCTNNNNNAGG 1 cut(s) 208
XapI RAATTY 4 cut(s) 244, 1406, 1468, 1583
XceI RCATGY 6 cut(s) 165, 1028, 1091, 1112, 1154, 1660
XcmI CCANNNNNNNNNTGG 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 269
XspI CTAG 3 cut(s) 1490, 1601, 1858
ZrmI AGTACT 1 cut(s) 454
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.