Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0013458

Physical Location & Seq

Genomic Coordinates Forward (+)

37480143 .. 37481807

Gene Structure 1665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGCCCCTCCCCAAATCCCTCTTCACGCTCCTCTCTCACCACTTCTCCACTGCCGCCAAAACCACCACAAACCTCCCAAAAGTCCCCAATGTCCCCACCAAGTACAAGTCCGAAGCCATCAACCAAGCCCAGAAAGTCCTCACTGACTACCTCCACACCACCAGGTCCCTACCCTACACCTACGCCGAGCACATCAGCAAGAACGCCCTCTTCTCCCTCTCCAATCTCGTCAAGAAGGTCCCCTACTCGTTCCTCAGGTACCACCCCATCAATGAATTTGAGTTTTTCTTTGAAAGCATTGGCATAGACTACCCCCAAGTCTGTGAGTTTTTACCCACCAATAAGTTTTTCTTTTCGGAAGACGAGACTGTTTTGGATGCTGCTTGTGTGCTAGCGGTTTCGGGTTTCCGTGGAACATGTTGGGGAAAGTTCGAGGAGTTGAAAGCTAGGCTTTGTGGGTTTAAGGAGTATGGGTGGAGTAATCTTTCGGTTGTGGGAATGTGCTTGGCTTTCCCTCGGTTGTTGCGCGTCGACGGGGAATTGGGTGGGGAGGTTGTGGCATTGTTGGATGATTTGAAGAGGGTTTTTGTGGAGTTTGATATTGGAAATTGTGTTGAGGGAAATGTGGATACTTGGTATGAGGTTTGTAGGACGGTGAGGCTGTTGGGTAGGAAGAAAGATATTTTTCTTCAACACCCGGAAGAGGTGTTGGTTCGGAAAGCTAACTACTTCTGTAGATTAGGTGTTAGGAAGGAGGATGTAGGTTTATTGCTTCTTCAAAGACCGGAAGTTTTGAATCTTGAACTGGAAAAAACGGTGATATCAACTTTGGGATTGTTGAAACATTTAGGATTGAATGAGAATGAATTGAAGGAAGTGAGTCAAAGATATCCTTTTGCGATGGGAAGAAATAGAATGGTCAATGTACCTCATTTGATGAGGGCTTTGGATCTTCATGATGATTCTGATGAAGAACACATGAAGAAAGAATTTAGTAATGGATTGGAGCAGTTCCAATCTTGTAAAACTCCTGTTCATGCAATGAAGAAATTGAATTTCATGCATGGCATTGGCTTTGGAGAGAACCCTTTGACTCTGAAGGTCTTGGCCCGCATACATGGCAGAAGCAGTGAGTTACAAAAGCGGTTTGATATCCTTCTTAATGCAGGGCTTGAATTCTCACAGCTTTGTTTGATTATAAGCACAGCACCAAAAATCCTGAATCAGAACCCAGAATATCTTGAAGAGAAAGTAAACTTTCTCTGCGGTGAAATGAAATCCTCGTTGGAGTACCTCAATGTTTTTCCAGCATTTTTGTGTTTTGATTTGGAGAACCGGATTAAGCCTAGATACAGATTTTATGCATGGCTTAAAGAGAAGGGTTTGCATCCTGAAAGTTATTCCTTTGCAACCATGATTGCTACTAGTGAAAAGAGATTTGTAGCGCAGGCCTTTACAATCCACCCAGCTGCGCCAAAACATTGGTTTGAGTGTTTCCTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0032502 GO:0034622 GO:0034641 GO:0042254 GO:0042255 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

501

Amino Acids

57.63

Weight (kDa)

