Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007600.1

Orthogroup ID

OG0016659

Physical Location & Seq

Genomic Coordinates Forward (+)

12075 .. 13232

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007600.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgaaatggaagaaagactcgtactttgactccattgagcacatcgacaagtccatagtggttaaacccatcattaacctcaagaactgcattactgaagatcccaatggctgtatcccagtttatgaagtgtccaaaagggctcttcaattagatgtacccatgaaggttgccaagtttttgaggaaatacccatcaatctttgaggagtttgctggtgaatacaatcatccctggtttagattgaccccagaagcagctgagattgatagggaggagaagagggtttatgaggattgtagggtggatttgaggtataggctgaaaaagttgattttgatgagcaaagaaaaggttttgcctttgaaaattattcaggggatggaatggtttttgggtttgcctgatgattttttgcactacccggaaaagaatctggatgggtcttttcggtttgtgacaatggaagatgggttagagggattagctgttgacagtggtgaaaaggtcttgtctgtcgtgcaaaggaatgcaatgaaaaaaggggtgtattctggagctccaacagaggcaattgagttcccgcttttcccttccaagggtttgaggttgaggaacaagattgaagattggttaaaggagtttcagaaacttccctatgtttcaccttatgaggattttttacatttactgccggatactgatgcatccgagaaacgagttgtggggcttcttcatgagttgcttagtctatttgttgagcattcagcagagaggaagaagctcaagtgtcttaagaagtatatgggactgccgcagaaagtgcacagagcatttgagagacatcctgggattttctatttgtcatttaagaacaagacttgtacggtaattcttaaagaggcttactgtgatgagtctgctattgagaagcatccacttttggaagtgaggaaaaagtatattagattgatgagggagtcggcagtgatcttgaagaataggagagtgaatggccggttggctggtggtgggaatatggagccagatttggatttggaacctaagattgaagacagaggagatggagggaatacagaggtggacttggatttggattctgagaatgaccaaagagatggagagtgttctcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

385

Amino Acids

44.64

Weight (kDa)

