Rh1DG213800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016613
Physical Location & Seq
Forward (+)
41545318 .. 41546420
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG213800.1

Sequence Viewer

Length: 516 bp
ATGTCGACCTGCACTACTCATCACTGTCCTCTATATCTTTTTCTTCTTCTTCTATGCCTGCTTTCTTTGCATGCATGTAGTGCCCGGCGTCTTGCTGGGGTTGATGATCCTAACAAGTCTTCGGAAAAGCTTCACTTCACCAACAAGGGTACTGATGTTAACATTACAGTTGTGCCGAAAGTGAAATCTTTCTCGTCATCAAAGCCGGTTCTTGAAGTTACAGAAGGATCAGAAATCACGGTGGAGACGGAACCCGATAGCGATGATAGTACTAGAGAAGAAAGTCCTAAACGGTACCACACAAAAGCTGCCCCCAATGTGAAGAATGTCTCATCGAGAAAAAGGAAAGGATCAACCTCATCATCCTCAAGTGCAGATCAGAAGTCGAAGACGAGGTCTGATCAGCATGTTTCAGTTTCATGGCGAGTGCCGCGAAACAAACGAGGGATTCAGAAGCAACCAGGGTTTAATCTGGACTATTCACCCCCGAAGACACACCCTCCTTCTCATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.93

Weight (kDa)

9.54

Isoelectric Point (pI)

