Prupe.2G138500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016613
Physical Location & Seq
Forward (+)
19558805 .. 19560384
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G138500.1

Sequence Viewer

Length: 492 bp
ATGTCAACAAGTACTAGTGCTCATTGCCTTCTTCTTTTCCTTCTTTGCCTTTCTTTGCATGCATGTAATGCCCGGCGTCTCGGTGCGGTTGAGAAGAAGCCTGAAAACAAACTTCATCTCGTCAACAAGAGTACTAAAGAAAAGGGTTCTGATGATAACATTCCAGCTGTGGCAAAGGTGAAGTCTTTCTCATCAAAGGCAGCACCTGAAGTGGCAAAAGAACGAAGCACAGCAGAGACTCACAGTGATAACAGTATCAACACTAAGGAGCCCACGCACACGAAAGCCAGTGATGTATCAAGAAAAACAAAGAGGTCGGCCTCAGGTGCTGTTGAACATCATCCAACAACTGTAGATGCTGATGATGATAACAAGTCGTCTTTCGATTCGGTTTCATGGCGTGTTCCCCACAAGAAACGTGAAGTTCAGAAACAACCAGGGTTCAATCTGGACTACTCACCCCCAAAGACACACCCTCCTTCTCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.87

Weight (kDa)

9.38

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016613)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60650
fragaria_vesca FvH4_7g11140
malus_domestica MD07G1116200.v1.1
prunus_persica Prupe.2G138500_v2.0.a1
rosa_laevigata RLG00000028599
rosa_multiflora Rmu_sc0003385.1_g000027 Rmu_ssc0000150.1_g000013
rosa_roxburghii Rroxscaffold_4G00306050
rosa_rugosa Rorug01G0201200
rosa_samantha Rh1AG218600 Rh1BG184000 Rh1CG203100 Rh1DG213800
rosa_wichuraiana Rw1G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 76
AfaI GTAC 2 cut(s) 13, 133
AgsI TTSAA 2 cut(s) 335, 445
AhlI ACTAGT 1 cut(s) 14
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 2 cut(s) 83, 230
AlwNI CAGNNNCTG 2 cut(s) 206, 329
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
Asp700I GAANNNNTTC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 190, 450
AxyI CCTNAGG 1 cut(s) 322
BanII GRGCYC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 438
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 83, 230
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmcAI AGTACT 2 cut(s) 13, 133
Bme1390I CCNGG 2 cut(s) 73, 438
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 73, 438
BmsI GCATC 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 437
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bse1I ACTGG 1 cut(s) 288
Bse21I CCTNAGG 1 cut(s) 322
Bse3DI GCAATG 1 cut(s) 22
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 437
BseGI GGATG 1 cut(s) 340
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 83, 230
BsmBI CGTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 22, 273
BspACI CCGC 1 cut(s) 86
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 22
BsrI ACTGG 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 437
BssNI GRCGYC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 3 cut(s) 245, 254, 352
BstACI GRCGYC 1 cut(s) 76
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 264, 322
BstF5I GGATG 1 cut(s) 340
BstMAI GTCTC 2 cut(s) 83, 230
BstMWI GCNNNNNNNGC 2 cut(s) 68, 326
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 2 cut(s) 62, 66
BstSCI CCNGG 2 cut(s) 71, 436
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 212
Bsu36I CCTNAGG 1 cut(s) 322
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 250, 295
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 2 cut(s) 206, 329
CseI GACGC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 12, 132
CviAII CATG 3 cut(s) 59, 63, 396
CviJI RGCY 5 cut(s) 100, 167, 271, 287, 320
CviKI_1 RGCY 5 cut(s) 100, 167, 271, 287, 320
CviQI GTAC 2 cut(s) 12, 132
DdeI CTNAG 2 cut(s) 264, 322
Eco24I GRGCYC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 228
Eco81I CCTNAGG 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 3 cut(s) 62, 66, 399
FaiI YATR 3 cut(s) 60, 64, 397
FatI CATG 3 cut(s) 58, 62, 395
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 15
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 73
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 76
Hin1II CATG 3 cut(s) 62, 66, 399
HincII GTYRAC 2 cut(s) 6, 124
HindII GTYRAC 2 cut(s) 6, 124
HinfI GANTC 2 cut(s) 238, 386
HpaII CCGG 1 cut(s) 73
HphI GGTGA 2 cut(s) 190, 450
Hpy166II GTNNAC 2 cut(s) 6, 124
Hpy188I TCNGA 2 cut(s) 151, 429
Hpy188III TCNNGA 2 cut(s) 300, 449
Hpy8I GTNNAC 2 cut(s) 6, 124
HpyAV CCTTC 3 cut(s) 38, 50, 489
HpyCH4III ACNGT 3 cut(s) 245, 254, 352
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 2 cut(s) 58, 62
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 326
HpyF3I CTNAG 2 cut(s) 264, 322
HpySE526I ACGT 1 cut(s) 418
Hsp92I GRCGYC 1 cut(s) 76
Hsp92II CATG 3 cut(s) 62, 66, 399
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 9 cut(s) 86, 114, 177, 219, 301, 309, 423, 434, 450
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 418
MboII GAAGA 2 cut(s) 23, 106
MhlI GDGCHC 2 cut(s) 22, 273
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 3 cut(s) 306, 331, 486
Mph1103I ATGCAT 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 2 cut(s) 73, 438
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 68, 326
NciI CCSGG 1 cut(s) 73
NlaIII CATG 3 cut(s) 62, 66, 399
NlaIV GGNNCC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 64
NspI RCATGY 2 cut(s) 62, 66
PaeI GCATGC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 270
PstNI CAGNNNCTG 2 cut(s) 206, 329
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 2 cut(s) 13, 133
RsaNI GTAC 2 cut(s) 12, 132
SatI GCNGC 1 cut(s) 201
ScaI AGTACT 2 cut(s) 13, 133
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 2 cut(s) 73, 438
SduI GDGCHC 2 cut(s) 22, 273
SetI ASST 6 cut(s) 169, 180, 208, 317, 328, 421
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 351
SpeI ACTAGT 1 cut(s) 14
SphI GCATGC 1 cut(s) 62
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 71, 436
TaaI ACNGT 3 cut(s) 245, 254, 352
TaiI ACGT 1 cut(s) 421
TaqI TCGA 1 cut(s) 384
TatI WGTACW 2 cut(s) 11, 131
TfiI GAWTC 1 cut(s) 386
TscAI CASTG 2 cut(s) 250, 295
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 104, 384
TspRI CASTG 2 cut(s) 250, 295
XceI RCATGY 2 cut(s) 62, 66
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 1 cut(s) 15
ZrmI AGTACT 2 cut(s) 13, 133
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.