Rh1CG161700

Replication factor C subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014794
Physical Location & Seq
Forward (+)
35820958 .. 35828071
7114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG161700.1

Sequence Viewer

Length: 1851 bp
ATGCCAAACCCTTCAATCCCACGTTCTTCTTCCAATCCCCTACTCTCCCACACTGATATGCTCCCTCCTGCGGCTCGCACTGTGTGTTCAGCTCCCATATCAAAAGCACTAACTTCGAAGCTCTCATGGGGGCAGAAGATACAGAGATTTATCGGGAGGAGGAGTGACTCGGACTTGACACAAGAGAGTCTGGAGCACCACAACCGGAGACAGGAGAGTTTTGATCGTGAGCTTCAGAAGAGGGTACAGGAAATTAGTCTTCATGAGGCCTTCAATGCCGAGCTTGAGACCAGATATAGTCCATACTACATTCGAGGACTCACATATCCGGCAGCTCTTGTACCTCCTAGTCCTGGACCAGGCGAAAGCGAACCATCTTCTGGTGCTACTTGGACCTCTATCTCAACTTTCTTGTTTAAAATGAGGGAGTGGAGCTCTTGCCGTGTCAGCTCTAAGAAAGGTCAGCTTTACAGCAAGAAGCTTAAGGCTCAAGCAACCTACACTGCAGTGAAATCTAGGCGTCCTCAACCAATAACACCTAATGAACTGTCAGTTAATTCAGAAACATCGAATATGGTGGTAACCGAAGACATCATCAGCACTGTTGAAAACGAAGAGAAGCCATTGAGGGAGAGAGTACTTGAAGCAGTAGCTACAGCTGCTACACCAACAAATACCGAAAGGGAGTACATATGGGCAGACAAGTACCAGCCCCAGTGCTTAGAAGATTTCATATGTAATAGAGACAAAGCAACTCAGCTACAGGTTTTGGCCAGAGGTGGAGGGTGTGGGCATTTCATATTCGAAGGACCTCCAGGCGTGGGGAAGAGAACTATGATCTGGGCTATGCTGAGAGAGGCTTTTGGACGTGACACTATACATGCTAGAGAGGAATCCAAGGCATTCGACTTGAAGGGTGAAGTGGTAGGTAGTATTAATGTACAAGTGAAGCAATCCCCTCAACATGTAGAAGTAAATCTCTCTGAACTGAAAGGTTATGAGAAGCATGTGATTGTTGAACTGATGAAGGAAACACAGTACAACATACCTAACAAATCAGCTTTGCCGTGCAGCCTTGACAACTGCCGAGCACTGATCTTATATGAGGCAGACAAGCTATCCACAGATGCCCTACTTTATATTAAGTGGCTATTAGAAAGGTATAAAGGGTGTAATAAGGTCTTCTTCTGCTGTTCTGATGTGGCAAAGCTTCAGGCCATCAAGACAATTTGTACTGTCGTTGAGCTTTTGCCGCCTTCAAAGAATGAGATTGTCGAAGTTTTAAAATTTATAGCCAAAAAAGAAGGCATAGATTTGCCACATCAACTGGCTGAAAGGTTCGCTGAAAATTCCAAAAACAGTCTCCGTCTAGCAATTCGTTCATTCGAGGCCACTTGGAAAAAAGGTTCTTATCCCTTCAAAGAAGATCAAGTAATTTTGACAGGATGGGAGGATGAAATTGCAGATATTGGCAAGAATATGATCGAAGAGCAAAGCCCAAAACAGCTATACATTATCCGTGGAAAGCTTCAAAATCTGATATCACATGGTGTATCTCCTGAATTCATTTTCAAATCCCTAGTAGCAGAGCTGAAGAAGTATTTGGACGAGAACATGCAGGTTCAAGTTGAAAGCATGTATGATGAATACAGTAGGAATGACGAAACTATGTTTGAGAGTGACAAAGCACTGACACTTACTCGACATCAAGAAATGGGTAAAAGGCTCAATGATCCATCCAGGAAGAATATACAACGGTTCTTGAGGATTGAGGAGTTTATAGCCAAATTTATGAGCTGCTACAAGGGTTGTACGAATACCAAGACTTATCATCATGATACTCCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 map03030 map03420 map03430
Pfam Domains
Protein Families
No domains found.

