FvH4_7g11140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016613
Physical Location & Seq
Forward (+)
10418910 .. 10419541
632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11140.t1

Sequence Viewer

Length: 525 bp
ATGGATCTTAATATCTCAACCTGCACTACTCATCCTCTATATCTTTGTCTTCTTCTATGCTTGCTTTCTTTGCATGCATGTAGTGCCCGCCGTCTTGCTGCGGTTGATCATGATCCTAACGAGTCTTTGAAGAAGCTTCATTTCACCAACAAGGGTACTGATGTTAACATTGCAGGCGTGCCTAAAGTGAAATCTTTCTCGTCATCAAAGCCGGTTCTTGAAGTGACAGAAGGATCAGAAATCACGGTGGAGACGGAAGCTGATAGCGATGATAGTACTACAGAAGAAAGACCTATACAGTACCACACAAAAGCTGCCTTCAACACGAAGAATGTCTCGTCTAGAAAAAGGAAAGGATCAACCTCATCCTCAAATGCTGCAGATGATCAGAAGACAACGACGAGGTCTGGTCAGCCAGTTTCAGTTTCATGGCGAGTGCCAAGGAAGAAACGAGGGATTCAGAAGCAACCAGGGTTTAATCTGGACTACTCACCCCCAAAGACACACCCGCCTCATCATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.17

Weight (kDa)

