RLG00000028956

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016659
Physical Location & Seq
Forward (+)
30660189 .. 30663039
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028956

Sequence Viewer

Length: 1452 bp
ATGTTACTGACCAAACCCACTTCCAAAACCCTGACAAAGCTACTCTTCCCTTATCAAAATTCAATCTTTTCCTCTTTGTACCAGCCCCAAAACCCTGCTTTCACATACACCCAGAAATCCAACTATGTTAATGTCTACATGAAATGGAAGAAAGACTCATACTTTGACTCCATTGAGCACATCGACAAGTCCATAGTGCTTAAACCCATCATTAACCTCAAGAACTGCATTACTGAAGATCCCAGTGGCTGTATCCCAATCTATGAAGTGTCCAAAAGGGGTTTTCAATTAGATGTACCCATGAAGGTTGCCAAGTTTTTGAGGAAATACCCATCAATCTTTGAAGAGTTTGCTGGTGAATACAATCATCCCTGGTTTAAATTGACCCCAGAAGCAGCTGAGATTGATAGGGAGGAGAAGAGGGTTTATGAGGATTGTAGGGTGGATTTGAGGTATAGGCTGAAAAAATTGATCTTGATGAGTAAAGAAAAGGTTTTGCCTCTGAAAATTATTCAGGGGATGGAGTGGTTTTTGGGTTTGCCTGATGATTTTTTGCATTACCCGGAAAAGAATTTGGATGGGTCTTTTCGGTTTGTGACAATGGAAGATGGGTTAGAGGGATTAGCTGTTGACAGTGGTGAAAAGGTCTTGTCTGTCGTGCAAAGGAATGCAATGAAAAAAGGGGTGTATTGTGGAGGTCCAACAGAGGCAATTGAGTTCCCGCTTTTCCCTTCCAAGGGTTTGAGGTTGAGGAACAAGATTGAAGATTGGTTAAAGGAGTTTCAGAAACTTCCCTATGTTTCACCTTATGAGGATTTTTCACATTTACGGCCGGATACTGATGCATCCGAGAAACGAGTTGTGGGGCTTCTTCATGAGTTGCTTAGTCTATTTGTTGAGCATTCAGCAGAAAGGAAGAAGCTCAAGTGTCTTAAGAAGTATATGGGACTGCCGCAGAAAGTGCACAGAGCATTTGAGAGACATCCTGGGATTTTCTATATGTCATATAAGAACAAGACTTGTACGGTAATTCTTAAAGAGGCTTACTGTGATGAGTTTGCTATTGAGAAGCATCCACTTTTGGAAGTGAGGAAAAAGTATATTAGATTGATGAGGGAGTCGGCGGTGATCTTGAAGAATAGGAGAGTGAATGGCCGGTTAGCTGGTGGTGGGAATATCGAGCCGGATTTGGATTTGGAACCTAAGATTGAAGACAGAGGAGATGGAGGGAATACCGAGTTGGACTTGGATTATGAGAATGACCAAAGAGATGGAGAGTGCATTGAAAACAATAACGACGCTGTGAATGATTTTGGCAGAAAGATGGACACCAGTGATTATAGAAATCAGGAAAATGAGGCAGATGGTCCTATAGATGAGTATGCTGTTGATGGTGAAGTAGGGGGAAGGCTGAATCAGATGGTTCATGTTCCTCAATCCTTTGATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

484

Amino Acids

56.0

Weight (kDa)