Protein Analysis

616

Amino Acids

70.2

Weight (kDa)

8.25

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCF1-5-like_lid PF21960 426 - 464 6.7e-06 RCF1/5-like, AAA+ ATPase lid domain
RFC_C PF22534 483 - 545 7.5e-06 Replication factor C subunit 3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014794)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08091
malus_domestica MD02G1230000.v1.1 MD07G1082400.v1.1
prunus_persica Prupe.2G108000_v2.0.a1
pyrus_communis pycom07g06570 pycom07g06580
rosa_chinensis RchiOBHm_Chr1g0341191
rosa_laevigata RLG00000029069
rosa_multiflora Rmu_sc0004092.1_g000026 Rmu_sc0010892.1_g000010
rosa_roxburghii Rroxscaffold_4G00311790
rosa_rugosa Rorug01G0159600.1
rosa_samantha Rh1AG173900 Rh1BG141800 Rh1CG161700 Rh1DG173800
rosa_wichuraiana Rw1G014440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1609
AccB7I CCANNNNNTGG 1 cut(s) 380
AciI CCGC 2 cut(s) 71, 1253
AclWI GGATC 1 cut(s) 1727
AcoI YGGCCR 1 cut(s) 771
AcsI RAATTY 4 cut(s) 1286, 1348, 1562, 1787
AcuI CTGAAG 3 cut(s) 218, 1196, 1613
AcyI GRCGYC 1 cut(s) 520
AdeI CACNNNGTG 2 cut(s) 84, 1550
AfaI GTAC 9 cut(s) 246, 342, 639, 689, 707, 942, 1040, 1234, 1813
AfiI CCNNNNNNNGG 6 cut(s) 70, 211, 353, 359, 380, 821
AflII CTTAAG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 964
AjiI CACGTC 1 cut(s) 869
AjnI CCWGG 4 cut(s) 352, 358, 814, 1739
AjuI GAANNNNNNNTTGG 2 cut(s) 1586, 1618
AleI CACNNNNGTG 1 cut(s) 506
AloI GAACNNNNNNTCC 2 cut(s) 1390, 1422
Alw21I GWGCWC 3 cut(s) 198, 437, 1093
Alw26I GTCTC 4 cut(s) 202, 281, 738, 1367
AlwI GGATC 1 cut(s) 1727
AoxI GGCC 4 cut(s) 267, 771, 1215, 1389
ApeKI GCWGC 4 cut(s) 332, 659, 1071, 1797
ApoI RAATTY 4 cut(s) 1286, 1348, 1562, 1787
AseI ATTAAT 1 cut(s) 936
AspS9I GGNCC 3 cut(s) 356, 393, 809
AsuHPI GGTGA 1 cut(s) 929
AsuII TTCGAA 2 cut(s) 116, 804
AvaII GGWCC 3 cut(s) 356, 393, 809
BalI TGGCCA 1 cut(s) 773
BanII GRGCYC 1 cut(s) 437
BbsI GAAGAC 3 cut(s) 251, 594, 1174
Bbv12I GWGCWC 3 cut(s) 198, 437, 1093
BbvI GCAGC 4 cut(s) 344, 646, 1083, 1784
BccI CCATC 4 cut(s) 382, 1226, 1440, 1744
BceAI ACGGC 2 cut(s) 426, 1051
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciT130I CCWGG 4 cut(s) 354, 360, 816, 1741
BcoDI GTCTC 4 cut(s) 202, 281, 738, 1367
BfaI CTAG 5 cut(s) 348, 516, 885, 1370, 1580
BfmI CTRYAG 3 cut(s) 504, 654, 761
BfrI CTTAAG 1 cut(s) 482
BfuAI ACCTGC 1 cut(s) 1609
BisI GCNGC 6 cut(s) 72, 333, 660, 1072, 1253, 1798
BlsI GCNGC 6 cut(s) 73, 334, 661, 1073, 1254, 1799
BmcAI AGTACT 1 cut(s) 639
