Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013458

Physical Location & Seq

Genomic Coordinates Forward (+)

9341447 .. 9343117

Gene Structure 1671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGTCCCTCCCCAAAACCCTGTTGAACCTCCTCTCCCACCACTTCTCCACTGCCGCCACAACCGCCAAAAGGCTCCCAAAAGTCCCCAATGTCCCCACCAAGTACAAGTCCGAAGCTCTCAACCAAGCCCAGAAGGTCCTCACCGACTACCTCCACACCACCCGGTCCCTCCCCTACACCTACGCCGAGCACATCAGCAACCACTCCCTCTTCTCCCTCTCCAATCTCGTCAAGAACATCCCCTACTCCGCCCCCAACTTCTCCAGAAGCTTCCAGCGCTTCCTCAGGTACCACCCCATTAACGAATTCGAGTTTTTCTTCGAAAGCATTGGCATTCACCACACCCAGCTCTCTCATTTCTTACCCACCAACAAGTTCTTCCTCTCGGAGGACCAGACTGTTCTGGAAGCCGCTTGTGTGCTCAGTGCGTTCGGGTTTCCGTGGAACATGTTGGGGAAGTTGTATAGGGAGGAGCATTGTATATTTAGGGAGAGTTGTAACGAGTTGAAAGGTAGGCTTAGTGGGTTTAAGGAGTGTGGGTGGAGTAATCTTTCGGTTGTGGGGATGTGCTTGGCTTTCCCAATGTTGTTGCGTGTCGATGGGGAGTTTAGTGGTGAGGTTGTGGGGTTGTTGGATGATTTGAAGAGGGTTTTTGTGGAGTTTGACATTGCGAATAGTGTTGAGGGAAATGTGGATACTTGGTATGGGGTTTGTAGGATGGTGAGGGTGTTTTATGATTTGGGTGTCGAAAAGGGGAAGGTGGGAGAGTTGTTGGGTAGGAAGAAAGATGTTTTTCTTCAGCACTCAGAAGAAGTGTTGGTTGAGAAAGTAAATTATTTTTGTAGATTAGGTGTTAGGAAGGAGGATGTAGGTTTGTTGATTCTTCAAAGACCGGAAGTTTTGAGTCTTGAACTGGAAAAGCCGGTGATATCGACTATGGGGTTGTTGAGACATTTAGGATTGGATGAGAATGAGTTGAAGGAAGTCAGTCGGAAATATTCGTATGTGATGGGGAGAAATAGAATGGTTAATGTACCTCATTTGATGAGGGCTTTGGATCTTCATGTGTGGTTCTTCACTAGGATTAAGGATGAACATCAATTGCTAGGTAGTTATGTACTTAGTGATTCTGATGAAGATGACGTGAAGAAAGAATTTAGTAGTGGATTCGAGCAGTTGCAATCTTGTAGAACTCCTGTTCATGCAATGAAGAAATTGGATTTCATGCATAGCATTGGGTTTGGAGAGAACCCTTTGACTCTAAAGGTCTTGACCCGCATACATGGAAGAAGCTGTGAGTTACAAAAGCGGTTTGATATCCTTCTTAATGCAGGGCTTGAATTTTCACAGCTGTGTTTGATTATAAGCACAACACCGAAAATCCTGAATCAGAACCCAGAATATCTTGAAGCGAAAATAATCTTTCTTTGCGGTGAAATGAAGTCCTCATTAAAGTACTTTAATGTTTTTCCAGCATTTTTGTGTTTTGATTTGGAGAACCGGATTAAGCCAAGATACAGATTTTATGCATGGCTTCAAGAGAAAGGTTTGCACCCTGAAGGTTATTCCTTTGCAACCATGATTGCTACCAGTGAAAAGAGATTTGTAGCACAGGCTTTTACAATCCACCCAGCTGCTCCAAAACATTGGTTTGAGTGTTTCCTGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

557

Amino Acids

64.16

Weight (kDa)