6.15

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 50 - 374 4e-107 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39120
fragaria_vesca FvH4_7g08660
malus_domestica MD01G1105000.v1.1
prunus_persica Prupe.2G210300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343651
rosa_laevigata RLG00000028956
rosa_multiflora Rmu_sc0000021.1_g000005 Rmu_sc0007600.1_g000003
rosa_roxburghii Rroxscaffold_4G00310400
rosa_rugosa Rorug01G0168100 Rorug01G0168200
rosa_samantha Rh1AG184100 Rh1CG171000
rosa_wichuraiana Rw1G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AciI CCGC 3 cut(s) 722, 953, 1124
AclWI GGATC 1 cut(s) 233
AcoI YGGCCR 2 cut(s) 830, 1153
AcsI RAATTY 2 cut(s) 58, 571
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 3 cut(s) 80, 297, 1024
AfiI CCNNNNNNNGG 2 cut(s) 736, 737
AflII CTTAAG 1 cut(s) 932
AgsI TTSAA 7 cut(s) 63, 287, 344, 764, 1135, 1211, 1286
AjnI CCWGG 2 cut(s) 371, 985
AjuI GAANNNNNNNTTGG 2 cut(s) 1223, 1255
AluBI AGCT 5 cut(s) 40, 398, 626, 922, 1163
AluI AGCT 5 cut(s) 40, 398, 626, 922, 1163
Alw21I GWGCWC 2 cut(s) 180, 966
Alw26I GTCTC 1 cut(s) 973
Alw44I GTGCAC 1 cut(s) 962
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 249
AoxI GGCC 2 cut(s) 830, 1153
ApaLI GTGCAC 1 cut(s) 962
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 58, 571
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspS9I GGNCC 2 cut(s) 698, 1367
AsuC2I CCSGG 1 cut(s) 563
AsuHPI GGTGA 5 cut(s) 368, 650, 795, 1138, 1406
AvaII GGWCC 2 cut(s) 698, 1367
BaeGI GKGCMC 1 cut(s) 966
BbsI GAAGAC 1 cut(s) 1218
Bbv12I GWGCWC 2 cut(s) 180, 966
BbvI GCAGC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 845
BciT130I CCWGG 2 cut(s) 373, 987
BciVI GTATCC 2 cut(s) 263, 829
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 973
BfmI CTRYAG 1 cut(s) 1371
BfrI CTTAAG 1 cut(s) 932
BfuI GTATCC 2 cut(s) 263, 829
BisI GCNGC 2 cut(s) 396, 953
BlsI GCNGC 2 cut(s) 397, 954
Bme1390I CCNGG 3 cut(s) 373, 563, 987
Bme18I GGWCC 2 cut(s) 698, 1367
BmgT120I GGNCC 2 cut(s) 698, 1367
BmiI GGNNCC 1 cut(s) 1200
BmrFI CCNGG 3 cut(s) 373, 563, 987
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 3 cut(s) 832, 854, 1081
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 1218
BpuEI CTTGAG 2 cut(s) 203, 908
BpuMI CCSGG 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 371, 735, 986
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 736, 737
Bse118I RCCGGY 1 cut(s) 1155
Bse1I ACTGG 2 cut(s) 243, 1332
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 2 cut(s) 373, 987
BseDI CCNNGG 3 cut(s) 371, 735, 986
BseGI GGATG 6 cut(s) 367, 525, 583, 845, 982, 1072
BseLI CCNNNNNNNGG 2 cut(s) 736, 737
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 243, 1332
BseRI GAGGAG 2 cut(s) 428, 1233
BseSI GKGCMC 1 cut(s) 966
BseX3I CGGCCG 1 cut(s) 830
BseXI GCAGC 1 cut(s) 407
Bsh1285I CGRYCG 1 cut(s) 833
BshFI GGCC 2 cut(s) 832, 1155
BsiEI CGRYCG 1 cut(s) 833
BsiHKAI GWGCWC 2 cut(s) 180, 966
BsiSI CCGG 4 cut(s) 563, 833, 1156, 1184
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 2 cut(s) 736, 737