9.21

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016613)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60650
fragaria_vesca FvH4_7g11140
malus_domestica MD07G1116200.v1.1
prunus_persica Prupe.2G138500_v2.0.a1
rosa_laevigata RLG00000028599
rosa_multiflora Rmu_sc0003385.1_g000027 Rmu_ssc0000150.1_g000013
rosa_roxburghii Rroxscaffold_4G00306050
rosa_rugosa Rorug01G0201200
rosa_samantha Rh1AG218600 Rh1BG184000 Rh1CG203100 Rh1DG213800
rosa_wichuraiana Rw1G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AciI CCGC 3 cut(s) 88, 101, 509
AclWI GGATC 4 cut(s) 12, 107, 241, 364
AfaI GTAC 3 cut(s) 157, 277, 302
AgsI TTSAA 3 cut(s) 130, 221, 322
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 3 cut(s) 136, 260, 314
AluI AGCT 3 cut(s) 136, 260, 314
Alw26I GTCTC 2 cut(s) 245, 340
AlwI GGATC 4 cut(s) 12, 107, 241, 364
ApeKI GCWGC 3 cut(s) 98, 314, 377
Asp700I GAANNNNTTC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 136, 483
BaeGI GKGCMC 1 cut(s) 88
BaeI ACNNNNGTAYC 2 cut(s) 147, 180
BbsI GAAGAC 2 cut(s) 41, 398
BbvI GCAGC 3 cut(s) 85, 301, 364
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 471
BclI TGATCA 2 cut(s) 106, 385
BcoDI GTCTC 2 cut(s) 245, 340
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 2 cut(s) 279, 378
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 3 cut(s) 99, 315, 378
BlsI GCNGC 3 cut(s) 100, 316, 379
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 1 cut(s) 471
BmrFI CCNGG 1 cut(s) 471
BpiI GAAGAC 2 cut(s) 41, 398
BsaBI GATNNNNATC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 440, 470
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 168
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 2 cut(s) 440, 470
BseGI GGATG 2 cut(s) 31, 365
BseJI GATNNNNATC 1 cut(s) 111
BseMI GCAATG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 416
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 3 cut(s) 85, 301, 364
BsgI GTGCAG 1 cut(s) 7
BsiSI CCGG 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 245, 340
BsmBI CGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 6 cut(s) 4, 106, 112, 233, 356, 385
BspACI CCGC 3 cut(s) 88, 101, 509
BspHI TCATGA 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 4 cut(s) 12, 107, 241, 364
BsrDI GCAATG 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 440, 470
BssMI GATC 6 cut(s) 4, 106, 112, 233, 356, 385
BssT1I CCWWGG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 2 cut(s) 247, 300
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 5 cut(s) 62, 75, 88, 175, 179
BstF5I GGATG 2 cut(s) 31, 365
BstKTI GATC 6 cut(s) 7, 109, 115, 236, 359, 388
BstMAI GTCTC 2 cut(s) 245, 340
BstMBI GATC 6 cut(s) 4, 106, 112, 233, 356, 385
BstMWI GCNNNNNNNGC 2 cut(s) 70, 83
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 2 cut(s) 77, 81
BstSCI CCNGG 1 cut(s) 469
BstSFI CTRYAG 2 cut(s) 279, 378
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 3 cut(s) 85, 301, 364
BstV2I GAAGAC 2 cut(s) 41, 398
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgZI GCGATG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 31, 365
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 5 cut(s) 62, 75, 88, 175, 179
CciI TCATGA 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 211
Csp6I GTAC 3 cut(s) 156, 276, 301
CviAII CATG 4 cut(s) 74, 78, 110, 429
CviJI RGCY 5 cut(s) 136, 211, 260, 314, 415
CviKI_1 RGCY 5 cut(s) 136, 211, 260, 314, 415
CviQI GTAC 3 cut(s) 156, 276, 301
DpnI GATC 6 cut(s) 6, 108, 114, 235, 358, 387
DpnII GATC 6 cut(s) 4, 106, 112, 233, 356, 385
Eco130I CCWWGG 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 440
EcoT22I ATGCAT 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 440
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 4 cut(s) 77, 81, 113, 432
FaiI YATR 8 cut(s) 40, 58, 75, 79, 111, 296, 430, 519
FatI CATG 4 cut(s) 73, 77, 109, 428
FauI CCCGC 2 cut(s) 95, 516
FbaI TGATCA 2 cut(s) 106, 385
Fnu4HI GCNGC 3 cut(s) 99, 315, 378
FokI GGATG 2 cut(s) 18, 352
Fsp4HI GCNGC 3 cut(s) 99, 315, 378
FspBI CTAG 1 cut(s) 342
GluI GCNGC 3 cut(s) 99, 315, 378
HapII CCGG 1 cut(s) 212
Hin1II CATG 4 cut(s) 77, 81, 113, 432
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 2 cut(s) 122, 457
HpaI GTTAAC 1 cut(s) 166
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 136, 483
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 3 cut(s) 238, 390, 462
Hpy188III TCNNGA 4 cut(s) 110, 218, 342, 482
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 2 cut(s) 224, 328
HpyCH4III ACNGT 2 cut(s) 247, 300
HpyCH4V TGCA 5 cut(s) 24, 73, 77, 173, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 83
Hsp92II CATG 4 cut(s) 77, 81, 113, 432
Ksp22I TGATCA 2 cut(s) 106, 385
KspAI GTTAAC 1 cut(s) 166
Kzo9I GATC 6 cut(s) 4, 106, 112, 233, 356, 385
LpnPI CCDG 8 cut(s) 34, 159, 225, 393, 429, 456, 467, 483
Lsp1109I GCAGC 3 cut(s) 85, 301, 364
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 223
MalI GATC 6 cut(s) 6, 108, 114, 235, 358, 387
MboI GATC 6 cut(s) 4, 106, 112, 233, 356, 385
MboII GAAGA 7 cut(s) 41, 44, 142, 296, 340, 403, 457
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 88
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 6 cut(s) 45, 373, 379, 396, 446, 522
Mph1103I ATGCAT 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 3 cut(s) 9, 165, 477
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 70, 83
NdeII GATC 6 cut(s) 4, 106, 112, 233, 356, 385
NlaIII CATG 4 cut(s) 77, 81, 113, 432
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 2 cut(s) 77, 81
PaeI GCATGC 1 cut(s) 77
PagI TCATGA 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 457
PflFI GACNNNGTC 1 cut(s) 403
PkrI GCNGC 3 cut(s) 100, 316, 379
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PstI CTGCAG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 403
RsaI GTAC 3 cut(s) 157, 277, 302
RsaNI GTAC 3 cut(s) 156, 276, 301
SaqAI TTAA 3 cut(s) 9, 165, 477
SatI GCNGC 3 cut(s) 99, 315, 378
Sau3AI GATC 6 cut(s) 4, 106, 112, 233, 356, 385
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 1 cut(s) 88
SetI ASST 7 cut(s) 23, 138, 262, 295, 316, 365, 407
SfcI CTRYAG 2 cut(s) 279, 378
SphI GCATGC 1 cut(s) 77
SsiI CCGC 3 cut(s) 88, 101, 509
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 469
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 2 cut(s) 247, 300
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 3 cut(s) 9, 165, 477
Tru9I TTAA 3 cut(s) 9, 165, 477
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 3 cut(s) 98, 314, 377
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 128, 417
TspGWI ACGGA 1 cut(s) 269
Tth111I GACNNNGTC 1 cut(s) 403
XbaI TCTAGA 1 cut(s) 341
XceI RCATGY 2 cut(s) 77, 81
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.