8.12

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	239 - 340	1.7e-12	mTERF
mTERF	PF02536	433 - 535	2.5e-14	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60400
fragaria_vesca	FvH4_7g09760
malus_domestica	MD00G1041100.v1.1 MD09G1283700.v1.1
prunus_persica	Prupe.2G125600_v2.0.a1
pyrus_communis	pycom02g18190 pycom09g19160
rosa_chinensis	RchiOBHm_Chr1g0346761
rosa_laevigata	RLG00000028781
rosa_multiflora	Rmu_sc0003232.1_g000007
rosa_roxburghii	Rroxscaffold_4G00308420
rosa_rugosa	Rorug01G0182700 Rorug01G0182800
rosa_samantha	Rh1AG201200 Rh1BG167400 Rh1CG185900 Rh1DG198200
rosa_wichuraiana	Rw1G016860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1364
Acc65I	GGTACC	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	288
AciI	CCGC	7 cut(s)	54, 63, 249, 411, 1276, 1309, 1431
AclWI	GGATC	1 cut(s)	1065
AcsI	RAATTY	3 cut(s)	305, 1154, 1340
AcuI	CTGAAG	2 cut(s)	782, 1578
AfaI	GTAC	5 cut(s)	104, 290, 1035, 1119, 1457
AfeI	AGCGCT	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	69, 388
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	9 cut(s)	25, 508, 643, 887, 911, 979, 1340, 1409, 1538
AjiI	CACGTC	1 cut(s)	1144
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AleI	CACNNNNGTG	1 cut(s)	1351
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	6 cut(s)	116, 270, 349, 1293, 1351, 1634
AluI	AGCT	6 cut(s)	116, 270, 349, 1293, 1351, 1634
Alw21I	GWGCWC	2 cut(s)	192, 423
Alw26I	GTCTC	1 cut(s)	943
AlwI	GGATC	1 cut(s)	1065
Aor51HI	AGCGCT	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	1634
ApoI	RAATTY	3 cut(s)	305, 1154, 1340
Asp718I	GGTACC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	136, 165, 391
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	6 cut(s)	133, 329, 626, 733, 937, 1445
AsuII	TTCGAA	1 cut(s)	321
AvaII	GGWCC	3 cut(s)	136, 165, 391
AxyI	CCTNAGG	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	192, 423
BbvI	GCAGC	1 cut(s)	1621
BccI	CCATC	3 cut(s)	593, 712, 1003
BciVI	GTATCC	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	943
BfaI	CTAG	2 cut(s)	1080, 1106
BfoI	RGCGCY	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	688
BisI	GCNGC	3 cut(s)	54, 411, 1635
BlsI	GCNGC	3 cut(s)	55, 412, 1636
BmcAI	AGTACT	1 cut(s)	1457
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	3 cut(s)	136, 165, 391
BmgBI	CACGTC	1 cut(s)	1144
BmgT120I	GGNCC	3 cut(s)	136, 165, 391
BmiI	GGNNCC	3 cut(s)	74, 167, 290
BmrFI	CCNGG	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	1095
BsaJI	CCNNGG	1 cut(s)	440
BsaWI	WCCGGW	2 cut(s)	892, 1500
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 29, 47, 59, 524, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 388
Bse118I	RCCGGY	1 cut(s)	922
Bse1I	ACTGG	2 cut(s)	918, 1590
Bse21I	CCTNAGG	1 cut(s)	284
Bse3DI	GCAATG	2 cut(s)	666, 1212
Bse8I	GATNNNNATC	1 cut(s)	1095
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	7 cut(s)	237, 570, 640, 723, 871, 970, 1096
BseJI	GATNNNNATC	1 cut(s)	1095
BseLI	CCNNNNNNNGG	2 cut(s)	69, 388
BseMI	GCAATG	2 cut(s)	666, 1212
BseMII	CTCAG	3 cut(s)	298, 436, 819
BseNI	ACTGG	2 cut(s)	918, 1590
BseRI	GAGGAG	2 cut(s)	20, 485
BseXI	GCAGC	1 cut(s)	1621
BseYI	CCCAGC	2 cut(s)	345, 1630
BshNI	GGYRCC	1 cut(s)	288
BsiHKAI	GWGCWC	2 cut(s)	192, 423
BsiSI	CCGG	4 cut(s)	163, 893, 923, 1501
BslFI	GGGAC	3 cut(s)	68, 77, 151
BslI	CCNNNNNNNGG	2 cut(s)	69, 388
BsmAI	GTCTC	1 cut(s)	943
BsmFI	GGGAC	3 cut(s)	68, 77, 151