7.89

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	235 - 304	2.4e-08	mTERF
mTERF	PF02536	376 - 480	1.6e-16	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60400
fragaria_vesca	FvH4_7g09760
malus_domestica	MD00G1041100.v1.1 MD09G1283700.v1.1
prunus_persica	Prupe.2G125600_v2.0.a1
pyrus_communis	pycom02g18190 pycom09g19160
rosa_chinensis	RchiOBHm_Chr1g0346761
rosa_laevigata	RLG00000028781
rosa_multiflora	Rmu_sc0003232.1_g000007
rosa_roxburghii	Rroxscaffold_4G00308420
rosa_rugosa	Rorug01G0182700 Rorug01G0182800
rosa_samantha	Rh1AG201200 Rh1BG167400 Rh1CG185900 Rh1DG198200
rosa_wichuraiana	Rw1G016860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1199
Acc65I	GGTACC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	531
AccII	CGCG	1 cut(s)	528
AciI	CCGC	5 cut(s)	54, 395, 1111, 1144, 1266
AclWI	GGATC	1 cut(s)	957
AcsI	RAATTY	4 cut(s)	275, 989, 1054, 1175
AcuI	CTGAAG	1 cut(s)	1118
AfaI	GTAC	4 cut(s)	104, 260, 927, 1292
AfiI	CCNNNNNNNGG	1 cut(s)	703
AflIII	ACRYGT	1 cut(s)	416
AhlI	ACTAGT	1 cut(s)	1424
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	5 cut(s)	37, 332, 364, 1268, 1300
AluBI	AGCT	4 cut(s)	446, 722, 1186, 1469
AluI	AGCT	4 cut(s)	446, 722, 1186, 1469
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	957
AoxI	GGCC	2 cut(s)	1107, 1449
ApeKI	GCWGC	2 cut(s)	380, 1469
ApoI	RAATTY	4 cut(s)	275, 989, 1054, 1175
Asp718I	GGTACC	1 cut(s)	258
AspLEI	GCGC	3 cut(s)	528, 1447, 1474
AspS9I	GGNCC	3 cut(s)	165, 238, 1108
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	4 cut(s)	29, 667, 829, 1280
AsuNHI	GCTAGC	1 cut(s)	391
AvaII	GGWCC	2 cut(s)	165, 238
AxyI	CCTNAGG	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	258
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	367, 1456
BccI	CCATC	3 cut(s)	125, 275, 895
BciT130I	CCWGG	1 cut(s)	163
BciVI	GTATCC	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	1 cut(s)	359
BcuI	ACTAGT	1 cut(s)	1424
BfaI	CTAG	4 cut(s)	392, 447, 1347, 1425
BfmI	CTRYAG	1 cut(s)	733
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	54, 381, 1470
BlsI	GCNGC	3 cut(s)	55, 382, 1471
Bme1390I	CCNGG	2 cut(s)	163, 698
Bme18I	GGWCC	2 cut(s)	165, 238
BmgT120I	GGNCC	3 cut(s)	165, 238, 1108
BmiI	GGNNCC	3 cut(s)	167, 240, 260
BmrFI	CCNGG	2 cut(s)	163, 698
BmsI	GCATC	2 cut(s)	367, 1396
BmtI	GCTAGC	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	698
BsaJI	CCNNGG	2 cut(s)	409, 515
BsaWI	WCCGGW	2 cut(s)	784, 1335
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	703
Bse1I	ACTGG	1 cut(s)	810
Bse21I	CCTNAGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	1047
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	409, 515
BseGI	GGATG	4 cut(s)	382, 574, 763, 1387
BseLI	CCNNNNNNNGG	1 cut(s)	703
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	810
BseRI	GAGGAG	2 cut(s)	20, 449
BseXI	GCAGC	2 cut(s)	367, 1456
BseYI	CCCAGC	1 cut(s)	1465
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	1109, 1451
BshNI	GGYRCC	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	698, 785, 1336
BslFI	GGGAC	4 cut(s)	68, 77, 151, 224
BslI	CCNNNNNNNGG	1 cut(s)	703
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	4 cut(s)	68, 77, 151, 224
BsnI	GGCC	2 cut(s)	1109, 1451
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	949
BspACI	CCGC	5 cut(s)	54, 395, 1111, 1144, 1266
BspANI	GGCC	2 cut(s)	1109, 1451
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	528
BspHI	TCATGA	1 cut(s)	955
