Prupe.2G210300_v2.0.a1

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016659
Physical Location & Seq
Reverse (-)
24298928 .. 24300160
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G210300.1

Sequence Viewer

Length: 1233 bp
ATGTTATTCAACAAACCCACCTGCAGAACCCTAAAAAACCTCATCTTCCCCTCTGAACAAACAATCTTTTCCTTCCTGCGCCATCCCCATAACCCTCCTCACACATACACCCAGAAATTCAACTATGTCGATGTCTACATGAAATGGAAGAAAGACTCGTACTACGATTCAATCGAGCAAATTCACAAGTCCATAATGCTTAAACCCATCATCTCTCTCAAGAACTGCATTTCCCAGGACCCCGGTGGTTGCATCCCAATCTCTGATGTGTCCAAAAGGGGCATACAATTGGAGGTCCCCATGAAGGTTGCAAGGTTCTTGAGGCTCTACCCATCAATCTTTGAAGAGTTTACTGGTCCACAATACAATCTTCCCTGGTTTAGGTTGACCCCAGAAGCTGATGAGATTGATAGGGAGGAGAAAAGGGTTTATGAGGATTGCAGGGAGGACTTGAGGGATAGGTTGAAAAAGTTTATCCTGATGAGTAAAGAAAAGGTTTTGCCTTTGAAAATAATACGAGGAATGCAGTGGTATTTGGGTTTGCCTGATGATTTCTTGCAGCACCCGGATAAGAATCTGGATGAGTCTTTTAGGATTGTGGAGATGGAAGATGGGTTAAAGGGATTGGCTGTGGAGAGTGGTGAAAAGGTCTTGTCTACGGTGCAAAGGAATGCAATGAAAAAAGGGGTGTATGTTGGAGGTCCAATGGAGGCAATTGAGTTTCCTCTTTTCCCATCTAAGGGTTTGAGGTTGAGGAGGAAGATTGTGGACTGGTTAAAGGAGTTTCAGAAGCTTCCCTATGTTTCACCTTATGAGGAATTTTCGCATTTGGATCCGGATAGTGACATATCCGAAAAACGAGTTGTGGGGCTTCTTCATGAGTTGCTTAGTCTCTTTGTTGAGCATTCGGCGGAGAGGAAGAAGCTTCTGTGTCTTAAGAAGCACATGGGGCTGCCACAGAAGGTGCACAAAGCATTTGAGAGGCACCCCAGTATGTTTTATTTGTCTTTGAGGAACAAGACTTGTACAGCCATCCTTAAAGAGGCATACTGTGATGAATCTGCTATTCAGAGGCATCCACTTTTAAGTGTAAGGAATAAGTACATTAATTTGATGAGGGAATCGGCGACGATTTTTAAAACTAGGAGAGTGAATAGCCGGTTCGCTGATCGTTGGGATTCAGGTTCTGAGAATGAAGATGGAAAGGAGGTGTCAGATGTACTTAGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

411

Amino Acids

48.12

Weight (kDa)

