Rw1G018570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016613
Physical Location & Seq
Forward (+)
40925096 .. 40925733
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018570.1

Sequence Viewer

Length: 459 bp
ATGTCGACCTGCACTACTCATCACTGTCCTCTATATCTTTTTCTTCTTCTTCTATGCCTGCTTTCTTTGCATGCATGTAGTGCCGGCGGTACTGATGTTAACATTACAGTTGTGCCGAAAGTGAAATCTTTCTCGTCATCAAAGCCGGTTCTTGAAGTTACAGAAGGATCAGAAATCACGGTGGAGACGGAACCCGATAGCGATGATAGTACTAGAGAAGAAAGTCCTAAACGGTACCACACAAAAGCTGCCCCCAATGTGAAGAATGTCTCATCGAGAAAAAGGAAAGGATCAACCTCATCATCCTCAAGTGCTGCAGATCAGAAGTCGAAGACGAGGTCTGATCAGAATGTTTCAGTTTCATGGCGAGTGCCGCGAAACAAACGAGGGATTCAGAAGCAACCAGGGTTTAATCTGGACTATTCACCCCCGAAGACACACCCTCCTTCTCATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.64

Weight (kDa)

9.39

Isoelectric Point (pI)

71.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016613)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60650
fragaria_vesca FvH4_7g11140
malus_domestica MD07G1116200.v1.1
prunus_persica Prupe.2G138500_v2.0.a1
rosa_laevigata RLG00000028599
rosa_multiflora Rmu_sc0003385.1_g000027 Rmu_ssc0000150.1_g000013
rosa_roxburghii Rroxscaffold_4G00306050
rosa_rugosa Rorug01G0201200
rosa_samantha Rh1AG218600 Rh1BG184000 Rh1CG203100 Rh1DG213800
rosa_wichuraiana Rw1G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 376
AciI CCGC 2 cut(s) 87, 374
AclWI GGATC 2 cut(s) 175, 298
AfaI GTAC 3 cut(s) 91, 211, 236
AgsI TTSAA 1 cut(s) 155
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 2 cut(s) 179, 274
AlwI GGATC 2 cut(s) 175, 298
ApeKI GCWGC 2 cut(s) 248, 314
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
Asp700I GAANNNNTTC 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 417
BaeI ACNNNNGTAYC 2 cut(s) 81, 114
BanI GGYRCC 1 cut(s) 234
BbsI GAAGAC 2 cut(s) 338, 440
BbvI GCAGC 2 cut(s) 235, 301
BciT130I CCWGG 1 cut(s) 405
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 179, 274
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 3 cut(s) 249, 315, 374
BlsI GCNGC 3 cut(s) 250, 316, 375
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 405
BmiI GGNNCC 2 cut(s) 192, 236
BmrFI CCNGG 1 cut(s) 405
BpiI GAAGAC 2 cut(s) 338, 440
BpuEI CTTGAG 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 404
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bse118I RCCGGY 2 cut(s) 83, 145
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 235, 301
Bsh1236I CGCG 1 cut(s) 376
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 84, 146
BsmAI GTCTC 2 cut(s) 179, 274
BsmBI CGTCTC 1 cut(s) 179
Bsp143I GATC 4 cut(s) 167, 290, 319, 343
BspACI CCGC 2 cut(s) 87, 374
BspFNI CGCG 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 192, 236
BspMAI CTGCAG 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 2 cut(s) 175, 298
BspT107I GGYRCC 1 cut(s) 234
BsrFI RCCGGY 2 cut(s) 83, 145
BssAI RCCGGY 2 cut(s) 83, 145
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 4 cut(s) 167, 290, 319, 343
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 4 cut(s) 26, 109, 181, 234
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 59, 72, 85
BstF5I GGATG 1 cut(s) 302
BstFNI CGCG 1 cut(s) 376
BstKTI GATC 4 cut(s) 170, 293, 322, 346
BstMAI GTCTC 2 cut(s) 179, 274
BstMBI GATC 4 cut(s) 167, 290, 319, 343
BstMWI GCNNNNNNNGC 3 cut(s) 67, 80, 373
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 2 cut(s) 74, 78
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 235, 301
BstV2I GAAGAC 2 cut(s) 338, 440
