Rorug01G0168100

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016659
Physical Location & Seq
Reverse (-)
22961957 .. 22963961
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0168100.1

Sequence Viewer

Length: 576 bp
ATGACGGTGGAACTGACGCCGAACGCGGTGGTCGCCATCATCGGCGGCAATGTCGACTTGAAGCCGGTGTTGCAGGTCACCGATATCAATCCCATCAGGCCCACCGGCTTGCCAGTGTGTTACCGGTTGATGGTTTCCGACGGCGTTTGGTCTCATCACGCCATGGTCGCCTTTCAGCTCAATGACCTATTTGGGACTGACTTTGGGACTGACCAGGTCAGGAAAGGCTCCGTCGTCCGGTTCACCGACTACATTTGCACCAATGTCCAGGACCGCAAGCTTATTGTTGTGATGAATATGGAAACTATTGTACTGGACTGGGAGCTTATTGGGAATCCAAAACAATATGTAAAGTCTGGTACAACTGCTCAAACTGCATTGCCTAAGAACAATTTCCAGCAGTCTGCCTATGGCAACATTCATATGATTGGCCAAGAGCCTGTTTCCAAATGCCAGAATCCCAGGCCCTCTTTTCATCCTGAAAACTCTGTTTCCAGTATGCCAAATGTCAGACCTACATTTCAATCTGAAAGCTCTTCTGACTGTTCCGAATCCGAGACCTACATTTCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

191

Amino Acids

21.12

Weight (kDa)