9.05

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G39120
fragaria_vesca FvH4_7g08660
malus_domestica MD01G1105000.v1.1
prunus_persica Prupe.2G210300_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343651
rosa_laevigata RLG00000028956
rosa_multiflora Rmu_sc0000021.1_g000005 Rmu_sc0007600.1_g000003
rosa_roxburghii Rroxscaffold_4G00310400
rosa_rugosa Rorug01G0168100 Rorug01G0168200
rosa_samantha Rh1AG184100 Rh1CG171000
rosa_wichuraiana Rw1G015260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 984
AccI GTMKAC 2 cut(s) 135, 656
AccIII TCCGGA 1 cut(s) 835
AciI CCGC 1 cut(s) 911
AclWI GGATC 2 cut(s) 827, 840
AcsI RAATTY 3 cut(s) 116, 180, 818
AfaI GTAC 4 cut(s) 161, 1027, 1103, 1221
AfiI CCNNNNNNNGG 5 cut(s) 304, 381, 739, 740, 1042
AflII CTTAAG 1 cut(s) 935
AgsI TTSAA 6 cut(s) 10, 121, 171, 344, 466, 508
AjnI CCWGG 2 cut(s) 234, 374
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 3 cut(s) 398, 793, 925
AluI AGCT 3 cut(s) 398, 793, 925
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 1 cut(s) 896
Alw44I GTGCAC 1 cut(s) 965
AlwI GGATC 2 cut(s) 827, 840
AlwNI CAGNNNCTG 2 cut(s) 398, 1187
Aor13HI TCCGGA 1 cut(s) 835
ApaLI GTGCAC 1 cut(s) 965
ApeKI GCWGC 2 cut(s) 559, 952
ApoI RAATTY 3 cut(s) 116, 180, 818
AseI ATTAAT 1 cut(s) 1107
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 4 cut(s) 238, 295, 356, 701
AsuC2I CCSGG 2 cut(s) 243, 566
AsuHPI GGTGA 2 cut(s) 653, 798
AvaII GGWCC 4 cut(s) 238, 295, 356, 701
BaeGI GKGCMC 1 cut(s) 969
BamHI GGATCC 1 cut(s) 832
BanI GGYRCC 1 cut(s) 984
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 2 cut(s) 571, 939
BccI CCATC 8 cut(s) 90, 215, 340, 598, 605, 742, 1040, 1193
BciT130I CCWGG 2 cut(s) 236, 376
BcnI CCSGG 2 cut(s) 243, 566
BcoDI GTCTC 1 cut(s) 896
BfaI CTAG 1 cut(s) 1143
BfmI CTRYAG 1 cut(s) 22
BfrI CTTAAG 1 cut(s) 935
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 2 cut(s) 560, 953
BlsI GCNGC 2 cut(s) 561, 954
Bme1390I CCNGG 4 cut(s) 236, 243, 376, 566
Bme18I GGWCC 4 cut(s) 238, 295, 356, 701
BmgT120I GGNCC 4 cut(s) 238, 295, 356, 701
BmiI GGNNCC 4 cut(s) 240, 297, 834, 986
BmrFI CCNGG 4 cut(s) 236, 243, 376, 566
BmrI ACTGGG 1 cut(s) 984
BmsI GCATC 2 cut(s) 261, 1084
BmuI ACTGGG 1 cut(s) 984
BpuEI CTTGAG 3 cut(s) 203, 340, 472
BpuMI CCSGG 2 cut(s) 243, 566
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 3 cut(s) 234, 241, 374
BsaWI WCCGGW 1 cut(s) 835
Bsc4I CCNNNNNNNGG 5 cut(s) 304, 381, 739, 740, 1042
Bse118I RCCGGY 1 cut(s) 1158
Bse1I ACTGG 3 cut(s) 358, 776, 990
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 573
BseAI TCCGGA 1 cut(s) 835
BseBI CCWGG 2 cut(s) 236, 376
BseDI CCNNGG 3 cut(s) 234, 241, 374
BseGI GGATG 5 cut(s) 82, 252, 586, 1032, 1075
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 5 cut(s) 304, 381, 739, 740, 1042
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 1 cut(s) 1179
BseNI ACTGG 3 cut(s) 358, 776, 990
BseRI GAGGAG 3 cut(s) 87, 431, 769
BseSI GKGCMC 1 cut(s) 969
BseXI GCAGC 2 cut(s) 571, 939
BshNI GGYRCC 1 cut(s) 984
BsiHKAI GWGCWC 1 cut(s) 969
BsiSI CCGG 4 cut(s) 243, 566, 836, 1159
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 5 cut(s) 304, 381, 739, 740, 1042
BsmAI GTCTC 1 cut(s) 896
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 3 cut(s) 528, 676, 904