BsmI	GAATGC	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	192, 423
Bsp143I	GATC	1 cut(s)	1057
BspACI	CCGC	7 cut(s)	54, 63, 249, 411, 1276, 1309, 1431
BspCNI	CTCAG	3 cut(s)	297, 435, 818
BspLI	GGNNCC	3 cut(s)	74, 167, 290
BspPI	GGATC	1 cut(s)	1065
BspT104I	TTCGAA	1 cut(s)	321
BspT107I	GGYRCC	1 cut(s)	288
BsrDI	GCAATG	2 cut(s)	666, 1212
BsrFI	RCCGGY	1 cut(s)	922
BsrI	ACTGG	2 cut(s)	918, 1590
BssAI	RCCGGY	1 cut(s)	922
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	1 cut(s)	1057
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	2 cut(s)	215, 638
BstBI	TTCGAA	1 cut(s)	321
BstDEI	CTNAG	5 cut(s)	284, 422, 518, 805, 1121
BstDSI	CCRYGG	1 cut(s)	440
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	7 cut(s)	237, 570, 640, 723, 871, 970, 1096
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	1 cut(s)	1060
BstMAI	GTCTC	1 cut(s)	943
BstMBI	GATC	1 cut(s)	1057
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 276
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	1621
BstX2I	RGATCY	1 cut(s)	1057
BstXI	CCANNNNNNTGG	1 cut(s)	1647
BstYI	RGATCY	1 cut(s)	1057
Bsu36I	CCTNAGG	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	688
BtgI	CCRYGG	1 cut(s)	440
BtrI	CACGTC	1 cut(s)	1144
BtsCI	GGATG	7 cut(s)	237, 570, 640, 723, 871, 970, 1096
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	3 cut(s)	48, 430, 1597
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	922
Cfr13I	GGNCC	3 cut(s)	136, 165, 391
Csp6I	GTAC	5 cut(s)	103, 289, 1034, 1118, 1456
CviAII	CATG	7 cut(s)	448, 1064, 1202, 1225, 1283, 1530, 1579
CviQI	GTAC	5 cut(s)	103, 289, 1034, 1118, 1456
DdeI	CTNAG	5 cut(s)	284, 422, 518, 805, 1121
DpnI	GATC	1 cut(s)	1059
DpnII	GATC	1 cut(s)	1057
Eam1104I	CTCTTC	2 cut(s)	215, 638
EarI	CTCTTC	2 cut(s)	215, 638
EciI	GGCGGA	1 cut(s)	238
Eco32I	GATATC	2 cut(s)	930, 1318
Eco47I	GGWCC	3 cut(s)	136, 165, 391
Eco47III	AGCGCT	1 cut(s)	278
Eco57I	CTGAAG	2 cut(s)	782, 1578
Eco81I	CCTNAGG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	305
EcoRV	GATATC	2 cut(s)	930, 1318
EcoT22I	ATGCAT	2 cut(s)	1230, 1531
FaeI	CATG	7 cut(s)	451, 1067, 1205, 1228, 1286, 1533, 1582
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	3 cut(s)	68, 77, 151
FatI	CATG	7 cut(s)	447, 1063, 1201, 1224, 1282, 1529, 1578
FauI	CCCGC	1 cut(s)	1283
Fnu4HI	GCNGC	3 cut(s)	54, 411, 1635
FokI	GGATG	7 cut(s)	224, 577, 647, 730, 878, 977, 1103
Fsp4HI	GCNGC	3 cut(s)	54, 411, 1635
FspBI	CTAG	2 cut(s)	1080, 1106
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	3 cut(s)	54, 411, 1635
GsaI	CCCAGC	2 cut(s)	349, 1634
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	280
HapII	CCGG	4 cut(s)	163, 893, 923, 1501
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	7 cut(s)	451, 1067, 1205, 1228, 1286, 1533, 1582
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	6 cut(s)	880, 904, 1127, 1167, 1258, 1387
HpaII	CCGG	4 cut(s)	163, 893, 923, 1501
HphI	GGTGA	6 cut(s)	133, 329, 626, 733, 937, 1445
Hpy188I	TCNGA	6 cut(s)	112, 388, 808, 993, 1132, 1392
Hpy188III	TCNNGA	9 cut(s)	232, 264, 404, 908, 1270, 1384, 1406, 1538, 1663
HpyAV	CCTTC	6 cut(s)	127, 751, 853, 973, 1331, 1553
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	1143
HpyCH4V	TGCA	7 cut(s)	1180, 1205, 1228, 1331, 1529, 1552, 1574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 276
HpyF3I	CTNAG	5 cut(s)	284, 422, 518, 805, 1121
HpySE526I	ACGT	1 cut(s)	1143