Bme1390I CCNGG 4 cut(s) 354, 360, 816, 1741
Bme18I GGWCC 3 cut(s) 356, 393, 809
BmgBI CACGTC 1 cut(s) 869
BmgT120I GGNCC 3 cut(s) 356, 393, 809
BmrFI CCNGG 4 cut(s) 354, 360, 816, 1741
BmrI ACTGGG 1 cut(s) 709
BmsI GCATC 1 cut(s) 1117
BmuI ACTGGG 1 cut(s) 709
BpiI GAAGAC 3 cut(s) 251, 594, 1174
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 2 cut(s) 212, 798
Bpu14I TTCGAA 2 cut(s) 116, 804
BpuEI CTTGAG 3 cut(s) 305, 474, 1783
BsaHI GRCGYC 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 897, 1519
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 211, 353, 359, 380, 821
Bse1I ACTGG 2 cut(s) 715, 1332
BseBI CCWGG 4 cut(s) 354, 360, 816, 1741
BseDI CCNNGG 2 cut(s) 897, 1519
BseGI GGATG 3 cut(s) 1451, 1459, 1736
BseLI CCNNNNNNNGG 6 cut(s) 70, 211, 353, 359, 380, 821
BseMII CTCAG 2 cut(s) 770, 842
BseNI ACTGG 2 cut(s) 715, 1332
BseRI GAGGAG 3 cut(s) 172, 175, 1787
BseXI GCAGC 4 cut(s) 344, 646, 1083, 1784
BsgI GTGCAG 1 cut(s) 1090
BshFI GGCC 4 cut(s) 269, 773, 1217, 1391
BsiHKAI GWGCWC 3 cut(s) 198, 437, 1093
BsiSI CCGG 2 cut(s) 205, 329
BslI CCNNNNNNNGG 6 cut(s) 70, 211, 353, 359, 380, 821
BsmAI GTCTC 4 cut(s) 202, 281, 738, 1367
BsmI GAATGC 1 cut(s) 902
BsnI GGCC 4 cut(s) 269, 773, 1217, 1391
Bso31I GGTCTC 1 cut(s) 281
Bsp119I TTCGAA 2 cut(s) 116, 804
Bsp1286I GDGCHC 3 cut(s) 198, 437, 1093
Bsp1407I TGTACA 1 cut(s) 940
Bsp143I GATC 6 cut(s) 223, 837, 1095, 1426, 1482, 1732
BspACI CCGC 2 cut(s) 71, 1253
BspANI GGCC 4 cut(s) 269, 773, 1217, 1391
BspCNI CTCAG 2 cut(s) 769, 843
BspHI TCATGA 2 cut(s) 262, 1834
BspMAI CTGCAG 1 cut(s) 508
BspMI ACCTGC 1 cut(s) 1609
BspPI GGATC 1 cut(s) 1727
BspQI GCTCTTC 1 cut(s) 1482
BspT104I TTCGAA 2 cut(s) 116, 804
BspTI CTTAAG 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 940
BsrI ACTGG 2 cut(s) 715, 1332
BssECI CCNNGG 2 cut(s) 897, 1519
BssMI GATC 6 cut(s) 223, 837, 1095, 1426, 1482, 1732
BssNI GRCGYC 1 cut(s) 520
BssT1I CCWWGG 1 cut(s) 897
Bst2UI CCWGG 4 cut(s) 354, 360, 816, 1741
Bst4CI ACNGT 8 cut(s) 82, 549, 604, 1038, 1237, 1361, 1652, 1758
Bst6I CTCTTC 4 cut(s) 233, 609, 821, 1482
BstACI GRCGYC 1 cut(s) 520
BstAFI CTTAAG 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 940
BstBI TTCGAA 2 cut(s) 116, 804
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 4 cut(s) 453, 721, 756, 851
BstDSI CCRYGG 1 cut(s) 1519
BstEII GGTNACC 1 cut(s) 580
BstENI CCTNNNNNAGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 1451, 1459, 1736
BstKTI GATC 6 cut(s) 226, 840, 1098, 1429, 1485, 1735
