Rh1CG203100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016613
Physical Location & Seq
Forward (+)
43983778 .. 43984401
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG203100.1

Sequence Viewer

Length: 519 bp
ATGTCGACCTGCACTACTTATCACTGTCCTCTATATCTTTTTCTTCTTCTTCTATGCCTGCTTTCTTTGCATGCATGTAGTGCCCGGCGTCTTGCTGGGGTTGATGATCCTAACAAGTCTTCGGAAAAGCTTCACTTCACCAACAAGGGTACTGATGTTAACATTACAGTTGTCCCGAAAGTGAAATCTTTCTCTTCATCAAAGCCGGTTCTTGAAGTTACAGAAGGATCAGAAATCACGGTGGAGACGGAACCCGATAGCGATGATAGTACTAGAGAAGAAAGTCCTAAACGGTACCACACAAAAGCTGCCTCCAATGTGAAGAATGTCTCATCGAGAAAAAGGAAAGGATCAACCTCATCATCCTCAAGTGCTGCAGATCAGAAGTCGAAGACGAGGTCTGATCAGAAGGTTTCAGTTTCATGGCGAGTGCCGCGAAACAAAAGAGGGATTCAGAAGCAACCAGGGTTTAATCTGGACTATTCACCCCCGAAGACACACCCTCCTTCTCATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.01

Weight (kDa)

9.58

Isoelectric Point (pI)