5.5

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rep-A_N PF04057 5 - 104 1.9e-21 Replication factor-A protein 1, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39120
fragaria_vesca FvH4_7g08660
malus_domestica MD01G1105000.v1.1
prunus_persica Prupe.2G210300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343651
rosa_laevigata RLG00000028956
rosa_multiflora Rmu_sc0000021.1_g000005 Rmu_sc0007600.1_g000003
rosa_roxburghii Rroxscaffold_4G00310400
rosa_rugosa Rorug01G0168100 Rorug01G0168200
rosa_samantha Rh1AG184100 Rh1CG171000
rosa_wichuraiana Rw1G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 54
AccII CGCG 1 cut(s) 26
AciI CCGC 3 cut(s) 26, 45, 274
AcoI YGGCCR 1 cut(s) 430
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 2 cut(s) 312, 361
AfiI CCNNNNNNNGG 2 cut(s) 130, 237
AgeI ACCGGT 1 cut(s) 123
AgsI TTSAA 2 cut(s) 61, 524
AjnI CCWGG 3 cut(s) 213, 267, 461
AluBI AGCT 4 cut(s) 178, 280, 325, 534
AluI AGCT 4 cut(s) 178, 280, 325, 534
Alw26I GTCTC 2 cut(s) 156, 551
AoxI GGCC 3 cut(s) 98, 430, 464
AsiGI ACCGGT 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 99, 271, 465
AsuHPI GGTGA 2 cut(s) 70, 235
AvaII GGWCC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 432
BccI CCATC 3 cut(s) 44, 101, 124
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 3 cut(s) 215, 269, 463
BcoDI GTCTC 2 cut(s) 156, 551
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 3 cut(s) 215, 269, 463
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 99, 271, 465
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 3 cut(s) 215, 269, 463
BmrI ACTGGG 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 17
BsaI GGTCTC 2 cut(s) 156, 551
BsaJI CCNNGG 2 cut(s) 162, 461
BsaWI WCCGGW 2 cut(s) 123, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 237
Bse118I RCCGGY 3 cut(s) 64, 104, 123
Bse1I ACTGG 4 cut(s) 113, 318, 323, 495
Bse3DI GCAATG 2 cut(s) 55, 377
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 3 cut(s) 215, 269, 463
BseDI CCNNGG 2 cut(s) 162, 461
BseGI GGATG 2 cut(s) 475, 569
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 130, 237
BseMI GCAATG 2 cut(s) 55, 377
BseNI ACTGG 4 cut(s) 113, 318, 323, 495
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 100, 432, 466
BshTI ACCGGT 1 cut(s) 123
BsiSI CCGG 4 cut(s) 65, 105, 124, 238
BslFI GGGAC 2 cut(s) 208, 220
BslI CCNNNNNNNGG 2 cut(s) 130, 237
BsmAI GTCTC 2 cut(s) 156, 551
BsmFI GGGAC 2 cut(s) 208, 220
BsnI GGCC 3 cut(s) 100, 432, 466
Bso31I GGTCTC 2 cut(s) 156, 551
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 3 cut(s) 26, 45, 274
BspANI GGCC 3 cut(s) 100, 432, 466
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 541
BspTNI GGTCTC 2 cut(s) 156, 551
BsrDI GCAATG 2 cut(s) 55, 377
BsrFI RCCGGY 3 cut(s) 64, 104, 123
BsrI ACTGG 4 cut(s) 113, 318, 323, 495
BssAI RCCGGY 3 cut(s) 64, 104, 123
BssECI CCNNGG 2 cut(s) 162, 461
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 3 cut(s) 215, 269, 463
Bst4CI ACNGT 2 cut(s) 7, 545
Bst6I CTCTTC 1 cut(s) 541
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 110, 278
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 2 cut(s) 475, 569
BstFNI CGCG 1 cut(s) 26
BstMAI GTCTC 2 cut(s) 156, 551
BstMWI GCNNNNNNNGC 4 cut(s) 32, 70, 167, 374
BstNI CCWGG 3 cut(s) 215, 269, 463
BstPI GGTNACC 1 cut(s) 76
BstSCI CCNGG 3 cut(s) 213, 267, 461
BstUI CGCG 1 cut(s) 26
BsuRI GGCC 3 cut(s) 100, 432, 466
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 475, 569
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 110, 278
Cfr10I RCCGGY 3 cut(s) 64, 104, 123
Cfr13I GGNCC 3 cut(s) 99, 271, 465
CseI GACGC 1 cut(s) 25
CsiI ACCWGGT 1 cut(s) 213
Csp6I GTAC 2 cut(s) 311, 360
CspAI ACCGGT 1 cut(s) 123
CviAII CATG 1 cut(s) 163
CviQI GTAC 2 cut(s) 311, 360
DdeI CTNAG 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 162
Eco31I GGTCTC 2 cut(s) 156, 551
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 465
EcoO65I GGTNACC 1 cut(s) 76
EcoRII CCWGG 3 cut(s) 213, 267, 461
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 166
FaiI YATR 7 cut(s) 164, 299, 348, 411, 423, 425, 500
FaqI GGGAC 2 cut(s) 208, 220
FatI CATG 1 cut(s) 162
FauNDI CATATG 1 cut(s) 423
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 2 cut(s) 462, 556
Fsp4HI GCNGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 46
HaeIII GGCC 3 cut(s) 100, 432, 466
HapII CCGG 4 cut(s) 65, 105, 124, 238
HgaI GACGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 1 cut(s) 166
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 3 cut(s) 334, 457, 551
HpaII CCGG 4 cut(s) 65, 105, 124, 238
HphI GGTGA 2 cut(s) 70, 235
Hpy166II GTNNAC 2 cut(s) 55, 243
Hpy188I TCNGA 6 cut(s) 139, 512, 529, 541, 550, 556
Hpy188III TCNNGA 3 cut(s) 220, 479, 573
Hpy8I GTNNAC 2 cut(s) 55, 243
Hpy99I CGWCG 2 cut(s) 143, 236
HpyCH4III ACNGT 2 cut(s) 7, 545
HpyCH4V TGCA 3 cut(s) 73, 258, 377
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 70, 167, 374
HpyF3I CTNAG 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 166
LguI GCTCTTC 1 cut(s) 541
LmnI GCTCC 2 cut(s) 233, 322
MabI ACCWGGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 76, 119
MboII GAAGA 1 cut(s) 528
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 1 cut(s) 391
MluNI TGGCCA 1 cut(s) 432
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 1 cut(s) 478
Mox20I TGGCCA 1 cut(s) 432
MroXI GAANNNNTTC 1 cut(s) 392
MscI TGGCCA 1 cut(s) 432
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 432
MspI CCGG 4 cut(s) 65, 105, 124, 238
MspR9I CCNGG 3 cut(s) 215, 269, 463
MvaI CCWGG 3 cut(s) 215, 269, 463
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 4 cut(s) 32, 70, 167, 374
NcoI CCATGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 423
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 76
PciSI GCTCTTC 1 cut(s) 541
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 3 cut(s) 334, 457, 551
PflFI GACNNNGTC 1 cut(s) 215
PfoI TCCNGGA 1 cut(s) 267
PinAI ACCGGT 1 cut(s) 123
PkrI GCNGC 1 cut(s) 47
Psp6I CCWGG 3 cut(s) 213, 267, 461
PspEI GGTNACC 1 cut(s) 76
PspGI CCWGG 3 cut(s) 213, 267, 461
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 3 cut(s) 99, 271, 465
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 2 cut(s) 312, 361
RsaNI GTAC 2 cut(s) 311, 360
RseI CAYNNNNRTG 1 cut(s) 422
SalI GTCGAC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 541
SatI GCNGC 1 cut(s) 46
Sau96I GGNCC 3 cut(s) 99, 271, 465
ScrFI CCNGG 3 cut(s) 215, 269, 463
SetI ASST 9 cut(s) 78, 180, 189, 219, 282, 327, 517, 536, 563
SexAI ACCWGGT 1 cut(s) 213
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 1 cut(s) 391
SsiI CCGC 3 cut(s) 26, 45, 274
StyD4I CCNGG 3 cut(s) 213, 267, 461
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 7, 545
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 391
TatI WGTACW 1 cut(s) 310
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 334, 457, 551
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 4 cut(s) 308, 410, 464, 558
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 120
Tth111I GACNNNGTC 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.