6.55

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39120
fragaria_vesca	FvH4_7g08660
malus_domestica	MD01G1105000.v1.1
prunus_persica	Prupe.2G210300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0343651
rosa_laevigata	RLG00000028956
rosa_multiflora	Rmu_sc0000021.1_g000005 Rmu_sc0007600.1_g000003
rosa_roxburghii	Rroxscaffold_4G00310400
rosa_rugosa	Rorug01G0168100 Rorug01G0168200
rosa_samantha	Rh1AG184100 Rh1CG171000
rosa_wichuraiana	Rw1G015260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	584, 815
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	1015
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	3 cut(s)	23, 159, 886
AfiI	CCNNNNNNNGG	2 cut(s)	598, 599
AflII	CTTAAG	1 cut(s)	794
AgsI	TTSAA	5 cut(s)	149, 367, 626, 997, 1073
AjnI	CCWGG	2 cut(s)	233, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	1004, 1036
AluBI	AGCT	4 cut(s)	260, 488, 560, 784
AluI	AGCT	4 cut(s)	260, 488, 560, 784
Alw21I	GWGCWC	3 cut(s)	42, 562, 828
Alw26I	GTCTC	1 cut(s)	835
Alw44I	GTGCAC	1 cut(s)	824
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	1015
ApaLI	GTGCAC	1 cut(s)	824
ApeKI	GCWGC	1 cut(s)	257
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	3 cut(s)	230, 512, 657
BaeGI	GKGCMC	1 cut(s)	828
BanII	GRGCYC	2 cut(s)	145, 562
BbsI	GAAGAC	1 cut(s)	1080
Bbv12I	GWGCWC	3 cut(s)	42, 562, 828
BbvI	GCAGC	1 cut(s)	269
BccI	CCATC	7 cut(s)	77, 202, 376, 434, 464, 1079, 1133
BciT130I	CCWGG	2 cut(s)	235, 849
BciVI	GTATCC	2 cut(s)	125, 691
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	835
BfrI	CTTAAG	1 cut(s)	794
BfuI	GTATCC	2 cut(s)	125, 691
BisI	GCNGC	2 cut(s)	258, 815
BlsI	GCNGC	2 cut(s)	259, 816
Bme1390I	CCNGG	3 cut(s)	235, 425, 849
BmiI	GGNNCC	2 cut(s)	1044, 1062
BmrFI	CCNGG	3 cut(s)	235, 425, 849
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	3 cut(s)	694, 716, 943
BmuI	ACTGGG	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	1080
BpmI	CTGGAG	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	65, 770
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	233, 597, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	2 cut(s)	598, 599
Bse118I	RCCGGY	1 cut(s)	1017
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	540
BseBI	CCWGG	2 cut(s)	235, 849
BseDI	CCNNGG	3 cut(s)	233, 597, 848
BseGI	GGATG	6 cut(s)	229, 387, 445, 707, 844, 934
BseLI	CCNNNNNNNGG	2 cut(s)	598, 599
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	2 cut(s)	252, 1113
BseNI	ACTGG	1 cut(s)	119
BseRI	GAGGAG	3 cut(s)	221, 290, 1095
BseSI	GKGCMC	1 cut(s)	828
BseXI	GCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	1017
BsiHKAI	GWGCWC	3 cut(s)	42, 562, 828
BsiSI	CCGG	3 cut(s)	425, 695, 1018
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	2 cut(s)	598, 599
BsmAI	GTCTC	1 cut(s)	835
BsmFI	GGGAC	1 cut(s)	822
BsmI	GAATGC	2 cut(s)	535, 763
BsnI	GGCC	1 cut(s)	1017
Bsp1286I	GDGCHC	4 cut(s)	42, 145, 562, 828
Bsp143I	GATC	2 cut(s)	100, 990
BspACI	CCGC	2 cut(s)	584, 815
BspANI	GGCC	1 cut(s)	1017
BspCNI	CTCAG	2 cut(s)	253, 1114
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	1044, 1062
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	794
BsrDI	GCAATG	1 cut(s)	540
BsrFI	RCCGGY	1 cut(s)	1017
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	1 cut(s)	1017
BssECI	CCNNGG	3 cut(s)	233, 597, 848
BssMI	GATC	2 cut(s)	100, 990
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	2 cut(s)	235, 849
Bst4CI	ACNGT	3 cut(s)	497, 889, 911
Bst6I	CTCTTC	2 cut(s)	150, 275
BstAFI	CTTAAG	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstDEI	CTNAG	5 cut(s)	261, 746, 1065, 1122, 1152
BstF5I	GGATG	6 cut(s)	229, 387, 445, 707, 844, 934
BstKTI	GATC	2 cut(s)	103, 993
BstMAI	GTCTC	1 cut(s)	835
BstMBI	GATC	2 cut(s)	100, 990
BstMWI	GCNNNNNNNGC	1 cut(s)	823
BstNI	CCWGG	2 cut(s)	235, 849
BstSCI	CCNGG	3 cut(s)	233, 423, 847
BstSLI	GKGCMC	1 cut(s)	828
BstV1I	GCAGC	1 cut(s)	269
BstV2I	GAAGAC	1 cut(s)	1080
BstX2I	RGATCY	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	1139
BstYI	RGATCY	1 cut(s)	100
BsuI	GTATCC	2 cut(s)	125, 691
BsuRI	GGCC	1 cut(s)	1017
BtsCI	GGATG	6 cut(s)	229, 387, 445, 707, 844, 934
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	2 cut(s)	502, 993