67.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016613)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60650
fragaria_vesca FvH4_7g11140
malus_domestica MD07G1116200.v1.1
prunus_persica Prupe.2G138500_v2.0.a1
rosa_laevigata RLG00000028599
rosa_multiflora Rmu_sc0003385.1_g000027 Rmu_ssc0000150.1_g000013
rosa_roxburghii Rroxscaffold_4G00306050
rosa_rugosa Rorug01G0201200
rosa_samantha Rh1AG218600 Rh1BG184000 Rh1CG203100 Rh1DG213800
rosa_wichuraiana Rw1G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
Acc65I GGTACC 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 294
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 436
AciI CCGC 1 cut(s) 434
AclWI GGATC 3 cut(s) 101, 235, 358
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 3 cut(s) 151, 271, 296
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 463
AluBI AGCT 2 cut(s) 130, 308
AluI AGCT 2 cut(s) 130, 308
Alw26I GTCTC 2 cut(s) 239, 334
AlwI GGATC 3 cut(s) 101, 235, 358
ApeKI GCWGC 2 cut(s) 308, 374
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
Asp700I GAANNNNTTC 2 cut(s) 129, 188
Asp718I GGTACC 1 cut(s) 294
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 130, 477
BaeGI GKGCMC 1 cut(s) 85
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BanI GGYRCC 1 cut(s) 294
BbsI GAAGAC 3 cut(s) 111, 398, 500
BbvI GCAGC 2 cut(s) 295, 361
BciT130I CCWGG 1 cut(s) 465
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 239, 334
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 3 cut(s) 309, 375, 434
BlsI GCNGC 3 cut(s) 310, 376, 435
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 85, 465
BmiI GGNNCC 2 cut(s) 252, 296
BmrFI CCNGG 2 cut(s) 85, 465
BpiI GAAGAC 3 cut(s) 111, 398, 500
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bse118I RCCGGY 1 cut(s) 205
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 2 cut(s) 295, 361
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 436
BshNI GGYRCC 1 cut(s) 294
BsiSI CCGG 2 cut(s) 85, 206
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 239, 334
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 5 cut(s) 106, 227, 350, 379, 403
BspACI CCGC 1 cut(s) 434
BspFNI CGCG 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 252, 296
BspMAI CTGCAG 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 3 cut(s) 101, 235, 358
BspT107I GGYRCC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 5 cut(s) 106, 227, 350, 379, 403
BssNI GRCGYC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 4 cut(s) 26, 169, 241, 294
Bst6I CTCTTC 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 59, 72
BstF5I GGATG 1 cut(s) 362
BstFNI CGCG 1 cut(s) 436
BstKTI GATC 5 cut(s) 109, 230, 353, 382, 406
BstMAI GTCTC 2 cut(s) 239, 334
BstMBI GATC 5 cut(s) 106, 227, 350, 379, 403
BstMWI GCNNNNNNNGC 3 cut(s) 67, 80, 433
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 2 cut(s) 74, 78
BstSCI CCNGG 2 cut(s) 83, 463
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 2 cut(s) 295, 361
BstV2I GAAGAC 3 cut(s) 111, 398, 500
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 22
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 59, 72
Cfr10I RCCGGY 1 cut(s) 205
CseI GACGC 1 cut(s) 77
Csp6I GTAC 3 cut(s) 150, 270, 295
CviAII CATG 3 cut(s) 71, 75, 423
CviJI RGCY 3 cut(s) 130, 205, 308
CviKI_1 RGCY 3 cut(s) 130, 205, 308
CviQI GTAC 3 cut(s) 150, 270, 295
DpnI GATC 5 cut(s) 108, 229, 352, 381, 405
DpnII GATC 5 cut(s) 106, 227, 350, 379, 403
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 3 cut(s) 74, 78, 426
FaiI YATR 6 cut(s) 34, 55, 72, 76, 424, 513
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 70, 74, 422
FbaI TGATCA 1 cut(s) 403
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 309, 375, 434
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 3 cut(s) 309, 375, 434
FspBI CTAG 1 cut(s) 273
GluI GCNGC 3 cut(s) 309, 375, 434
GsaI CCCAGC 1 cut(s) 99
HapII CCGG 2 cut(s) 85, 206
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 3 cut(s) 74, 78, 426
HincII GTYRAC 2 cut(s) 6, 160
HindII GTYRAC 2 cut(s) 6, 160
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 451
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 2 cut(s) 85, 206
HphI GGTGA 2 cut(s) 130, 477
Hpy166II GTNNAC 2 cut(s) 6, 160
Hpy188I TCNGA 6 cut(s) 124, 232, 384, 403, 408, 456
Hpy188III TCNNGA 4 cut(s) 175, 212, 336, 476
Hpy8I GTNNAC 2 cut(s) 6, 160
HpyAV CCTTC 3 cut(s) 218, 403, 516
HpyCH4III ACNGT 4 cut(s) 26, 169, 241, 294
HpyCH4V TGCA 4 cut(s) 12, 70, 74, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 80, 433
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 3 cut(s) 74, 78, 426
KpnI GGTACC 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 403
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 5 cut(s) 106, 227, 350, 379, 403
LpnPI CCDG 8 cut(s) 22, 71, 81, 98, 219, 450, 461, 477
Lsp1109I GCAGC 2 cut(s) 295, 361
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 217
MalI GATC 5 cut(s) 108, 229, 352, 381, 405
MboI GATC 5 cut(s) 106, 227, 350, 379, 403
MboII GAAGA 9 cut(s) 35, 38, 41, 111, 186, 290, 334, 403, 505
MhlI GDGCHC 1 cut(s) 85
MnlI CCTC 7 cut(s) 39, 322, 367, 376, 390, 440, 513
Mph1103I ATGCAT 1 cut(s) 76
MroXI GAANNNNTTC 2 cut(s) 129, 188
MseI TTAA 2 cut(s) 159, 471
MspI CCGG 2 cut(s) 85, 206
MspR9I CCNGG 2 cut(s) 85, 465
MvaI CCWGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 3 cut(s) 67, 80, 433
NciI CCSGG 1 cut(s) 85
NdeII GATC 5 cut(s) 106, 227, 350, 379, 403
NlaIII CATG 3 cut(s) 74, 78, 426
NlaIV GGNNCC 2 cut(s) 252, 296
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 2 cut(s) 74, 78
PaeI GCATGC 1 cut(s) 74
PdmI GAANNNNTTC 2 cut(s) 129, 188
PfeI GAWTC 1 cut(s) 451
PflFI GACNNNGTC 1 cut(s) 397
PkrI GCNGC 3 cut(s) 310, 376, 435
Psp6I CCWGG 1 cut(s) 463
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 2 cut(s) 252, 296
PstI CTGCAG 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 397
RsaI GTAC 3 cut(s) 151, 271, 296
RsaNI GTAC 3 cut(s) 150, 270, 295
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 159, 471
SatI GCNGC 3 cut(s) 309, 375, 434
Sau3AI GATC 5 cut(s) 106, 227, 350, 379, 403
ScaI AGTACT 1 cut(s) 271
ScrFI CCNGG 2 cut(s) 85, 465
SduI GDGCHC 1 cut(s) 85
SetI ASST 6 cut(s) 11, 132, 310, 359, 401, 414
SfcI CTRYAG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SphI GCATGC 1 cut(s) 74
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 83, 463
TaaI ACNGT 4 cut(s) 26, 169, 241, 294
TaqI TCGA 3 cut(s) 5, 335, 389
TatI WGTACW 1 cut(s) 269
TauI GCSGC 1 cut(s) 436
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 2 cut(s) 159, 471
Tru9I TTAA 2 cut(s) 159, 471
TscAI CASTG 1 cut(s) 29
TseI GCWGC 2 cut(s) 308, 374
TspDTI ATGAA 2 cut(s) 186, 411
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 397
XceI RCATGY 2 cut(s) 74, 78
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 129, 188
XspI CTAG 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.