BsmAI GTCTC 1 cut(s) 973
BsmFI GGGAC 1 cut(s) 960
BsmI GAATGC 2 cut(s) 673, 901
BsnI GGCC 2 cut(s) 832, 1155
Bsp1286I GDGCHC 2 cut(s) 180, 966
Bsp143I GATC 3 cut(s) 238, 471, 1128
BspACI CCGC 3 cut(s) 722, 953, 1124
BspANI GGCC 2 cut(s) 832, 1155
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 1 cut(s) 1200
BspPI GGATC 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 932
BsrDI GCAATG 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 1155
BsrI ACTGG 2 cut(s) 243, 1332
BssAI RCCGGY 1 cut(s) 1155
BssECI CCNNGG 3 cut(s) 371, 735, 986
BssMI GATC 3 cut(s) 238, 471, 1128
BssT1I CCWWGG 1 cut(s) 735
Bst2UI CCWGG 2 cut(s) 373, 987
Bst4CI ACNGT 3 cut(s) 635, 1027, 1049
Bst6I CTCTTC 3 cut(s) 50, 339, 413
BstAFI CTTAAG 1 cut(s) 932
BstAPI GCANNNNNTGC 1 cut(s) 961
BstDEI CTNAG 3 cut(s) 399, 884, 1203
BstF5I GGATG 6 cut(s) 367, 525, 583, 845, 982, 1072
BstKTI GATC 3 cut(s) 241, 474, 1131
BstMAI GTCTC 1 cut(s) 973
BstMBI GATC 3 cut(s) 238, 471, 1128
BstMCI CGRYCG 1 cut(s) 833
BstMWI GCNNNNNNNGC 1 cut(s) 961
BstNI CCWGG 2 cut(s) 373, 987
BstSCI CCNGG 3 cut(s) 371, 561, 985
BstSFI CTRYAG 1 cut(s) 1371
BstSLI GKGCMC 1 cut(s) 966
BstV1I GCAGC 1 cut(s) 407
BstV2I GAAGAC 1 cut(s) 1218
BstX2I RGATCY 1 cut(s) 238
BstXI CCANNNNNNTGG 1 cut(s) 1271
BstYI RGATCY 1 cut(s) 238
BstZI CGGCCG 1 cut(s) 830
BsuI GTATCC 2 cut(s) 263, 829
BsuRI GGCC 2 cut(s) 832, 1155
BtsCI GGATG 6 cut(s) 367, 525, 583, 845, 982, 1072
BtsIMutI CAGTG 3 cut(s) 250, 640, 1339
CaiI CAGNNNCTG 1 cut(s) 249
CciI TCATGA 1 cut(s) 874
Cfr10I RCCGGY 1 cut(s) 1155
Cfr13I GGNCC 2 cut(s) 698, 1367
CseI GACGC 1 cut(s) 1307
Csp6I GTAC 3 cut(s) 79, 296, 1023
CviAII CATG 4 cut(s) 139, 301, 875, 1427
CviQI GTAC 3 cut(s) 79, 296, 1023
DdeI CTNAG 3 cut(s) 399, 884, 1203
DpnI GATC 3 cut(s) 240, 473, 1130
DpnII GATC 3 cut(s) 238, 471, 1128
DraI TTTAAA 1 cut(s) 379
EaeI YGGCCR 2 cut(s) 830, 1153
EagI CGGCCG 1 cut(s) 830
Eam1104I CTCTTC 3 cut(s) 50, 339, 413
EarI CTCTTC 3 cut(s) 50, 339, 413
EclXI CGGCCG 1 cut(s) 830
Eco130I CCWWGG 1 cut(s) 735
Eco47I GGWCC 2 cut(s) 698, 1367
Eco52I CGGCCG 1 cut(s) 830
Eco57I CTGAAG 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 371, 985
EcoT14I CCWWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 847
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 4 cut(s) 142, 304, 878, 1430
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 960
FatI CATG 4 cut(s) 138, 300, 874, 1426
FauI CCCGC 1 cut(s) 729
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 396, 953
FokI GGATG 6 cut(s) 354, 532, 590, 832, 969, 1059
Fsp4HI GCNGC 2 cut(s) 396, 953
GluI GCNGC 2 cut(s) 396, 953
HaeIII GGCC 2 cut(s) 832, 1155
HapII CCGG 4 cut(s) 563, 833, 1156, 1184
HgaI GACGC 1 cut(s) 1307
Hin1II CATG 4 cut(s) 142, 304, 878, 1430
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 5 cut(s) 155, 167, 1118, 1414, 1445
HpaII CCGG 4 cut(s) 563, 833, 1156, 1184
HphI GGTGA 5 cut(s) 368, 650, 795, 1138, 1406
Hpy166II GTNNAC 3 cut(s) 136, 631, 964
Hpy188I TCNGA 4 cut(s) 504, 786, 850, 1419
