MD01G1105000.v1.1

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016659
Physical Location & Seq
Reverse (-)
21809082 .. 21810335
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1105000.v1.1.491

Sequence Viewer

Length: 1254 bp
ATGTTACTCAAGAAACCCACCTCCAAAACCCTAAAAACCCTAATTTTCCCCTCCTTAAACCCAACCTTTTCCTTCCTGCACCTCCCCCAAAACCCTCCTCACACCCACACCCAGAAATCCACCTACGTCGATGTGTACATGAAATGGAAGAAAGACCCTTACTTTGATTCACTCGATCAAATCCACAAGTCCATTGTTCTTAAACCCATCATTTCCCTCAAGAATTTGATTGCCCAAAACCCCAATGGATGCATCCCAATCTCTGATGTCTCCAAAAGGGGGATTCAACTGGAGGTCCCCATGAAGGTTGCAAGGTTTCTGAGGCTGTACCCTTCGATTTTCGAGGAGTTTACTGGCCCGAAACACAATCTTCCATGGTTTAGATTGACCCCAGAAGCTGATGAGATCGATAGGGAGGAGAAAAGGGTTTGTGAGGAATGTAGGGAGGATTTGAGGGATAGGTTGATAAGGTTGATTCTGATGAGTGAAAAAAAGATCTTGCCTTTGAATATTGTTCAGGGAATGCAGTGGTATTTGGGTTTCCCCGATGATTTCGTGCGAAACCCGGATGCCAATTTGGATGAGAGTTTTAGATTTGTGGAGATGGAGGATGGGTTGCCGGGGTTGGCTGTTGAGAGTAGTGAGAAGGTGTTGTCTGTGGTGCAGAGGAATGCAATGAAGAGAGGGGTTTATTTCGGAGCTCCGATGGAGGCAGTTGAGTTCCCACTTTTCCCCTCTAAGGGTTTGAGGCTGAGGAGGAAGATTGTGGGTTGGTTGGAGGAGTTTCAGAAGCTTCCCTACGTTTCGCCTTACGAGGATTTTTCTCATCTGGATCCGGACAGTGATGTATCGGAGAAGCGCGTGGTGGGGCTTCTTCATGAGTTGCTGAGTCTGTTTGTTGAGCATTCAGCAGAGAGGAAGAAGCTTCTGTGTCTTAAGAAACATATGGGGATGCCGCAGAAAGTGCACAAGGCGTTTGAGCGGCATCCCCATATGTTTTACTTGTCTCTGAGGAACAAGACTTGCACTGCAATCCTCAAAGAGGCTTACTGTGATGAGTCTGCTATTGGGAGGCATCCGCTTTCGGGGGTGAGGATGAAGTACATTGATTTGATGAGGGAGTCGGCCGCGATCTTGAAGAATAGGAGAGTGAAAAACCGGTTTGTTGATCGACTGGATTCGCATACGGAAATTGAAGATGGAAAGGAGATTGCAGAGTGTTCTTACTTGTCTGACAGAGGAGTTCAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

418

Amino Acids

48.48

Weight (kDa)

