MD07G1116200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016613
Physical Location & Seq
Forward (+)
14095832 .. 14097039
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1116200.v1.1.491

Sequence Viewer

Length: 495 bp
ATGTCAACCAGTACTGCTCATTATCTTCTTCTTTATCTTCTATGCCTTTCTTTCCATGCATGTGATGCCCGGCGTCTTGGTGCGGTTCATAAGGAGCCTGACAACAAATTTCACCTCATCAACAAGAGTACTAAAGCACAGGTTTCGGATCATAAAATTCCAGCTATGTCAATGATGAAGTCTTTCTCATCAAAGCCATCACTTGATCAAGGGGAAAAAGGAGAAAGCACAGTACTACAAAGTGATAGTATTAATAATAAAGAGCCGAAGCACACAAAGACCACTGATGATCTGAAGACCATTCCGAAAACAATCATAAAAGGTTCAACCTCAGCCCCAGGTGCTGATCATCCAATAAGTACTTCAAAGCATGATAAGTCGTCTTTCGTTTCGGTTTCATGGCGTGTGCCTCGCAAGAAGCGTGGAGTTCAGAAGCAACCTGGGTTTAATCTGGACTACTCACCCCCAAAGACACACCCTCCCTCTCATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.16

Weight (kDa)

9.75

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016613)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60650
fragaria_vesca FvH4_7g11140
malus_domestica MD07G1116200.v1.1
prunus_persica Prupe.2G138500_v2.0.a1
rosa_laevigata RLG00000028599
rosa_multiflora Rmu_sc0003385.1_g000027 Rmu_ssc0000150.1_g000013
rosa_roxburghii Rroxscaffold_4G00306050
rosa_rugosa Rorug01G0201200
rosa_samantha Rh1AG218600 Rh1BG184000 Rh1CG203100 Rh1DG213800
rosa_wichuraiana Rw1G018570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 156
AcsI RAATTY 2 cut(s) 107, 156
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 4 cut(s) 13, 130, 234, 361
AgsI TTSAA 2 cut(s) 327, 366
AjnI CCWGG 2 cut(s) 337, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 346, 378
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
AlwI GGATC 1 cut(s) 156
AlwNI CAGNNNCTG 1 cut(s) 344
ApoI RAATTY 2 cut(s) 107, 156
AseI ATTAAT 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 2 cut(s) 104, 453
BbsI GAAGAC 1 cut(s) 302
BbvCI CCTCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 205
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 2 cut(s) 339, 441
BclI TGATCA 2 cut(s) 205, 346
BcnI CCSGG 1 cut(s) 70
BmcAI AGTACT 4 cut(s) 13, 130, 234, 361
Bme1390I CCNGG 3 cut(s) 70, 339, 441
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 3 cut(s) 70, 339, 441
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 337, 440
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 2 cut(s) 339, 441
BseDI CCNNGG 2 cut(s) 337, 440
BseGI GGATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 70
Bsp143I GATC 4 cut(s) 148, 205, 289, 346
BspACI CCGC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 337, 440
BssMI GATC 4 cut(s) 148, 205, 289, 346
BssNI GRCGYC 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 339, 441
Bst4CI ACNGT 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 331
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 4 cut(s) 151, 208, 292, 349
BstMBI GATC 4 cut(s) 148, 205, 289, 346
BstMWI GCNNNNNNNGC 2 cut(s) 65, 341
BstNI CCWGG 2 cut(s) 339, 441
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 3 cut(s) 68, 337, 439
BstV2I GAAGAC 1 cut(s) 302
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 282
CaiI CAGNNNCTG 1 cut(s) 344
CseI GACGC 1 cut(s) 62
Csp6I GTAC 4 cut(s) 12, 129, 233, 360
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 4 cut(s) 56, 60, 371, 399
CviJI RGCY 5 cut(s) 97, 164, 196, 265, 335
CviKI_1 RGCY 5 cut(s) 97, 164, 196, 265, 335
CviQI GTAC 4 cut(s) 12, 129, 233, 360
DdeI CTNAG 1 cut(s) 331
DpnI GATC 4 cut(s) 150, 207, 291, 348
DpnII GATC 4 cut(s) 148, 205, 289, 346
Eco57I CTGAAG 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 337, 439
EcoT22I ATGCAT 1 cut(s) 61
FaeI CATG 4 cut(s) 59, 63, 374, 402
FatI CATG 4 cut(s) 55, 59, 370, 398
FbaI TGATCA 2 cut(s) 205, 346
FokI GGATG 1 cut(s) 336
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 4 cut(s) 59, 63, 374, 402
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaII CCGG 1 cut(s) 70
HphI GGTGA 2 cut(s) 104, 453
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 148, 294, 306, 432
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 341
HpyF3I CTNAG 1 cut(s) 331
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 4 cut(s) 59, 63, 374, 402
Ksp22I TGATCA 2 cut(s) 205, 346
Kzo9I GATC 4 cut(s) 148, 205, 289, 346
LmnI GCTCC 1 cut(s) 94
LweI GCATC 1 cut(s) 55
MalI GATC 4 cut(s) 150, 207, 291, 348
MboI GATC 4 cut(s) 148, 205, 289, 346
MboII GAAGA 4 cut(s) 17, 20, 29, 307
MluCI AATT 2 cut(s) 107, 156
MnlI CCTC 5 cut(s) 125, 340, 420, 489, 493
Mph1103I ATGCAT 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 2 cut(s) 252, 447
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 3 cut(s) 70, 339, 441
MvaI CCWGG 2 cut(s) 339, 441
MwoI GCNNNNNNNGC 2 cut(s) 65, 341
NciI CCSGG 1 cut(s) 70
NdeII GATC 4 cut(s) 148, 205, 289, 346
NlaIII CATG 4 cut(s) 59, 63, 374, 402
NlaIV GGNNCC 1 cut(s) 96
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 337, 439
PspGI CCWGG 2 cut(s) 337, 439
PspN4I GGNNCC 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 344
RsaI GTAC 4 cut(s) 13, 130, 234, 361
RsaNI GTAC 4 cut(s) 12, 129, 233, 360
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 2 cut(s) 252, 447
Sau3AI GATC 4 cut(s) 148, 205, 289, 346
ScaI AGTACT 4 cut(s) 13, 130, 234, 361
ScrFI CCNGG 3 cut(s) 70, 339, 441
SetI ASST 7 cut(s) 117, 144, 166, 325, 332, 343, 442
SfaNI GCATC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 2 cut(s) 107, 156
SsiI CCGC 1 cut(s) 83
StyD4I CCNGG 3 cut(s) 68, 337, 439
TaaI ACNGT 1 cut(s) 232
TasI AATT 2 cut(s) 107, 156
TatI WGTACW 4 cut(s) 11, 128, 232, 359
Tru1I TTAA 2 cut(s) 252, 447
Tru9I TTAA 2 cut(s) 252, 447
TscAI CASTG 1 cut(s) 289
TspDTI ATGAA 3 cut(s) 77, 191, 387
TspRI CASTG 1 cut(s) 289
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 2 cut(s) 107, 156
XceI RCATGY 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 182
ZrmI AGTACT 4 cut(s) 13, 130, 234, 361
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.