Hpy188III TCNNGA 6 cut(s) 220, 475, 875, 1132, 1349, 1449
Hpy8I GTNNAC 3 cut(s) 136, 631, 964
Hpy99I CGWCG 1 cut(s) 1301
HpyAV CCTTC 3 cut(s) 298, 741, 1401
HpyCH4III ACNGT 3 cut(s) 635, 1027, 1049
HpyCH4V TGCA 7 cut(s) 228, 556, 661, 671, 845, 964, 1281
HpyF10VI GCNNNNNNNGC 1 cut(s) 961
HpyF3I CTNAG 3 cut(s) 399, 884, 1203
Hsp92II CATG 4 cut(s) 142, 304, 878, 1430
Kzo9I GATC 3 cut(s) 238, 471, 1128
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 3 cut(s) 832, 854, 1081
MaeIII GTNAC 2 cut(s) 3, 595
MalI GATC 3 cut(s) 240, 473, 1130
MboI GATC 3 cut(s) 238, 471, 1128
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 180, 966
MluCI AATT 8 cut(s) 58, 287, 380, 467, 507, 571, 711, 1029
MlyI GAGTC 3 cut(s) 149, 161, 1127
MmeI TCCRAC 3 cut(s) 144, 725, 1221
Mph1103I ATGCAT 1 cut(s) 847
MseI TTAA 7 cut(s) 129, 201, 213, 378, 773, 933, 1035
MspA1I CMGCKG 1 cut(s) 398
MspCI CTTAAG 1 cut(s) 932
MspI CCGG 4 cut(s) 563, 833, 1156, 1184
MspR9I CCNGG 3 cut(s) 373, 563, 987
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 2 cut(s) 673, 901
MvaI CCWGG 2 cut(s) 373, 987
MwoI GCNNNNNNNGC 1 cut(s) 961
NciI CCSGG 1 cut(s) 563
NdeII GATC 3 cut(s) 238, 471, 1128
NlaIII CATG 4 cut(s) 142, 304, 878, 1430
NlaIV GGNNCC 1 cut(s) 1200
NmuCI GTSAC 1 cut(s) 595
NsiI ATGCAT 1 cut(s) 847
PagI TCATGA 1 cut(s) 874
PctI GAATGC 2 cut(s) 673, 901
PfeI GAWTC 2 cut(s) 1414, 1445
PkrI GCNGC 2 cut(s) 397, 954
PleI GAGTC 3 cut(s) 149, 161, 1126
PpsI GAGTC 3 cut(s) 149, 161, 1126
Psp6I CCWGG 2 cut(s) 371, 985
PspGI CCWGG 2 cut(s) 371, 985
PspN4I GGNNCC 1 cut(s) 1200
PspPI GGNCC 2 cut(s) 698, 1367
PstNI CAGNNNCTG 1 cut(s) 249
PsuI RGATCY 1 cut(s) 238
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 3 cut(s) 80, 297, 1024
RsaNI GTAC 3 cut(s) 79, 296, 1023
SaqAI TTAA 7 cut(s) 129, 201, 213, 378, 773, 933, 1035
SatI GCNGC 2 cut(s) 396, 953
Sau3AI GATC 3 cut(s) 238, 471, 1128
Sau96I GGNCC 2 cut(s) 698, 1367
SchI GAGTC 3 cut(s) 149, 161, 1127
ScrFI CCNGG 3 cut(s) 373, 563, 987
SduI GDGCHC 2 cut(s) 180, 966
SfaNI GCATC 3 cut(s) 832, 854, 1081
SfcI CTRYAG 1 cut(s) 1371
SinI GGWCC 2 cut(s) 698, 1367
SmlI CTYRAG 3 cut(s) 218, 923, 932
SmoI CTYRAG 3 cut(s) 218, 923, 932
Sse9I AATT 8 cut(s) 58, 287, 380, 467, 507, 571, 711, 1029
SsiI CCGC 3 cut(s) 722, 953, 1124
StyD4I CCNGG 3 cut(s) 371, 561, 985
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 3 cut(s) 635, 1027, 1049
TaqI TCGA 2 cut(s) 183, 1179
TasI AATT 8 cut(s) 58, 287, 380, 467, 507, 571, 711, 1029
TauI GCSGC 1 cut(s) 955
TfiI GAWTC 2 cut(s) 1414, 1445
Tru1I TTAA 7 cut(s) 129, 201, 213, 378, 773, 933, 1035
Tru9I TTAA 7 cut(s) 129, 201, 213, 378, 773, 933, 1035
TscAI CASTG 3 cut(s) 250, 640, 1339
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 6 cut(s) 155, 279, 317, 689, 863, 1415
TspRI CASTG 3 cut(s) 250, 640, 1339
Vha464I CTTAAG 1 cut(s) 932
VneI GTGCAC 1 cut(s) 962
VpaK11BI GGWCC 2 cut(s) 698, 1367
XapI RAATTY 2 cut(s) 58, 571
XmiI GTMKAC 1 cut(s) 135
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.