Bsp1286I GDGCHC 1 cut(s) 969
Bsp13I TCCGGA 1 cut(s) 835
Bsp1407I TGTACA 1 cut(s) 1025
Bsp143I GATC 2 cut(s) 832, 1168
BspACI CCGC 1 cut(s) 911
BspCNI CTCAG 1 cut(s) 1180
BspEI TCCGGA 1 cut(s) 835
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 4 cut(s) 240, 297, 834, 986
BspMAI CTGCAG 1 cut(s) 26
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 827, 840
BspT107I GGYRCC 1 cut(s) 984
BspTI CTTAAG 1 cut(s) 935
BsrDI GCAATG 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 1158
BsrGI TGTACA 1 cut(s) 1025
BsrI ACTGG 3 cut(s) 358, 776, 990
BssAI RCCGGY 1 cut(s) 1158
BssECI CCNNGG 3 cut(s) 234, 241, 374
BssMI GATC 2 cut(s) 832, 1168
Bst2UI CCWGG 2 cut(s) 236, 376
Bst4CI ACNGT 2 cut(s) 661, 1052
Bst6I CTCTTC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 935
BstAUI TGTACA 1 cut(s) 1025
BstDEI CTNAG 4 cut(s) 738, 887, 1188, 1223
BstENI CCTNNNNNAGG 2 cut(s) 379, 1040
BstF5I GGATG 5 cut(s) 82, 252, 586, 1032, 1075
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 2 cut(s) 835, 1171
BstMAI GTCTC 1 cut(s) 896
BstMBI GATC 2 cut(s) 832, 1168
BstMWI GCNNNNNNNGC 1 cut(s) 949
BstNI CCWGG 2 cut(s) 236, 376
BstSCI CCNGG 4 cut(s) 234, 241, 374, 564
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 969
BstV1I GCAGC 2 cut(s) 571, 939
BstX2I RGATCY 1 cut(s) 832
BstYI RGATCY 1 cut(s) 832
BtsCI GGATG 5 cut(s) 82, 252, 586, 1032, 1075
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 1 cut(s) 533
BveI ACCTGC 1 cut(s) 29
CaiI CAGNNNCTG 2 cut(s) 398, 1187
CciI TCATGA 1 cut(s) 877
CfoI GCGC 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 1158
Cfr13I GGNCC 4 cut(s) 238, 295, 356, 701
Csp6I GTAC 4 cut(s) 160, 1026, 1102, 1220
CviAII CATG 4 cut(s) 139, 301, 878, 946
CviJI RGCY 9 cut(s) 325, 398, 629, 793, 871, 925, 952, 1031, 1158
CviKI_1 RGCY 9 cut(s) 325, 398, 629, 793, 871, 925, 952, 1031, 1158
CviQI GTAC 4 cut(s) 160, 1026, 1102, 1220
DdeI CTNAG 4 cut(s) 738, 887, 1188, 1223
DpnI GATC 2 cut(s) 834, 1170
DpnII GATC 2 cut(s) 832, 1168
DraI TTTAAA 1 cut(s) 1138
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 926
Eco47I GGWCC 4 cut(s) 238, 295, 356, 701
EcoNI CCTNNNNNAGG 2 cut(s) 379, 1040
EcoO109I RGGNCCY 2 cut(s) 238, 295
EcoRII CCWGG 2 cut(s) 234, 374
FaeI CATG 4 cut(s) 142, 304, 881, 949
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 138, 300, 877, 945
FblI GTMKAC 2 cut(s) 135, 656
Fnu4HI GCNGC 2 cut(s) 560, 953
FokI GGATG 5 cut(s) 69, 239, 593, 1019, 1062
Fsp4HI GCNGC 2 cut(s) 560, 953
FspBI CTAG 1 cut(s) 1143
GlaI GCGC 1 cut(s) 80
GluI GCNGC 2 cut(s) 560, 953
HapII CCGG 4 cut(s) 243, 566, 836, 1159
HhaI GCGC 1 cut(s) 81
Hin1II CATG 4 cut(s) 142, 304, 881, 949
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HindIII AAGCTT 2 cut(s) 791, 923
HinfI GANTC 7 cut(s) 155, 167, 574, 584, 1058, 1121, 1178
HpaII CCGG 4 cut(s) 243, 566, 836, 1159
HphI GGTGA 2 cut(s) 653, 798
Hpy166II GTNNAC 7 cut(s) 136, 351, 359, 387, 657, 769, 967
Hpy188I TCNGA 7 cut(s) 55, 265, 789, 853, 1071, 1189, 1216
Hpy188III TCNNGA 6 cut(s) 220, 319, 478, 578, 836, 878
Hpy8I GTNNAC 7 cut(s) 136, 351, 359, 387, 657, 769, 967
Hpy99I CGWCG 1 cut(s) 1132
HpyAV CCTTC 3 cut(s) 82, 298, 955
HpyCH4III ACNGT 2 cut(s) 661, 1052
HpyF10VI GCNNNNNNNGC 1 cut(s) 949