BspLI	GGNNCC	3 cut(s)	167, 240, 260
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	957
BspT107I	GGYRCC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	1047
BsrI	ACTGG	1 cut(s)	810
BssECI	CCNNGG	2 cut(s)	409, 515
BssMI	GATC	1 cut(s)	949
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	370, 655, 817
Bst6I	CTCTTC	5 cut(s)	26, 215, 572, 696, 1239
BstC8I	GCNNGC	3 cut(s)	393, 1111, 1449
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	4 cut(s)	382, 574, 763, 1387
BstFNI	CGCG	1 cut(s)	528
BstHHI	GCGC	3 cut(s)	528, 1447, 1474
BstKTI	GATC	1 cut(s)	952
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	949
BstMWI	GCNNNNNNNGC	1 cut(s)	1119
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	161, 696
BstSFI	CTRYAG	1 cut(s)	733
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	367, 1456
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	949
BstXI	CCANNNNNNTGG	1 cut(s)	1482
BstYI	RGATCY	1 cut(s)	949
Bsu36I	CCTNAGG	1 cut(s)	254
BsuI	GTATCC	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	1109, 1451
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	914
BtsCI	GGATG	4 cut(s)	382, 574, 763, 1387
BtsI	GCAGTG	2 cut(s)	48, 1135
BtsIMutI	CAGTG	3 cut(s)	48, 141, 1135
Cac8I	GCNNGC	3 cut(s)	393, 1111, 1449
CciI	TCATGA	1 cut(s)	955
CfoI	GCGC	3 cut(s)	528, 1447, 1474
Cfr13I	GGNCC	3 cut(s)	165, 238, 1108
CseI	GACGC	1 cut(s)	517
CsiI	ACCWGGT	1 cut(s)	161
Csp6I	GTAC	4 cut(s)	103, 259, 926, 1291
CviAII	CATG	9 cut(s)	417, 956, 979, 1037, 1060, 1064, 1118, 1365, 1414
CviQI	GTAC	4 cut(s)	103, 259, 926, 1291
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	1 cut(s)	951
DpnII	GATC	1 cut(s)	949
Eam1104I	CTCTTC	5 cut(s)	26, 215, 572, 696, 1239
EarI	CTCTTC	5 cut(s)	26, 215, 572, 696, 1239
Eco147I	AGGCCT	1 cut(s)	1451
Eco32I	GATATC	3 cut(s)	822, 890, 1153
Eco47I	GGWCC	2 cut(s)	165, 238
Eco57I	CTGAAG	1 cut(s)	1118
Eco81I	CCTNAGG	1 cut(s)	254
EcoO109I	RGGNCCY	2 cut(s)	165, 238
EcoRI	GAATTC	1 cut(s)	1175
EcoRII	CCWGG	1 cut(s)	161
EcoRV	GATATC	3 cut(s)	822, 890, 1153
EcoT22I	ATGCAT	2 cut(s)	1065, 1366
FaeI	CATG	9 cut(s)	420, 959, 982, 1040, 1063, 1067, 1121, 1368, 1417
FalI	AAGNNNNNCTT	6 cut(s)	335, 367, 435, 467, 877, 909
FaqI	GGGAC	4 cut(s)	68, 77, 151, 224
FatI	CATG	9 cut(s)	416, 955, 978, 1036, 1059, 1063, 1117, 1364, 1413
FauI	CCCGC	1 cut(s)	1118
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	54, 381, 1470
FokI	GGATG	4 cut(s)	389, 581, 770, 1374
Fsp4HI	GCNGC	3 cut(s)	54, 381, 1470
FspBI	CTAG	4 cut(s)	392, 447, 1347, 1425
GlaI	GCGC	3 cut(s)	527, 1446, 1473
GluI	GCNGC	3 cut(s)	54, 381, 1470
GsaI	CCCAGC	1 cut(s)	1469
HaeIII	GGCC	2 cut(s)	1109, 1451
HapII	CCGG	3 cut(s)	698, 785, 1336
HgaI	GACGC	1 cut(s)	517
HhaI	GCGC	3 cut(s)	528, 1447, 1474
Hin1II	CATG	9 cut(s)	420, 959, 982, 1040, 1063, 1067, 1121, 1368, 1417
Hin6I	GCGC	3 cut(s)	526, 1445, 1472
HinP1I	GCGC	3 cut(s)	526, 1445, 1472
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	5 cut(s)	796, 880, 962, 1093, 1222
HpaII	CCGG	3 cut(s)	698, 785, 1336
HphI	GGTGA	4 cut(s)	29, 667, 829, 1280
Hpy166II	GTNNAC	2 cut(s)	532, 1255
Hpy188I	TCNGA	6 cut(s)	112, 358, 717, 967, 1098, 1227
Hpy188III	TCNNGA	6 cut(s)	232, 800, 956, 1219, 1241, 1391
Hpy8I	GTNNAC	2 cut(s)	532, 1255
Hpy99I	CGWCG	2 cut(s)	533, 536
HpyAV	CCTTC	6 cut(s)	229, 745, 865, 1093, 1166, 1372
HpyCH4III	ACNGT	3 cut(s)	370, 655, 817
HpyCH4V	TGCA	6 cut(s)	1040, 1063, 1166, 1364, 1387, 1409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1119
