FvH4_7g08660

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016659
Physical Location & Seq
Reverse (-)
8497862 .. 8501526
3665 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08660.t1

Sequence Viewer

Length: 1299 bp
ATGTTACTGCACAAACCCACTTCCAAAACCCTCAGAAAGCTACTCTTCCCCTATCAAAATCCAATCTTTTCTTGTTTGTACCAACCCCAAAACCCTGCTTACATTTACACCCAGAAAGCCAACTATGTTAATGTCTACATGAAATGGAAGAAAGACTCTTACTTTGACACCATTGAGCACATTGACAAGTCCATAGTGCTAAAACCCATCATAAACCTCAAGAACTGTATTACTGAGGATCCCAATGGGTGTATCCCAATCTATCGAGTGTCCAAAAGGGGTTTTGCATTAGATGTACCCATGAAGGTTGCCAAGTTTTTGAGGAAATACCCGTCAATTTTTGAGGAGTTTTCTGGGGAATACAATTATCCCTGGTTCAAATTGACCCCAGAAGCAGCTGAGATTGATAGGGAGGAGAAGAGGGTTTATGAGGATTGTAGGGAGGATTTGAGGGATAGGCTGAAAAAGTTGATCTTGATGAGTAAAGAGAAGGTTTTGCCTTTGAAAATTATTCAGGGGATGGAGTGGTATTTGGGTTTGCCTGATGATTTTTTGCATTACACGGAAAAGAATCTGGATCGGTCTTTTCGGTTTGTGACGATGGAAGATGGGTTAGAGGGATTAGCTGTTGACAGTGGTGAAAAGGTCTTGTCTGTGGTGCAAAGGAATGCAATGAAAAATGGGGTGTATTCTGGAGGCTCAATGGAGGCAGTTGAGTTTCCGTGTTTCCCTTCCAATGGTCTGAGGTTGAGACACAAGATTAAAGATTGGTTAGAGGAGTTTCAGAAACTTCCCTATGTTTCACCTTATGAGGATTCTTCACACTTGCAGCCAGATTCTGATGAATGTGAGAAACGAGTTGTGGGGCTTCTTCATGAGTTGCTTAGTCTATTTGTTGAGCATTCAGCAGAGAGGAAGAAGCTCTTTTGTCTTAAGAAGTATATGGGACTTCCACAGAAAGTGCACAGAGCATTTGAGAGACATCCCGAGATTTTCTATTTGTCTCATAAGAACAAGACTTGTACGGCAATTCTTAAAGAGGCTTACTGTGATGAGTCTGCTATTGAGAAGCATCCACTGTTGGCAGTGAGAAAGAAGTATATTAGGTTGATGAGGGAGTCAGCAGTGATCTTGAAGAATAGGAGAGTGAATGGCCGTTTAGCTGGTGGTGGGAATATGGAGCTGGATTTGGATTTGGAACATAAATGTGAGGACAGAGGAGGTGGAGAGAATACGAAGGTGGACTTGGATTTGGAGTCTGAGAATGTAGACAATAGAGATGGAGAGTGTTCTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

433

Amino Acids

50.4

Weight (kDa)