HpyF3I CTNAG 4 cut(s) 738, 887, 1188, 1223
Hsp92II CATG 4 cut(s) 142, 304, 881, 949
HspAI GCGC 1 cut(s) 79
Kpn2I TCCGGA 1 cut(s) 835
Kzo9I GATC 2 cut(s) 832, 1168
Lsp1109I GCAGC 2 cut(s) 571, 939
LweI GCATC 2 cut(s) 261, 1084
MaeI CTAG 1 cut(s) 1143
MaeIII GTNAC 1 cut(s) 842
MalI GATC 2 cut(s) 834, 1170
MboI GATC 2 cut(s) 832, 1168
MboII GAAGA 9 cut(s) 37, 160, 356, 362, 620, 772, 866, 931, 1208
MfeI CAATTG 2 cut(s) 287, 714
MflI RGATCY 1 cut(s) 832
MhlI GDGCHC 1 cut(s) 969
MluCI AATT 6 cut(s) 116, 180, 287, 714, 818, 1108
MlyI GAGTC 2 cut(s) 149, 593
MmeI TCCRAC 1 cut(s) 676
MroI TCCGGA 1 cut(s) 835
MseI TTAA 8 cut(s) 201, 617, 776, 936, 1038, 1085, 1107, 1137
MspCI CTTAAG 1 cut(s) 935
MspI CCGG 4 cut(s) 243, 566, 836, 1159
MspR9I CCNGG 4 cut(s) 236, 243, 376, 566
MunI CAATTG 2 cut(s) 287, 714
Mva1269I GAATGC 3 cut(s) 528, 676, 904
MvaI CCWGG 2 cut(s) 236, 376
MwoI GCNNNNNNNGC 1 cut(s) 949
NciI CCSGG 2 cut(s) 243, 566
NdeII GATC 2 cut(s) 832, 1168
NlaIII CATG 4 cut(s) 142, 304, 881, 949
NlaIV GGNNCC 4 cut(s) 240, 297, 834, 986
NmuCI GTSAC 1 cut(s) 842
PagI TCATGA 1 cut(s) 877
PaqCI CACCTGC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 3 cut(s) 528, 676, 904
PfeI GAWTC 5 cut(s) 167, 574, 1058, 1121, 1178
PkrI GCNGC 2 cut(s) 561, 954
PleI GAGTC 2 cut(s) 149, 592
PpsI GAGTC 2 cut(s) 149, 592
PpuMI RGGWCCY 2 cut(s) 238, 295
PshBI ATTAAT 1 cut(s) 1107
Psp5II RGGWCCY 2 cut(s) 238, 295
Psp6I CCWGG 2 cut(s) 234, 374
PspGI CCWGG 2 cut(s) 234, 374
PspN4I GGNNCC 4 cut(s) 240, 297, 834, 986
PspPI GGNCC 4 cut(s) 238, 295, 356, 701
PspPPI RGGWCCY 2 cut(s) 238, 295
PstI CTGCAG 1 cut(s) 26
PstNI CAGNNNCTG 2 cut(s) 398, 1187
PsuI RGATCY 1 cut(s) 832
RsaI GTAC 4 cut(s) 161, 1027, 1103, 1221
RsaNI GTAC 4 cut(s) 160, 1026, 1102, 1220
SaqAI TTAA 8 cut(s) 201, 617, 776, 936, 1038, 1085, 1107, 1137
SatI GCNGC 2 cut(s) 560, 953
Sau3AI GATC 2 cut(s) 832, 1168
Sau96I GGNCC 4 cut(s) 238, 295, 356, 701
SchI GAGTC 2 cut(s) 149, 593
ScrFI CCNGG 4 cut(s) 236, 243, 376, 566
SduI GDGCHC 1 cut(s) 969
SfaNI GCATC 2 cut(s) 261, 1084
SfcI CTRYAG 1 cut(s) 22
SinI GGWCC 4 cut(s) 238, 295, 356, 701
SmlI CTYRAG 4 cut(s) 218, 319, 451, 935
SmoI CTYRAG 4 cut(s) 218, 319, 451, 935
Sse9I AATT 6 cut(s) 116, 180, 287, 714, 818, 1108
SsiI CCGC 1 cut(s) 911
SspMI CTAG 1 cut(s) 1143
StyD4I CCNGG 4 cut(s) 234, 241, 374, 564
TaaI ACNGT 2 cut(s) 661, 1052
TaqI TCGA 2 cut(s) 129, 174
TasI AATT 6 cut(s) 116, 180, 287, 714, 818, 1108
TatI WGTACW 3 cut(s) 1025, 1101, 1219
TfiI GAWTC 5 cut(s) 167, 574, 1058, 1121, 1178
Tru1I TTAA 8 cut(s) 201, 617, 776, 936, 1038, 1085, 1107, 1137
Tru9I TTAA 8 cut(s) 201, 617, 776, 936, 1038, 1085, 1107, 1137
TscAI CASTG 1 cut(s) 533
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 2 cut(s) 559, 952
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 6 cut(s) 155, 317, 692, 866, 1071, 1209
TspRI CASTG 1 cut(s) 533
Vha464I CTTAAG 1 cut(s) 935
VneI GTGCAC 1 cut(s) 965
VpaK11BI GGWCC 4 cut(s) 238, 295, 356, 701
VspI ATTAAT 1 cut(s) 1107
XagI CCTNNNNNAGG 2 cut(s) 379, 1040
XapI RAATTY 3 cut(s) 116, 180, 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 242
XmiI GTMKAC 2 cut(s) 135, 656
XspI CTAG 1 cut(s) 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.