CciI	TCATGA	1 cut(s)	736
Cfr10I	RCCGGY	1 cut(s)	1017
Csp6I	GTAC	3 cut(s)	22, 158, 885
CviAII	CATG	2 cut(s)	163, 737
CviQI	GTAC	3 cut(s)	22, 158, 885
DdeI	CTNAG	5 cut(s)	261, 746, 1065, 1122, 1152
DpnI	GATC	2 cut(s)	102, 992
DpnII	GATC	2 cut(s)	100, 990
EaeI	YGGCCR	1 cut(s)	1015
Eam1104I	CTCTTC	2 cut(s)	150, 275
EarI	CTCTTC	2 cut(s)	150, 275
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	2 cut(s)	145, 562
Eco53kI	GAGCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	560
EcoRII	CCWGG	2 cut(s)	233, 847
EcoT14I	CCWWGG	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	2 cut(s)	145, 562
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	2 cut(s)	166, 740
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	2 cut(s)	162, 736
FauI	CCCGC	1 cut(s)	591
Fnu4HI	GCNGC	2 cut(s)	258, 815
FokI	GGATG	6 cut(s)	216, 394, 452, 694, 831, 921
FriOI	GRGCYC	2 cut(s)	145, 562
Fsp4HI	GCNGC	2 cut(s)	258, 815
GluI	GCNGC	2 cut(s)	258, 815
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	1017
HapII	CCGG	3 cut(s)	425, 695, 1018
Hin1II	CATG	2 cut(s)	166, 740
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	6 cut(s)	17, 29, 433, 917, 980, 1118
HpaII	CCGG	3 cut(s)	425, 695, 1018
HphI	GGTGA	3 cut(s)	230, 512, 657
Hpy166II	GTNNAC	3 cut(s)	493, 826, 1105
Hpy188I	TCNGA	3 cut(s)	648, 712, 1123
Hpy188III	TCNNGA	5 cut(s)	82, 437, 555, 737, 994
Hpy8I	GTNNAC	3 cut(s)	493, 826, 1105
HpyAV	CCTTC	2 cut(s)	160, 603
HpyCH4III	ACNGT	3 cut(s)	497, 889, 911
HpyCH4V	TGCA	6 cut(s)	90, 418, 523, 533, 707, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	823
HpyF3I	CTNAG	5 cut(s)	261, 746, 1065, 1122, 1152
Hsp92II	CATG	2 cut(s)	166, 740
Kzo9I	GATC	2 cut(s)	100, 990
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	3 cut(s)	557, 565, 1042
Lsp1109I	GCAGC	1 cut(s)	269
LweI	GCATC	3 cut(s)	694, 716, 943
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	102, 992
MboI	GATC	2 cut(s)	100, 990
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	4 cut(s)	42, 145, 562, 828
MluCI	AATT	4 cut(s)	149, 369, 573, 891
MlyI	GAGTC	4 cut(s)	11, 23, 926, 989
MmeI	TCCRAC	1 cut(s)	587
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	6 cut(s)	63, 75, 635, 795, 870, 897
MspA1I	CMGCKG	1 cut(s)	260
MspCI	CTTAAG	1 cut(s)	794
MspI	CCGG	3 cut(s)	425, 695, 1018
MspR9I	CCNGG	3 cut(s)	235, 425, 849
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	2 cut(s)	535, 763
MvaI	CCWGG	2 cut(s)	235, 849
MwoI	GCNNNNNNNGC	1 cut(s)	823
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	2 cut(s)	100, 990
NlaIII	CATG	2 cut(s)	166, 740
NlaIV	GGNNCC	2 cut(s)	1044, 1062
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	709
PagI	TCATGA	1 cut(s)	736
PciSI	GCTCTTC	1 cut(s)	150
PctI	GAATGC	2 cut(s)	535, 763
PfeI	GAWTC	2 cut(s)	433, 1118
PkrI	GCNGC	2 cut(s)	259, 816
PleI	GAGTC	4 cut(s)	11, 23, 925, 988
PpsI	GAGTC	4 cut(s)	11, 23, 925, 988
Psp124BI	GAGCTC	1 cut(s)	562
Psp6I	CCWGG	2 cut(s)	233, 847
PspGI	CCWGG	2 cut(s)	233, 847
PspN4I	GGNNCC	2 cut(s)	1044, 1062
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	3 cut(s)	23, 159, 886
RsaNI	GTAC	3 cut(s)	22, 158, 885
SacI	GAGCTC	1 cut(s)	562
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	6 cut(s)	63, 75, 635, 795, 870, 897
SatI	GCNGC	2 cut(s)	258, 815
Sau3AI	GATC	2 cut(s)	100, 990
SchI	GAGTC	4 cut(s)	11, 23, 926, 989
ScrFI	CCNGG	3 cut(s)	235, 425, 849
SduI	GDGCHC	4 cut(s)	42, 145, 562, 828
SfaNI	GCATC	3 cut(s)	694, 716, 943
SmlI	CTYRAG	3 cut(s)	80, 785, 794
SmoI	CTYRAG	3 cut(s)	80, 785, 794
Sse9I	AATT	4 cut(s)	149, 369, 573, 891
SsiI	CCGC	2 cut(s)	584, 815
SstI	GAGCTC	1 cut(s)	562
StyD4I	CCNGG	3 cut(s)	233, 423, 847
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	3 cut(s)	497, 889, 911
TaqI	TCGA	1 cut(s)	45
TasI	AATT	4 cut(s)	149, 369, 573, 891
TauI	GCSGC	1 cut(s)	817
TfiI	GAWTC	2 cut(s)	433, 1118
Tru1I	TTAA	6 cut(s)	63, 75, 635, 795, 870, 897
Tru9I	TTAA	6 cut(s)	63, 75, 635, 795, 870, 897
TscAI	CASTG	2 cut(s)	502, 993
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	5 cut(s)	17, 141, 179, 551, 725
TspRI	CASTG	2 cut(s)	502, 993
Vha464I	CTTAAG	1 cut(s)	794
VneI	GTGCAC	1 cut(s)	824
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.