8.85

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 50 - 375 2.4e-105 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39120
fragaria_vesca FvH4_7g08660
malus_domestica MD01G1105000.v1.1
prunus_persica Prupe.2G210300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343651
rosa_laevigata RLG00000028956
rosa_multiflora Rmu_sc0000021.1_g000005 Rmu_sc0007600.1_g000003
rosa_roxburghii Rroxscaffold_4G00310400
rosa_rugosa Rorug01G0168100 Rorug01G0168200
rosa_samantha Rh1AG184100 Rh1CG171000
rosa_wichuraiana Rw1G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 982
AccII CGCG 2 cut(s) 861, 1130
AccIII TCCGGA 1 cut(s) 835
AciI CCGC 4 cut(s) 956, 982, 1079, 1128
AclWI GGATC 2 cut(s) 827, 840
AcoI YGGCCR 1 cut(s) 1125
AcsI RAATTY 1 cut(s) 223
AfaI GTAC 3 cut(s) 137, 329, 1103
AfiI CCNNNNNNNGG 6 cut(s) 279, 304, 739, 740, 1042, 1085
AflII CTTAAG 1 cut(s) 935
AgeI ACCGGT 1 cut(s) 1158
AgsI TTSAA 5 cut(s) 287, 508, 1138, 1196, 1247
AluBI AGCT 4 cut(s) 398, 701, 793, 925
AluI AGCT 4 cut(s) 398, 701, 793, 925
Alw21I GWGCWC 2 cut(s) 703, 969
Alw26I GTCTC 2 cut(s) 274, 1011
Alw44I GTGCAC 1 cut(s) 965
AlwI GGATC 2 cut(s) 827, 840
AlwNI CAGNNNCTG 1 cut(s) 398
Aor13HI TCCGGA 1 cut(s) 835
AoxI GGCC 2 cut(s) 355, 1125
ApaLI GTGCAC 1 cut(s) 965
ApoI RAATTY 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsiGI ACCGGT 1 cut(s) 1158
AspLEI GCGC 1 cut(s) 861
AspS9I GGNCC 2 cut(s) 295, 356
AsuC2I CCSGG 2 cut(s) 566, 621
AsuHPI GGTGA 1 cut(s) 1102
AvaII GGWCC 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 969
BamHI GGATCC 1 cut(s) 832
BanII GRGCYC 1 cut(s) 703
BarI GAAGNNNNNNTAC 2 cut(s) 782, 814
Bbv12I GWGCWC 2 cut(s) 703, 969
BbvCI CCTCAGC 1 cut(s) 752
BccI CCATC 5 cut(s) 215, 598, 605, 700, 1193
BcnI CCSGG 2 cut(s) 566, 621
BcoDI GTCTC 2 cut(s) 274, 1011
BfrI CTTAAG 1 cut(s) 935
BglII AGATCT 1 cut(s) 495
BisI GCNGC 3 cut(s) 956, 983, 1128
BlsI GCNGC 3 cut(s) 957, 984, 1129
Bme1390I CCNGG 2 cut(s) 566, 621
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 295, 356
BmiI GGNNCC 2 cut(s) 297, 834
BmrFI CCNGG 2 cut(s) 566, 621
BmsI GCATC 6 cut(s) 239, 261, 559, 942, 994, 1084
BpmI CTGGAG 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 2 cut(s) 566, 621
Bsa29I ATCGAT 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 374, 620
BsaWI WCCGGW 2 cut(s) 835, 1158
BsaXI ACNNNNNCTCC 2 cut(s) 599, 629
Bsc4I CCNNNNNNNGG 6 cut(s) 279, 304, 739, 740, 1042, 1085
Bse118I RCCGGY 1 cut(s) 1158
Bse1I ACTGG 3 cut(s) 294, 358, 1179
Bse3DI GCAATG 1 cut(s) 681
BseAI TCCGGA 1 cut(s) 835
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 374, 620