7.89

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 50 - 374 4.2e-108 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39120
fragaria_vesca FvH4_7g08660
malus_domestica MD01G1105000.v1.1
prunus_persica Prupe.2G210300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343651
rosa_laevigata RLG00000028956
rosa_multiflora Rmu_sc0000021.1_g000005 Rmu_sc0007600.1_g000003
rosa_roxburghii Rroxscaffold_4G00310400
rosa_rugosa Rorug01G0168100 Rorug01G0168200
rosa_samantha Rh1AG184100 Rh1CG171000
rosa_wichuraiana Rw1G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 135, 1269
AclWI GGATC 3 cut(s) 233, 246, 585
AcoI YGGCCR 1 cut(s) 1153
AfaI GTAC 3 cut(s) 80, 297, 1024
AfiI CCNNNNNNNGG 1 cut(s) 737
AflII CTTAAG 1 cut(s) 932
AgsI TTSAA 3 cut(s) 379, 505, 1135
AjnI CCWGG 1 cut(s) 371
AjuI GAANNNNNNNTTGG 2 cut(s) 1229, 1261
AluBI AGCT 6 cut(s) 40, 398, 626, 922, 1163, 1183
AluI AGCT 6 cut(s) 40, 398, 626, 922, 1163, 1183
Alw21I GWGCWC 2 cut(s) 180, 966
Alw26I GTCTC 3 cut(s) 745, 973, 1008
Alw44I GTGCAC 1 cut(s) 962
AlwI GGATC 3 cut(s) 233, 246, 585
AlwNI CAGNNNCTG 1 cut(s) 839
Ama87I CYCGRG 1 cut(s) 986
AoxI GGCC 1 cut(s) 1153
ApaLI GTGCAC 1 cut(s) 962
ApeKI GCWGC 2 cut(s) 395, 829
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsuHPI GGTGA 2 cut(s) 650, 795
AvaI CYCGRG 1 cut(s) 986
BaeGI GKGCMC 1 cut(s) 966
BamHI GGATCC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 180, 966
BbvI GCAGC 2 cut(s) 407, 841
BccI CCATC 5 cut(s) 215, 514, 595, 602, 1274
BceAI ACGGC 2 cut(s) 1041, 1140
BciT130I CCWGG 1 cut(s) 373
BciVI GTATCC 1 cut(s) 263
BcoDI GTCTC 3 cut(s) 745, 973, 1008
BfrI CTTAAG 1 cut(s) 932
BfuI GTATCC 1 cut(s) 263
BisI GCNGC 2 cut(s) 396, 830
BlsI GCNGC 2 cut(s) 397, 831
Bme1390I CCNGG 1 cut(s) 373
BmeT110I CYCGRG 1 cut(s) 986
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 1081
BpmI CTGGAG 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 737
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 3 cut(s) 525, 982, 1072
BseLI CCNNNNNNNGG 1 cut(s) 737
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 5 cut(s) 46, 225, 390, 734, 1251
BseRI GAGGAG 4 cut(s) 359, 428, 791, 1233
BseSI GKGCMC 1 cut(s) 966
BseXI GCAGC 2 cut(s) 407, 841
BshFI GGCC 1 cut(s) 1155
BsiHKAI GWGCWC 2 cut(s) 180, 966
BsiHKCI CYCGRG 1 cut(s) 986
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 1 cut(s) 737
BsmAI GTCTC 3 cut(s) 745, 973, 1008
BsmFI GGGAC 1 cut(s) 960
BsmI GAATGC 2 cut(s) 673, 901
BsnI GGCC 1 cut(s) 1155
BsoBI CYCGRG 1 cut(s) 986
Bsp1286I GDGCHC 2 cut(s) 180, 966
Bsp143I GATC 4 cut(s) 238, 471, 577, 1128
BspANI GGCC 1 cut(s) 1155
BspCNI CTCAG 5 cut(s) 45, 226, 391, 735, 1252
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 3 cut(s) 233, 246, 585
BspTI CTTAAG 1 cut(s) 932
BsrDI GCAATG 1 cut(s) 678
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 4 cut(s) 238, 471, 577, 1128
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 4 cut(s) 227, 635, 1049, 1080
Bst6I CTCTTC 2 cut(s) 50, 413
BstAFI CTTAAG 1 cut(s) 932
BstDEI CTNAG 7 cut(s) 32, 234, 399, 743, 884, 1260, 1293
BstF5I GGATG 3 cut(s) 525, 982, 1072
BstKTI GATC 4 cut(s) 241, 474, 580, 1131
BstMAI GTCTC 3 cut(s) 745, 973, 1008
BstMBI GATC 4 cut(s) 238, 471, 577, 1128
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 371
BstSLI GKGCMC 1 cut(s) 966
BstV1I GCAGC 2 cut(s) 407, 841
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 1155
BtsCI GGATG 3 cut(s) 525, 982, 1072
BtsI GCAGTG 2 cut(s) 1092, 1131
BtsIMutI CAGTG 4 cut(s) 640, 1076, 1092, 1131
CaiI CAGNNNCTG 1 cut(s) 839
CciI TCATGA 1 cut(s) 874
Csp6I GTAC 3 cut(s) 79, 296, 1023