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 302
BtsIMutI CAGTG 1 cut(s) 22
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 3 cut(s) 59, 72, 85
Cfr10I RCCGGY 2 cut(s) 83, 145
Csp6I GTAC 3 cut(s) 90, 210, 235
CviAII CATG 3 cut(s) 71, 75, 363
CviJI RGCY 2 cut(s) 145, 248
CviKI_1 RGCY 2 cut(s) 145, 248
CviQI GTAC 3 cut(s) 90, 210, 235
DpnI GATC 4 cut(s) 169, 292, 321, 345
DpnII GATC 4 cut(s) 167, 290, 319, 343
EcoRII CCWGG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 3 cut(s) 74, 78, 366
FaiI YATR 6 cut(s) 34, 55, 72, 76, 364, 453
FatI CATG 3 cut(s) 70, 74, 362
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 249, 315, 374
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 3 cut(s) 249, 315, 374
FspBI CTAG 1 cut(s) 213
GluI GCNGC 3 cut(s) 249, 315, 374
HapII CCGG 2 cut(s) 84, 146
Hin1II CATG 3 cut(s) 74, 78, 366
HincII GTYRAC 2 cut(s) 6, 100
HindII GTYRAC 2 cut(s) 6, 100
HinfI GANTC 1 cut(s) 391
HpaI GTTAAC 1 cut(s) 100
HpaII CCGG 2 cut(s) 84, 146
HphI GGTGA 1 cut(s) 417
Hpy166II GTNNAC 2 cut(s) 6, 100
Hpy188I TCNGA 5 cut(s) 172, 324, 343, 348, 396
Hpy188III TCNNGA 3 cut(s) 152, 276, 416
Hpy8I GTNNAC 2 cut(s) 6, 100
HpyAV CCTTC 2 cut(s) 158, 456
HpyCH4III ACNGT 4 cut(s) 26, 109, 181, 234
HpyCH4V TGCA 4 cut(s) 12, 70, 74, 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 80, 373
Hsp92II CATG 3 cut(s) 74, 78, 366
KpnI GGTACC 1 cut(s) 238
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 100
Kzo9I GATC 4 cut(s) 167, 290, 319, 343
LpnPI CCDG 7 cut(s) 22, 71, 97, 159, 390, 401, 417
Lsp1109I GCAGC 2 cut(s) 235, 301
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 169, 292, 321, 345
MboI GATC 4 cut(s) 167, 290, 319, 343
MboII GAAGA 7 cut(s) 35, 38, 41, 230, 274, 343, 445
MnlI CCTC 6 cut(s) 39, 307, 316, 330, 380, 453
Mph1103I ATGCAT 1 cut(s) 76
MroNI GCCGGC 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 2 cut(s) 99, 411
MspI CCGG 2 cut(s) 84, 146
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 3 cut(s) 67, 80, 373
NaeI GCCGGC 1 cut(s) 85
NdeII GATC 4 cut(s) 167, 290, 319, 343
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 3 cut(s) 74, 78, 366
NlaIV GGNNCC 2 cut(s) 192, 236
NsiI ATGCAT 1 cut(s) 76
NspI RCATGY 2 cut(s) 74, 78
PaeI GCATGC 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 391
PflFI GACNNNGTC 1 cut(s) 337
PkrI GCNGC 3 cut(s) 250, 316, 375
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 192, 236
PstI CTGCAG 1 cut(s) 319
PsyI GACNNNGTC 1 cut(s) 337
RsaI GTAC 3 cut(s) 91, 211, 236
RsaNI GTAC 3 cut(s) 90, 210, 235
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 99, 411
SatI GCNGC 3 cut(s) 249, 315, 374
Sau3AI GATC 4 cut(s) 167, 290, 319, 343
ScaI AGTACT 1 cut(s) 211
ScrFI CCNGG 1 cut(s) 405
SetI ASST 4 cut(s) 11, 250, 299, 341
SfcI CTRYAG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
SphI GCATGC 1 cut(s) 74
SsiI CCGC 2 cut(s) 87, 374
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 4 cut(s) 26, 109, 181, 234
TaqI TCGA 3 cut(s) 5, 275, 329
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 376
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 99, 411
Tru9I TTAA 2 cut(s) 99, 411
TscAI CASTG 1 cut(s) 29
TseI GCWGC 2 cut(s) 248, 314
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 29
Tth111I GACNNNGTC 1 cut(s) 337
XceI RCATGY 2 cut(s) 74, 78
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 211
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.