BseGI GGATG 9 cut(s) 252, 254, 574, 586, 616, 957, 985, 1075, 1101
BseLI CCNNNNNNNGG 6 cut(s) 279, 304, 739, 740, 1042, 1085
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 4 cut(s) 311, 743, 878, 1001
BseNI ACTGG 3 cut(s) 294, 358, 1179
BseRI GAGGAG 6 cut(s) 87, 359, 431, 769, 794, 1254
BseSI GKGCMC 1 cut(s) 969
BseX3I CGGCCG 1 cut(s) 1125
BsgI GTGCAG 2 cut(s) 62, 683
Bsh1236I CGCG 2 cut(s) 861, 1130
Bsh1285I CGRYCG 1 cut(s) 1128
BshFI GGCC 2 cut(s) 357, 1127
BshTI ACCGGT 1 cut(s) 1158
BshVI ATCGAT 1 cut(s) 408
BsiEI CGRYCG 1 cut(s) 1128
BsiHKAI GWGCWC 2 cut(s) 703, 969
BsiSI CCGG 4 cut(s) 566, 620, 836, 1159
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 6 cut(s) 279, 304, 739, 740, 1042, 1085
BsmAI GTCTC 2 cut(s) 274, 1011
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 3 cut(s) 528, 676, 904
BsnI GGCC 2 cut(s) 357, 1127
Bsp1286I GDGCHC 2 cut(s) 703, 969
Bsp13I TCCGGA 1 cut(s) 835
Bsp1407I TGTACA 1 cut(s) 135
Bsp143I GATC 6 cut(s) 175, 405, 495, 832, 1131, 1168
Bsp19I CCATGG 1 cut(s) 374
BspACI CCGC 4 cut(s) 956, 982, 1079, 1128
BspANI GGCC 2 cut(s) 357, 1127
BspCNI CTCAG 4 cut(s) 312, 744, 879, 1002
BspDI ATCGAT 1 cut(s) 408
BspEI TCCGGA 1 cut(s) 835
BspFNI CGCG 2 cut(s) 861, 1130
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 2 cut(s) 297, 834
BspPI GGATC 2 cut(s) 827, 840
BspTI CTTAAG 1 cut(s) 935
BsrBI CCGCTC 1 cut(s) 982
BsrDI GCAATG 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 1158
BsrGI TGTACA 1 cut(s) 135
BsrI ACTGG 3 cut(s) 294, 358, 1179
BssAI RCCGGY 1 cut(s) 1158
BssECI CCNNGG 2 cut(s) 374, 620
BssMI GATC 6 cut(s) 175, 405, 495, 832, 1131, 1168
BssT1I CCWWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 842, 1052
Bst6I CTCTTC 1 cut(s) 674
BstAFI CTTAAG 1 cut(s) 935
BstAPI GCANNNNNTGC 1 cut(s) 964
BstAUI TGTACA 1 cut(s) 135
BstDEI CTNAG 5 cut(s) 320, 738, 752, 887, 1010
BstDSI CCRYGG 1 cut(s) 374
BstENI CCTNNNNNAGG 1 cut(s) 1040
BstF5I GGATG 9 cut(s) 252, 254, 574, 586, 616, 957, 985, 1075, 1101
BstFNI CGCG 2 cut(s) 861, 1130
BstHHI GCGC 1 cut(s) 861
BstKTI GATC 6 cut(s) 178, 408, 498, 835, 1134, 1171
BstMAI GTCTC 2 cut(s) 274, 1011
BstMBI GATC 6 cut(s) 175, 405, 495, 832, 1131, 1168
BstMCI CGRYCG 1 cut(s) 1128
BstMWI GCNNNNNNNGC 1 cut(s) 964
BstSCI CCNGG 2 cut(s) 564, 619
BstSLI GKGCMC 1 cut(s) 969
BstUI CGCG 2 cut(s) 861, 1130
BstX2I RGATCY 2 cut(s) 495, 832
BstYI RGATCY 2 cut(s) 495, 832
BstZI CGGCCG 1 cut(s) 1125
Bsu15I ATCGAT 1 cut(s) 408
BsuRI GGCC 2 cut(s) 357, 1127
BsuTUI ATCGAT 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 374
BtsCI GGATG 9 cut(s) 252, 254, 574, 586, 616, 957, 985, 1075, 1101
BtsI GCAGTG 2 cut(s) 533, 1026