Hsp92II	CATG	7 cut(s)	451, 1067, 1205, 1228, 1286, 1533, 1582
HspAI	GCGC	1 cut(s)	277
KpnI	GGTACC	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	1057
LmnI	GCTCC	3 cut(s)	78, 472, 1642
Lsp1109I	GCAGC	1 cut(s)	1621
MaeI	CTAG	2 cut(s)	1080, 1106
MaeII	ACGT	1 cut(s)	1143
MaeIII	GTNAC	2 cut(s)	497, 1299
MalI	GATC	1 cut(s)	1059
MboI	GATC	1 cut(s)	1057
MfeI	CAATTG	1 cut(s)	1100
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	2 cut(s)	192, 423
MluCI	AATT	6 cut(s)	305, 832, 1100, 1154, 1214, 1340
MlyI	GAGTC	2 cut(s)	913, 1252
MmeI	TCCRAC	2 cut(s)	612, 971
Mph1103I	ATGCAT	2 cut(s)	1230, 1531
MseI	TTAA	8 cut(s)	300, 528, 1029, 1086, 1326, 1451, 1461, 1506
MslI	CAYNNNNRTG	2 cut(s)	1351, 1480
MspA1I	CMGCKG	2 cut(s)	1351, 1634
MspI	CCGG	4 cut(s)	163, 893, 923, 1501
MspR9I	CCNGG	1 cut(s)	163
MunI	CAATTG	1 cut(s)	1100
Mva1269I	GAATGC	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	62, 276
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	1057
NlaIII	CATG	7 cut(s)	451, 1067, 1205, 1228, 1286, 1533, 1582
NlaIV	GGNNCC	3 cut(s)	74, 167, 290
NmeAIII	GCCGAG	1 cut(s)	211
NsiI	ATGCAT	2 cut(s)	1230, 1531
NspI	RCATGY	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	321
OliI	CACNNNNGTG	1 cut(s)	1351
PciI	ACATGT	1 cut(s)	447
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	4 cut(s)	880, 1127, 1167, 1387
PkrI	GCNGC	3 cut(s)	55, 412, 1636
PleI	GAGTC	2 cut(s)	912, 1252
PpsI	GAGTC	2 cut(s)	912, 1252
PpuMI	RGGWCCY	1 cut(s)	136
PscI	ACATGT	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	1364
Psp5II	RGGWCCY	1 cut(s)	136
PspFI	CCCAGC	2 cut(s)	345, 1630
PspN4I	GGNNCC	3 cut(s)	74, 167, 290
PspPI	GGNCC	3 cut(s)	136, 165, 391
PspPPI	RGGWCCY	1 cut(s)	136
PsrI	GAACNNNNNNTAC	2 cut(s)	227, 259
PsuI	RGATCY	1 cut(s)	1057
PvuII	CAGCTG	2 cut(s)	1351, 1634
RsaI	GTAC	5 cut(s)	104, 290, 1035, 1119, 1457
RsaNI	GTAC	5 cut(s)	103, 289, 1034, 1118, 1456
RseI	CAYNNNNRTG	2 cut(s)	1351, 1480
SaqAI	TTAA	8 cut(s)	300, 528, 1029, 1086, 1326, 1451, 1461, 1506
SatI	GCNGC	3 cut(s)	54, 411, 1635
Sau3AI	GATC	1 cut(s)	1057
Sau96I	GGNCC	3 cut(s)	136, 165, 391
ScaI	AGTACT	1 cut(s)	1457
SchI	GAGTC	2 cut(s)	913, 1252
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	192, 423
SfuI	TTCGAA	1 cut(s)	321
SinI	GGWCC	3 cut(s)	136, 165, 391
SmiMI	CAYNNNNRTG	2 cut(s)	1351, 1480
Sse9I	AATT	6 cut(s)	305, 832, 1100, 1154, 1214, 1340
SsiI	CCGC	7 cut(s)	54, 63, 249, 411, 1276, 1309, 1431
SspI	AATATT	1 cut(s)	998
SspMI	CTAG	2 cut(s)	1080, 1106
StyD4I	CCNGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	1146
TaqI	TCGA	6 cut(s)	309, 321, 597, 747, 932, 1170
TasI	AATT	6 cut(s)	305, 832, 1100, 1154, 1214, 1340
TatI	WGTACW	3 cut(s)	102, 1117, 1455
TauI	GCSGC	2 cut(s)	56, 413
TfiI	GAWTC	4 cut(s)	880, 1127, 1167, 1387
Tru1I	TTAA	8 cut(s)	300, 528, 1029, 1086, 1326, 1451, 1461, 1506
Tru9I	TTAA	8 cut(s)	300, 528, 1029, 1086, 1326, 1451, 1461, 1506
TscAI	CASTG	3 cut(s)	55, 430, 1597
TseI	GCWGC	1 cut(s)	1634
TspDTI	ATGAA	7 cut(s)	1052, 1107, 1149, 1190, 1213, 1223, 1454
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	3 cut(s)	55, 430, 1597
VpaK11BI	GGWCC	3 cut(s)	136, 165, 391
XagI	CCTNNNNNAGG	1 cut(s)	386
XapI	RAATTY	3 cut(s)	305, 1154, 1340
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	2 cut(s)	1080, 1106
ZrmI	AGTACT	1 cut(s)	1457
Zsp2I	ATGCAT	2 cut(s)	1230, 1531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.