CviAII CATG 3 cut(s) 139, 301, 875
CviQI GTAC 3 cut(s) 79, 296, 1023
DdeI CTNAG 7 cut(s) 32, 234, 399, 743, 884, 1260, 1293
DpnI GATC 4 cut(s) 240, 473, 579, 1130
DpnII GATC 4 cut(s) 238, 471, 577, 1128
EaeI YGGCCR 1 cut(s) 1153
Eam1104I CTCTTC 2 cut(s) 50, 413
EarI CTCTTC 2 cut(s) 50, 413
Eco88I CYCGRG 1 cut(s) 986
EcoRII CCWGG 1 cut(s) 371
FaeI CATG 3 cut(s) 142, 304, 878
FalI AAGNNNNNCTT 8 cut(s) 29, 61, 458, 490, 908, 940, 1229, 1261
FaqI GGGAC 1 cut(s) 960
FatI CATG 3 cut(s) 138, 300, 874
FblI GTMKAC 2 cut(s) 135, 1269
Fnu4HI GCNGC 2 cut(s) 396, 830
FokI GGATG 3 cut(s) 532, 969, 1059
Fsp4HI GCNGC 2 cut(s) 396, 830
GluI GCNGC 2 cut(s) 396, 830
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 1 cut(s) 1155
Hin1II CATG 3 cut(s) 142, 304, 878
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 7 cut(s) 155, 571, 815, 836, 1055, 1118, 1256
HphI GGTGA 2 cut(s) 650, 795
Hpy166II GTNNAC 5 cut(s) 136, 631, 964, 1243, 1270
Hpy188I TCNGA 5 cut(s) 35, 744, 786, 841, 1261
Hpy188III TCNNGA 7 cut(s) 220, 475, 575, 693, 875, 986, 1132
Hpy8I GTNNAC 5 cut(s) 136, 631, 964, 1243, 1270
HpyAV CCTTC 4 cut(s) 298, 484, 741, 1231
HpyCH4III ACNGT 4 cut(s) 227, 635, 1049, 1080
HpyCH4V TGCA 7 cut(s) 10, 287, 556, 661, 671, 829, 964
HpyF3I CTNAG 7 cut(s) 32, 234, 399, 743, 884, 1260, 1293
Hsp92II CATG 3 cut(s) 142, 304, 878
Kzo9I GATC 4 cut(s) 238, 471, 577, 1128
LmnI GCTCC 1 cut(s) 1180
Lsp1109I GCAGC 2 cut(s) 407, 841
LweI GCATC 1 cut(s) 1081
MaeIII GTNAC 2 cut(s) 3, 595
MalI GATC 4 cut(s) 240, 473, 579, 1130
MboI GATC 4 cut(s) 238, 471, 577, 1128
MboII GAAGA 8 cut(s) 37, 160, 430, 617, 810, 863, 928, 1147
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 180, 966
MluCI AATT 5 cut(s) 336, 364, 380, 507, 1029
MlyI GAGTC 4 cut(s) 149, 1064, 1127, 1265
MseI TTAA 4 cut(s) 129, 762, 933, 1035
MslI CAYNNNNRTG 1 cut(s) 1206
MspA1I CMGCKG 1 cut(s) 398
MspCI CTTAAG 1 cut(s) 932
MspR9I CCNGG 1 cut(s) 373
Mva1269I GAATGC 2 cut(s) 673, 901
MvaI CCWGG 1 cut(s) 373
NdeII GATC 4 cut(s) 238, 471, 577, 1128
NlaIII CATG 3 cut(s) 142, 304, 878
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 595
PagI TCATGA 1 cut(s) 874
PctI GAATGC 2 cut(s) 673, 901
PfeI GAWTC 3 cut(s) 571, 815, 836
PkrI GCNGC 2 cut(s) 397, 831
PleI GAGTC 4 cut(s) 149, 1063, 1126, 1264
PpsI GAGTC 4 cut(s) 149, 1063, 1126, 1264
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 238
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 3 cut(s) 80, 297, 1024
RsaNI GTAC 3 cut(s) 79, 296, 1023
RseI CAYNNNNRTG 1 cut(s) 1206
SaqAI TTAA 4 cut(s) 129, 762, 933, 1035
SatI GCNGC 2 cut(s) 396, 830
Sau3AI GATC 4 cut(s) 238, 471, 577, 1128
SchI GAGTC 4 cut(s) 149, 1064, 1127, 1265
ScrFI CCNGG 1 cut(s) 373
SduI GDGCHC 2 cut(s) 180, 966
SfaNI GCATC 1 cut(s) 1081
SmiMI CAYNNNNRTG 1 cut(s) 1206
SmlI CTYRAG 2 cut(s) 218, 932
SmoI CTYRAG 2 cut(s) 218, 932
Sse9I AATT 5 cut(s) 336, 364, 380, 507, 1029
StyD4I CCNGG 1 cut(s) 371
TaaI ACNGT 4 cut(s) 227, 635, 1049, 1080
TaqI TCGA 1 cut(s) 265
TaqII GACCGA 1 cut(s) 570
TasI AATT 5 cut(s) 336, 364, 380, 507, 1029
TfiI GAWTC 3 cut(s) 571, 815, 836
Tru1I TTAA 4 cut(s) 129, 762, 933, 1035
Tru9I TTAA 4 cut(s) 129, 762, 933, 1035
TscAI CASTG 4 cut(s) 640, 1083, 1092, 1131
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 2 cut(s) 395, 829
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 5 cut(s) 155, 317, 689, 858, 863
TspGWI ACGGA 2 cut(s) 578, 711
TspRI CASTG 4 cut(s) 640, 1083, 1092, 1131
Vha464I CTTAAG 1 cut(s) 932
VneI GTGCAC 1 cut(s) 962
XmiI GTMKAC 2 cut(s) 135, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.