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	9 cut(s)	420, 959, 982, 1040, 1063, 1067, 1121, 1368, 1417
HspAI	GCGC	3 cut(s)	526, 1445, 1472
KpnI	GGTACC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	949
LmnI	GCTCC	2 cut(s)	33, 1006
Lsp1109I	GCAGC	2 cut(s)	367, 1456
LweI	GCATC	2 cut(s)	367, 1396
MabI	ACCWGGT	1 cut(s)	161
MaeI	CTAG	4 cut(s)	392, 447, 1347, 1425
MaeIII	GTNAC	1 cut(s)	1134
MalI	GATC	1 cut(s)	951
MboI	GATC	1 cut(s)	949
MflI	RGATCY	1 cut(s)	949
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	8 cut(s)	275, 539, 607, 866, 989, 1049, 1054, 1175
MlyI	GAGTC	2 cut(s)	889, 1087
MmeI	TCCRAC	2 cut(s)	546, 1266
Mph1103I	ATGCAT	2 cut(s)	1065, 1366
MseI	TTAA	4 cut(s)	462, 1161, 1341, 1371
MslI	CAYNNNNRTG	1 cut(s)	1315
MspA1I	CMGCKG	1 cut(s)	1469
MspI	CCGG	3 cut(s)	698, 785, 1336
MspR9I	CCNGG	2 cut(s)	163, 698
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	1119
NciI	CCSGG	1 cut(s)	698
NdeII	GATC	1 cut(s)	949
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	9 cut(s)	420, 959, 982, 1040, 1063, 1067, 1121, 1368, 1417
NlaIV	GGNNCC	3 cut(s)	167, 240, 260
NmeAIII	GCCGAG	1 cut(s)	211
NsiI	ATGCAT	2 cut(s)	1065, 1366
NspI	RCATGY	1 cut(s)	420
PagI	TCATGA	1 cut(s)	955
PceI	AGGCCT	1 cut(s)	1451
PciI	ACATGT	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	796, 962, 1222
PkrI	GCNGC	3 cut(s)	55, 382, 1471
PleI	GAGTC	2 cut(s)	888, 1087
PpsI	GAGTC	2 cut(s)	888, 1087
PpuMI	RGGWCCY	2 cut(s)	165, 238
PscI	ACATGT	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	1199
Psp5II	RGGWCCY	2 cut(s)	165, 238
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	1465
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	167, 240, 260
PspPI	GGNCC	3 cut(s)	165, 238, 1108
PspPPI	RGGWCCY	2 cut(s)	165, 238
PsuI	RGATCY	1 cut(s)	949
PvuII	CAGCTG	1 cut(s)	1469
RsaI	GTAC	4 cut(s)	104, 260, 927, 1292
RsaNI	GTAC	4 cut(s)	103, 259, 926, 1291
RseI	CAYNNNNRTG	1 cut(s)	1315
SalI	GTCGAC	1 cut(s)	530
SaqAI	TTAA	4 cut(s)	462, 1161, 1341, 1371
SatI	GCNGC	3 cut(s)	54, 381, 1470
Sau3AI	GATC	1 cut(s)	949
Sau96I	GGNCC	3 cut(s)	165, 238, 1108
SchI	GAGTC	2 cut(s)	889, 1087
ScrFI	CCNGG	2 cut(s)	163, 698
SduI	GDGCHC	1 cut(s)	192
SexAI	ACCWGGT	1 cut(s)	161
SfaNI	GCATC	2 cut(s)	367, 1396
SfcI	CTRYAG	1 cut(s)	733
SgrDI	CGTCGACG	1 cut(s)	530
SinI	GGWCC	2 cut(s)	165, 238
SmiMI	CAYNNNNRTG	1 cut(s)	1315
SpeI	ACTAGT	1 cut(s)	1424
Sse9I	AATT	8 cut(s)	275, 539, 607, 866, 989, 1049, 1054, 1175
SseBI	AGGCCT	1 cut(s)	1451
SsiI	CCGC	5 cut(s)	54, 395, 1111, 1144, 1266
SspMI	CTAG	4 cut(s)	392, 447, 1347, 1425
StuI	AGGCCT	1 cut(s)	1451
StyD4I	CCNGG	2 cut(s)	161, 696
TaaI	ACNGT	3 cut(s)	370, 655, 817
TaqI	TCGA	2 cut(s)	432, 531
TasI	AATT	8 cut(s)	275, 539, 607, 866, 989, 1049, 1054, 1175
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	796, 962, 1222
Tru1I	TTAA	4 cut(s)	462, 1161, 1341, 1371
Tru9I	TTAA	4 cut(s)	462, 1161, 1341, 1371
TscAI	CASTG	3 cut(s)	55, 148, 1135
TseI	GCWGC	2 cut(s)	380, 1469
TspDTI	ATGAA	9 cut(s)	288, 879, 944, 984, 995, 1025, 1048, 1058, 1289
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	3 cut(s)	55, 148, 1135
VpaK11BI	GGWCC	2 cut(s)	165, 238
XapI	RAATTY	4 cut(s)	275, 989, 1054, 1175
XceI	RCATGY	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	531
XspI	CTAG	4 cut(s)	392, 447, 1347, 1425
Zsp2I	ATGCAT	2 cut(s)	1065, 1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.