BtsIMutI CAGTG 3 cut(s) 533, 847, 1026
CaiI CAGNNNCTG 1 cut(s) 398
CciI TCATGA 1 cut(s) 877
CfoI GCGC 1 cut(s) 861
Cfr10I RCCGGY 1 cut(s) 1158
Cfr13I GGNCC 2 cut(s) 295, 356
ClaI ATCGAT 1 cut(s) 408
Csp6I GTAC 3 cut(s) 136, 328, 1102
CspAI ACCGGT 1 cut(s) 1158
CviAII CATG 4 cut(s) 139, 301, 375, 878
CviQI GTAC 3 cut(s) 136, 328, 1102
DdeI CTNAG 5 cut(s) 320, 738, 752, 887, 1010
DpnI GATC 6 cut(s) 177, 407, 497, 834, 1133, 1170
DpnII GATC 6 cut(s) 175, 405, 495, 832, 1131, 1168
EaeI YGGCCR 1 cut(s) 1125
EagI CGGCCG 1 cut(s) 1125
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Ecl136II GAGCTC 1 cut(s) 701
EclXI CGGCCG 1 cut(s) 1125
Eco130I CCWWGG 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 295
Eco52I CGGCCG 1 cut(s) 1125
Eco53kI GAGCTC 1 cut(s) 701
EcoICRI GAGCTC 1 cut(s) 701
EcoNI CCTNNNNNAGG 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 374
EcoT22I ATGCAT 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 4 cut(s) 142, 304, 378, 881
FaiI YATR 9 cut(s) 140, 302, 376, 879, 945, 947, 993, 995, 1185
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 138, 300, 374, 877
FauNDI CATATG 2 cut(s) 945, 993
Fnu4HI GCNGC 3 cut(s) 956, 983, 1128
FokI GGATG 9 cut(s) 239, 261, 581, 593, 623, 964, 972, 1062, 1108
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 3 cut(s) 956, 983, 1128
GlaI GCGC 1 cut(s) 860
GluI GCNGC 3 cut(s) 956, 983, 1128
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 2 cut(s) 357, 1127
HapII CCGG 4 cut(s) 566, 620, 836, 1159
HhaI GCGC 1 cut(s) 861
Hin1II CATG 4 cut(s) 142, 304, 378, 881
Hin6I GCGC 1 cut(s) 859
HinP1I GCGC 1 cut(s) 859
HindIII AAGCTT 2 cut(s) 791, 923
HinfI GANTC 7 cut(s) 167, 283, 475, 889, 1058, 1121, 1178
HpaII CCGG 4 cut(s) 566, 620, 836, 1159
HphI GGTGA 1 cut(s) 1102
Hpy166II GTNNAC 3 cut(s) 136, 351, 967
Hpy188I TCNGA 9 cut(s) 265, 321, 480, 698, 705, 789, 853, 1011, 1234
Hpy188III TCNNGA 6 cut(s) 10, 220, 830, 836, 878, 1135
Hpy8I GTNNAC 3 cut(s) 136, 351, 967
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 4 cut(s) 82, 298, 342, 640
HpyCH4III ACNGT 2 cut(s) 842, 1052
HpyCH4IV ACGT 2 cut(s) 126, 801
HpyF10VI GCNNNNNNNGC 1 cut(s) 964
HpyF3I CTNAG 5 cut(s) 320, 738, 752, 887, 1010
HpySE526I ACGT 2 cut(s) 126, 801
Hsp92II CATG 4 cut(s) 142, 304, 378, 881
HspAI GCGC 1 cut(s) 859
Kpn2I TCCGGA 1 cut(s) 835
Kzo9I GATC 6 cut(s) 175, 405, 495, 832, 1131, 1168
LmnI GCTCC 2 cut(s) 698, 706
LweI GCATC 6 cut(s) 239, 261, 559, 942, 994, 1084
MaeII ACGT 2 cut(s) 126, 801
MaeIII GTNAC 1 cut(s) 3
MalI GATC 6 cut(s) 177, 407, 497, 834, 1133, 1170
MbiI CCGCTC 1 cut(s) 982