68.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016613)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60650
fragaria_vesca FvH4_7g11140
malus_domestica MD07G1116200.v1.1
prunus_persica Prupe.2G138500_v2.0.a1
rosa_laevigata RLG00000028599
rosa_multiflora Rmu_sc0003385.1_g000027 Rmu_ssc0000150.1_g000013
rosa_roxburghii Rroxscaffold_4G00306050
rosa_rugosa Rorug01G0201200
rosa_samantha Rh1AG218600 Rh1BG184000 Rh1CG203100 Rh1DG213800
rosa_wichuraiana Rw1G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
Acc65I GGTACC 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 294
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 433
AciI CCGC 1 cut(s) 431
AclWI GGATC 3 cut(s) 101, 235, 358
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 3 cut(s) 151, 271, 296
AgsI TTSAA 1 cut(s) 215
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 2 cut(s) 130, 308
AluI AGCT 2 cut(s) 130, 308
Alw26I GTCTC 2 cut(s) 239, 334
AlwI GGATC 3 cut(s) 101, 235, 358
ApeKI GCWGC 1 cut(s) 308
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
Asp700I GAANNNNTTC 2 cut(s) 129, 188
Asp718I GGTACC 1 cut(s) 294
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 130, 474
BaeGI GKGCMC 1 cut(s) 85
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BanI GGYRCC 1 cut(s) 294
BbsI GAAGAC 3 cut(s) 111, 395, 497
BbvI GCAGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 462
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 239, 334
BfaI CTAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 2 cut(s) 309, 431
BlsI GCNGC 2 cut(s) 310, 432
BmcAI AGTACT 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 85, 462
BmiI GGNNCC 2 cut(s) 252, 296
BmrFI CCNGG 2 cut(s) 85, 462
BpiI GAAGAC 3 cut(s) 111, 395, 497
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bse118I RCCGGY 1 cut(s) 205
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 294
BsiSI CCGG 2 cut(s) 85, 206
BsmAI GTCTC 2 cut(s) 239, 334
BsmBI CGTCTC 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 5 cut(s) 106, 227, 350, 376, 400
BspACI CCGC 1 cut(s) 431
BspFNI CGCG 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 252, 296
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 3 cut(s) 101, 235, 358
BspT107I GGYRCC 1 cut(s) 294
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 5 cut(s) 106, 227, 350, 376, 400
BssNI GRCGYC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 4 cut(s) 26, 169, 241, 294
BstACI GRCGYC 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 59, 72
BstF5I GGATG 1 cut(s) 362
BstFNI CGCG 1 cut(s) 433
BstKTI GATC 5 cut(s) 109, 230, 353, 379, 403
BstMAI GTCTC 2 cut(s) 239, 334
BstMBI GATC 5 cut(s) 106, 227, 350, 376, 400
BstMWI GCNNNNNNNGC 3 cut(s) 67, 80, 430
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 3 cut(s) 74, 78, 410
BstSCI CCNGG 2 cut(s) 83, 460
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 3 cut(s) 111, 395, 497
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 22
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 59, 72
Cfr10I RCCGGY 1 cut(s) 205
CseI GACGC 1 cut(s) 77
Csp6I GTAC 3 cut(s) 150, 270, 295
CviAII CATG 4 cut(s) 71, 75, 407, 420
CviJI RGCY 3 cut(s) 130, 205, 308
CviKI_1 RGCY 3 cut(s) 130, 205, 308
CviQI GTAC 3 cut(s) 150, 270, 295
DpnI GATC 5 cut(s) 108, 229, 352, 378, 402
DpnII GATC 5 cut(s) 106, 227, 350, 376, 400
EcoRII CCWGG 1 cut(s) 460
EcoT22I ATGCAT 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 4 cut(s) 74, 78, 410, 423
FaiI YATR 7 cut(s) 34, 55, 72, 76, 408, 421, 510
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 4 cut(s) 70, 74, 406, 419
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 309, 431
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 2 cut(s) 309, 431
FspBI CTAG 1 cut(s) 273
GluI GCNGC 2 cut(s) 309, 431
GsaI CCCAGC 1 cut(s) 99
HapII CCGG 2 cut(s) 85, 206
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 4 cut(s) 74, 78, 410, 423
HincII GTYRAC 2 cut(s) 6, 160
HindII GTYRAC 2 cut(s) 6, 160
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 1 cut(s) 448
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 2 cut(s) 85, 206
HphI GGTGA 2 cut(s) 130, 474
Hpy166II GTNNAC 2 cut(s) 6, 160
Hpy188I TCNGA 5 cut(s) 124, 232, 381, 400, 453
Hpy188III TCNNGA 3 cut(s) 212, 336, 473
Hpy8I GTNNAC 2 cut(s) 6, 160
HpyAV CCTTC 2 cut(s) 218, 513
HpyCH4III ACNGT 4 cut(s) 26, 169, 241, 294
HpyCH4V TGCA 4 cut(s) 12, 70, 74, 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 80, 430
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 4 cut(s) 74, 78, 410, 423
KpnI GGTACC 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 400
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 5 cut(s) 106, 227, 350, 376, 400
LpnPI CCDG 8 cut(s) 22, 71, 81, 98, 219, 447, 458, 474
Lsp1109I GCAGC 1 cut(s) 295
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 217
MalI GATC 5 cut(s) 108, 229, 352, 378, 402
MboI GATC 5 cut(s) 106, 227, 350, 376, 400
MboII GAAGA 8 cut(s) 35, 38, 41, 111, 290, 334, 400, 502
MhlI GDGCHC 1 cut(s) 85
MnlI CCTC 6 cut(s) 39, 367, 376, 387, 437, 510
Mph1103I ATGCAT 1 cut(s) 76
MroXI GAANNNNTTC 2 cut(s) 129, 188
MseI TTAA 2 cut(s) 159, 468
MspI CCGG 2 cut(s) 85, 206
MspR9I CCNGG 2 cut(s) 85, 462
MvaI CCWGG 1 cut(s) 462
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 3 cut(s) 67, 80, 430
NciI CCSGG 1 cut(s) 85
NdeII GATC 5 cut(s) 106, 227, 350, 376, 400
NlaIII CATG 4 cut(s) 74, 78, 410, 423
NlaIV GGNNCC 2 cut(s) 252, 296
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 3 cut(s) 74, 78, 410
PaeI GCATGC 1 cut(s) 74
PdmI GAANNNNTTC 2 cut(s) 129, 188
PfeI GAWTC 1 cut(s) 448
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 2 cut(s) 310, 432
Psp6I CCWGG 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 252, 296
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 3 cut(s) 151, 271, 296
RsaNI GTAC 3 cut(s) 150, 270, 295
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 159, 468
SatI GCNGC 2 cut(s) 309, 431
Sau3AI GATC 5 cut(s) 106, 227, 350, 376, 400
ScaI AGTACT 1 cut(s) 271
ScrFI CCNGG 2 cut(s) 85, 462
SduI GDGCHC 1 cut(s) 85
SetI ASST 5 cut(s) 11, 132, 310, 359, 398
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SphI GCATGC 1 cut(s) 74
SsiI CCGC 1 cut(s) 431
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 83, 460
TaaI ACNGT 4 cut(s) 26, 169, 241, 294
TaqI TCGA 3 cut(s) 5, 335, 386
TatI WGTACW 1 cut(s) 269
TauI GCSGC 1 cut(s) 433
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 2 cut(s) 159, 468
Tru9I TTAA 2 cut(s) 159, 468
TscAI CASTG 1 cut(s) 29
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 394
XceI RCATGY 3 cut(s) 74, 78, 410
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 129, 188
XspI CTAG 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.