BstMAI GTCTC 4 cut(s) 202, 281, 738, 1367
BstMBI GATC 6 cut(s) 223, 837, 1095, 1426, 1482, 1732
BstMWI GCNNNNNNNGC 4 cut(s) 275, 447, 659, 1252
BstNI CCWGG 4 cut(s) 354, 360, 816, 1741
BstNSI RCATGY 5 cut(s) 884, 968, 1010, 1618, 1639
BstPI GGTNACC 1 cut(s) 580
BstSCI CCNGG 4 cut(s) 352, 358, 814, 1739
BstSFI CTRYAG 3 cut(s) 504, 654, 761
BstV1I GCAGC 4 cut(s) 344, 646, 1083, 1784
BstV2I GAAGAC 3 cut(s) 251, 594, 1174
BsuRI GGCC 4 cut(s) 269, 773, 1217, 1391
BtgI CCRYGG 1 cut(s) 1519
BtrI CACGTC 1 cut(s) 869
BtsCI GGATG 3 cut(s) 1451, 1459, 1736
BtsI GCAGTG 2 cut(s) 501, 513
BtsIMutI CAGTG 8 cut(s) 51, 78, 501, 513, 600, 722, 1091, 1688
BveI ACCTGC 1 cut(s) 1609
Cac8I GCNNGC 1 cut(s) 76
CciI TCATGA 2 cut(s) 262, 1834
Cfr13I GGNCC 3 cut(s) 356, 393, 809
CseI GACGC 1 cut(s) 509
Csp6I GTAC 9 cut(s) 245, 341, 638, 688, 706, 941, 1039, 1233, 1812
CviAII CATG 9 cut(s) 126, 263, 881, 965, 1007, 1547, 1615, 1636, 1835
CviQI GTAC 9 cut(s) 245, 341, 638, 688, 706, 941, 1039, 1233, 1812
DdeI CTNAG 4 cut(s) 453, 721, 756, 851
DpnI GATC 6 cut(s) 225, 839, 1097, 1428, 1484, 1734
DpnII GATC 6 cut(s) 223, 837, 1095, 1426, 1482, 1732
DraI TTTAAA 2 cut(s) 418, 1284
DraIII CACNNNGTG 2 cut(s) 84, 1550
EaeI YGGCCR 1 cut(s) 771
Eam1104I CTCTTC 4 cut(s) 233, 609, 821, 1482
EarI CTCTTC 4 cut(s) 233, 609, 821, 1482
Ecl136II GAGCTC 1 cut(s) 435
Eco130I CCWWGG 1 cut(s) 897
Eco147I AGGCCT 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 437
Eco31I GGTCTC 1 cut(s) 281
Eco32I GATATC 1 cut(s) 1542
Eco47I GGWCC 3 cut(s) 356, 393, 809
Eco53kI GAGCTC 1 cut(s) 435
Eco57I CTGAAG 3 cut(s) 218, 1196, 1613
Eco91I GGTNACC 1 cut(s) 580
EcoICRI GAGCTC 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 809
EcoO65I GGTNACC 1 cut(s) 580
EcoRI GAATTC 1 cut(s) 1562
EcoRII CCWGG 4 cut(s) 352, 358, 814, 1739
EcoRV GATATC 1 cut(s) 1542
EcoT14I CCWWGG 1 cut(s) 897
EcoT38I GRGCYC 1 cut(s) 437
ErhI CCWWGG 1 cut(s) 897
FaeI CATG 9 cut(s) 129, 266, 884, 968, 1010, 1550, 1618, 1639, 1838
FalI AAGNNNNNCTT 4 cut(s) 450, 482, 1169, 1201
FatI CATG 9 cut(s) 125, 262, 880, 964, 1006, 1546, 1614, 1635, 1834
FauNDI CATATG 2 cut(s) 692, 734
Fnu4HI GCNGC 6 cut(s) 72, 333, 660, 1072, 1253, 1798
FokI GGATG 3 cut(s) 1458, 1466, 1723
FriOI GRGCYC 1 cut(s) 437
Fsp4HI GCNGC 6 cut(s) 72, 333, 660, 1072, 1253, 1798
FspBI CTAG 5 cut(s) 348, 516, 885, 1370, 1580
GluI GCNGC 6 cut(s) 72, 333, 660, 1072, 1253, 1798
GsuI CTGGAG 2 cut(s) 212, 798
HaeIII GGCC 4 cut(s) 269, 773, 1217, 1391