MboI GATC 6 cut(s) 175, 405, 495, 832, 1131, 1168
MboII GAAGA 8 cut(s) 160, 362, 691, 772, 866, 931, 1150, 1208
MflI RGATCY 2 cut(s) 495, 832
MhlI GDGCHC 2 cut(s) 703, 969
MluCI AATT 5 cut(s) 42, 223, 574, 1191, 1249
MlyI GAGTC 3 cut(s) 898, 1067, 1130
MmeI TCCRAC 1 cut(s) 756
Mph1103I ATGCAT 1 cut(s) 254
MroI TCCGGA 1 cut(s) 835
MseI TTAA 3 cut(s) 56, 201, 936
MspCI CTTAAG 1 cut(s) 935
MspI CCGG 4 cut(s) 566, 620, 836, 1159
MspR9I CCNGG 2 cut(s) 566, 621
Mva1269I GAATGC 3 cut(s) 528, 676, 904
MvnI CGCG 2 cut(s) 861, 1130
MwoI GCNNNNNNNGC 1 cut(s) 964
NciI CCSGG 2 cut(s) 566, 621
NcoI CCATGG 1 cut(s) 374
NdeI CATATG 2 cut(s) 945, 993
NdeII GATC 6 cut(s) 175, 405, 495, 832, 1131, 1168
NlaIII CATG 4 cut(s) 142, 304, 378, 881
NlaIV GGNNCC 2 cut(s) 297, 834
NsiI ATGCAT 1 cut(s) 254
PagI TCATGA 1 cut(s) 877
PctI GAATGC 3 cut(s) 528, 676, 904
PfeI GAWTC 4 cut(s) 167, 283, 475, 1178
PinAI ACCGGT 1 cut(s) 1158
PkrI GCNGC 3 cut(s) 957, 984, 1129
PleI GAGTC 3 cut(s) 897, 1066, 1129
PpsI GAGTC 3 cut(s) 897, 1066, 1129
PpuMI RGGWCCY 1 cut(s) 295
Psp124BI GAGCTC 1 cut(s) 703
Psp5II RGGWCCY 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 297, 834
PspPI GGNCC 2 cut(s) 295, 356
PspPPI RGGWCCY 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 2 cut(s) 495, 832
RsaI GTAC 3 cut(s) 137, 329, 1103
RsaNI GTAC 3 cut(s) 136, 328, 1102
SacI GAGCTC 1 cut(s) 703
SaqAI TTAA 3 cut(s) 56, 201, 936
SatI GCNGC 3 cut(s) 956, 983, 1128
Sau3AI GATC 6 cut(s) 175, 405, 495, 832, 1131, 1168
Sau96I GGNCC 2 cut(s) 295, 356
SchI GAGTC 3 cut(s) 898, 1067, 1130
ScrFI CCNGG 2 cut(s) 566, 621
SduI GDGCHC 2 cut(s) 703, 969
SfaNI GCATC 6 cut(s) 239, 261, 559, 942, 994, 1084
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 3 cut(s) 8, 218, 935
SmoI CTYRAG 3 cut(s) 8, 218, 935
Sse9I AATT 5 cut(s) 42, 223, 574, 1191, 1249
SsiI CCGC 4 cut(s) 956, 982, 1079, 1128
SspI AATATT 1 cut(s) 511
SstI GAGCTC 1 cut(s) 703
StyD4I CCNGG 2 cut(s) 564, 619
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 842, 1052
TaiI ACGT 2 cut(s) 129, 804
TaqI TCGA 6 cut(s) 129, 174, 335, 342, 408, 1171
TasI AATT 5 cut(s) 42, 223, 574, 1191, 1249
TatI WGTACW 2 cut(s) 135, 1101
TauI GCSGC 3 cut(s) 958, 985, 1130
TfiI GAWTC 4 cut(s) 167, 283, 475, 1178
Tru1I TTAA 3 cut(s) 56, 201, 936
Tru9I TTAA 3 cut(s) 56, 201, 936
TscAI CASTG 3 cut(s) 533, 847, 1033
TspDTI ATGAA 5 cut(s) 155, 317, 692, 866, 1112
TspGWI ACGGA 1 cut(s) 1202
TspRI CASTG 3 cut(s) 533, 847, 1033
Vha464I CTTAAG 1 cut(s) 935
VneI GTGCAC 1 cut(s) 965
VpaK11BI GGWCC 1 cut(s) 295
XagI CCTNNNNNAGG 1 cut(s) 1040
XapI RAATTY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.