HapII CCGG 2 cut(s) 205, 329
HgaI GACGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 520
Hin1II CATG 9 cut(s) 129, 266, 884, 968, 1010, 1550, 1618, 1639, 1838
HindIII AAGCTT 3 cut(s) 479, 1208, 1526
HinfI GANTC 4 cut(s) 167, 187, 318, 893
HpaII CCGG 2 cut(s) 205, 329
HphI GGTGA 1 cut(s) 929
Hpy188I TCNGA 6 cut(s) 172, 237, 562, 985, 1198, 1539
Hpy188III TCNNGA 9 cut(s) 154, 191, 227, 263, 1222, 1559, 1709, 1762, 1835
HpyAV CCTTC 8 cut(s) 21, 280, 800, 907, 1021, 1266, 1298, 1426
HpyCH4III ACNGT 8 cut(s) 82, 549, 604, 1038, 1237, 1361, 1652, 1758
HpyCH4IV ACGT 2 cut(s) 22, 868
HpyCH4V TGCA 4 cut(s) 506, 1071, 1463, 1618
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 447, 659, 1252
HpyF3I CTNAG 4 cut(s) 453, 721, 756, 851
HpySE526I ACGT 2 cut(s) 22, 868
Hsp92I GRCGYC 1 cut(s) 520
Hsp92II CATG 9 cut(s) 129, 266, 884, 968, 1010, 1550, 1618, 1639, 1838
Kzo9I GATC 6 cut(s) 223, 837, 1095, 1426, 1482, 1732
LguI GCTCTTC 1 cut(s) 1482
LmnI GCTCC 4 cut(s) 66, 97, 193, 432
Lsp1109I GCAGC 4 cut(s) 344, 646, 1083, 1784
LweI GCATC 1 cut(s) 1117
MaeI CTAG 5 cut(s) 348, 516, 885, 1370, 1580
MaeII ACGT 2 cut(s) 22, 868
MaeIII GTNAC 4 cut(s) 164, 580, 869, 1679
MalI GATC 6 cut(s) 225, 839, 1097, 1428, 1484, 1734
MboI GATC 6 cut(s) 223, 837, 1095, 1426, 1482, 1732
MhlI GDGCHC 3 cut(s) 198, 437, 1093
MlsI TGGCCA 1 cut(s) 773
MluNI TGGCCA 1 cut(s) 773
MlyI GAGTC 3 cut(s) 161, 196, 312
Mox20I TGGCCA 1 cut(s) 773
MscI TGGCCA 1 cut(s) 773
MseI TTAA 6 cut(s) 417, 483, 555, 936, 1143, 1283
MslI CAYNNNNRTG 2 cut(s) 56, 506
Msp20I TGGCCA 1 cut(s) 773
MspA1I CMGCKG 1 cut(s) 659
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 2 cut(s) 205, 329
MspR9I CCNGG 4 cut(s) 354, 360, 816, 1741
Mva1269I GAATGC 1 cut(s) 902
MvaI CCWGG 4 cut(s) 354, 360, 816, 1741
MwoI GCNNNNNNNGC 4 cut(s) 275, 447, 659, 1252
NdeI CATATG 2 cut(s) 692, 734
NdeII GATC 6 cut(s) 223, 837, 1095, 1426, 1482, 1732
NlaIII CATG 9 cut(s) 129, 266, 884, 968, 1010, 1550, 1618, 1639, 1838
NmeAIII GCCGAG 2 cut(s) 304, 1112
NmuCI GTSAC 3 cut(s) 164, 869, 1679
NspI RCATGY 5 cut(s) 884, 968, 1010, 1618, 1639
NspV TTCGAA 2 cut(s) 116, 804
OliI CACNNNNGTG 1 cut(s) 506
PagI TCATGA 2 cut(s) 262, 1834
PceI AGGCCT 1 cut(s) 269
PciI ACATGT 1 cut(s) 964
PciSI GCTCTTC 1 cut(s) 1482
PctI GAATGC 1 cut(s) 902
PfeI GAWTC 1 cut(s) 893
PflMI CCANNNNNTGG 1 cut(s) 380
PfoI TCCNGGA 2 cut(s) 352, 1739
PkrI GCNGC 6 cut(s) 73, 334, 661, 1073, 1254, 1799
PleI GAGTC 3 cut(s) 161, 195, 312
PpsI GAGTC 3 cut(s) 161, 195, 312
PpuMI RGGWCCY 1 cut(s) 809
PscI ACATGT 1 cut(s) 964
PshBI ATTAAT 1 cut(s) 936
Psp124BI GAGCTC 1 cut(s) 437
Psp5II RGGWCCY 1 cut(s) 809
Psp6I CCWGG 4 cut(s) 352, 358, 814, 1739
PspEI GGTNACC 1 cut(s) 580
PspGI CCWGG 4 cut(s) 352, 358, 814, 1739
PspPI GGNCC 3 cut(s) 356, 393, 809
PspPPI RGGWCCY 1 cut(s) 809
PstI CTGCAG 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 9 cut(s) 246, 342, 639, 689, 707, 942, 1040, 1234, 1813
RsaNI GTAC 9 cut(s) 245, 341, 638, 688, 706, 941, 1039, 1233, 1812
RseI CAYNNNNRTG 2 cut(s) 56, 506
SacI GAGCTC 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 1482
SaqAI TTAA 6 cut(s) 417, 483, 555, 936, 1143, 1283
SatI GCNGC 6 cut(s) 72, 333, 660, 1072, 1253, 1798
Sau3AI GATC 6 cut(s) 223, 837, 1095, 1426, 1482, 1732
Sau96I GGNCC 3 cut(s) 356, 393, 809
ScaI AGTACT 1 cut(s) 639
SchI GAGTC 3 cut(s) 161, 196, 312
ScrFI CCNGG 4 cut(s) 354, 360, 816, 1741
SduI GDGCHC 3 cut(s) 198, 437, 1093
SfaNI GCATC 1 cut(s) 1117
SfcI CTRYAG 3 cut(s) 504, 654, 761
SfuI TTCGAA 2 cut(s) 116, 804
SinI GGWCC 3 cut(s) 356, 393, 809
SmiMI CAYNNNNRTG 2 cut(s) 56, 506
SmlI CTYRAG 4 cut(s) 284, 482, 489, 1762
SmoI CTYRAG 4 cut(s) 284, 482, 489, 1762
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 2 cut(s) 71, 1253
SspMI CTAG 5 cut(s) 348, 516, 885, 1370, 1580
SstI GAGCTC 1 cut(s) 437
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 4 cut(s) 352, 358, 814, 1739
StyI CCWWGG 1 cut(s) 897
TaaI ACNGT 8 cut(s) 82, 549, 604, 1038, 1237, 1361, 1652, 1758
TaiI ACGT 2 cut(s) 25, 871
TaqI TCGA 9 cut(s) 116, 313, 569, 804, 906, 1275, 1386, 1485, 1702
TatI WGTACW 5 cut(s) 637, 687, 940, 1038, 1232
TauI GCSGC 2 cut(s) 74, 1255
TfiI GAWTC 1 cut(s) 893
Tru1I TTAA 6 cut(s) 417, 483, 555, 936, 1143, 1283
Tru9I TTAA 6 cut(s) 417, 483, 555, 936, 1143, 1283
TscAI CASTG 8 cut(s) 58, 85, 508, 513, 607, 722, 1098, 1695
TseFI GTSAC 3 cut(s) 164, 869, 1679
TseI GCWGC 4 cut(s) 332, 659, 1071, 1797
Tsp45I GTSAC 3 cut(s) 164, 869, 1679
TspDTI ATGAA 9 cut(s) 251, 558, 721, 787, 1040, 1371, 1470, 1555, 1659
TspGWI ACGGA 2 cut(s) 1355, 1508
TspRI CASTG 8 cut(s) 58, 85, 508, 513, 607, 722, 1098, 1695
Van91I CCANNNNNTGG 1 cut(s) 380
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 3 cut(s) 356, 393, 809
VspI ATTAAT 1 cut(s) 936
XagI CCTNNNNNAGG 1 cut(s) 357
XapI RAATTY 4 cut(s) 1286, 1348, 1562, 1787
XceI RCATGY 5 cut(s) 884, 968, 1010, 1618, 1639
XspI CTAG 5 cut(s) 348, 516, 885, 1370, 1580
ZrmI AGTACT 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.