FvH4_7g13550

Domain of unknown function (DUF313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016389
Physical Location & Seq
Reverse (-)
12141109 .. 12142156
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13550.t1

Sequence Viewer

Length: 1047 bp
ATGGCTACTCTCGCGATCAGTTCTTCAAGCCTTTCATATCTCCAAGAACAAGAAGAAGAAAAAAAGATGGGTTCTTGTTCTTCGAGTAAAGAAATAGTCTGTTTTCATGAGGACTGGTCTGCACTTCATATGTTGGTCGAGGTTTCTTGCCAACTTAGCGAACAAGAGAAGAAGGGTATGTGTCTCTCATCCTTGCTGCGTCATCAACATGTCTGCCCTAAGAAACCAAGGTCACCTCCTCGCCCTATCCGTAATGTTATTGCTTCTGGTTCTTCTTATCAAAACAACAGAAGTGATGAGAGTAAGGGTTTGAAAAGAAAAAGAAAGCAAAGTGTTGAATGTCTTGATGATCATGTTGAAGACTCGGCGAAAAAGAAGAAGAAGAGAAGATATATGACGAGGATGGATCACAAGGGTGTGTATCAACCTCCTCCGGATTTGCCTGAAGAATACAAGAAAATGGTGAATGGGGCAAAGGCAGAGTTGGTGATACAGAAGCAATTGTTTACTAGCGATGTGAAGCGCAACCTGAACCGGTTGTCATTGCCTCCAAAGCAGATTCTGTGCGAGTTTCTGAGACGGGATGAGATTGAAGGCTTAAAGGAGAATGATACTTTCATGAAGGTTCCATTTATAGACCCGGAGTTGGAGATGGAGGAGATTTCGGTGAGTTTTTGGAAGCTGTCGAGCTCGGATGAGAAGTCCCTTGTGTTGAATTCTAACTGGAATTATATTGTTGAGAAGAATAAGCTGGTTAAGGGTGATCTGATCCAAGTATGGTCGTTTCGGGATAGCAATGATCGGCTTCAGTTGGCGCTTGTTGTGCTGAAGAGAGCCGAGGAGAGCGAAAATGGTGTTGTGGAGAGAGCCGAGGAGTGCGCAAATGGTGAGGAAGGGAGAAGCACTGCGAGAAGTAGCAGTGTGAGCAGTGTCAGTGAGGATAGTGCAGTTGCAGGCCACAAAGGAAGTACATGTCTGAAAATCAGATTTAAATGTAATGCTAGCAAGAGTGAGAGTACTAGTACATCTGACTTATTGAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

349

Amino Acids

39.46

Weight (kDa)

8.41

Isoelectric Point (pI)

69.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 151 - 248 3.4e-11 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13550
prunus_persica Prupe.2G161700_v2.0.a1 Prupe.2G162000_v2.0.a1
rosa_laevigata RLG00000028289
rosa_multiflora Rmu_sc0001207.1_g000082 Rmu_sc0011028.1_g000001
rosa_roxburghii Rroxscaffold_4G00302050
rosa_rugosa Rorug01G0233600
rosa_samantha Rh1AG247500 Rh1BG217300 Rh1CG231000 Rh1DG243400
rosa_wichuraiana Rw0G018090 Rw1G021410 Rw1G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 880
AccII CGCG 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 433
AclWI GGATC 2 cut(s) 414, 763
AcsI RAATTY 1 cut(s) 715
AcuI CTGAAG 3 cut(s) 465, 791, 848
AfaI GTAC 3 cut(s) 970, 1018, 1024
AfiI CCNNNNNNNGG 1 cut(s) 646
AflIII ACRYGT 2 cut(s) 208, 971
AgeI ACCGGT 1 cut(s) 534
AgsI TTSAA 6 cut(s) 27, 313, 338, 359, 593, 715
AhlI ACTAGT 1 cut(s) 1019
AleI CACNNNNGTG 1 cut(s) 414
AluBI AGCT 3 cut(s) 682, 690, 751
AluI AGCT 3 cut(s) 682, 690, 751
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 2 cut(s) 188, 571
AlwI GGATC 2 cut(s) 414, 763
AlwNI CAGNNNCTG 1 cut(s) 562
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 1 cut(s) 955
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 715
AsiGI ACCGGT 1 cut(s) 534
AspLEI GCGC 3 cut(s) 525, 817, 881
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 6 cut(s) 225, 475, 499, 679, 773, 899
AsuNHI GCTAGC 1 cut(s) 1001
BanII GRGCYC 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 692
BbvI GCAGC 1 cut(s) 183
BccI CCATC 3 cut(s) 61, 397, 646
BclI TGATCA 1 cut(s) 349
BcnI CCSGG 1 cut(s) 641
BcoDI GTCTC 2 cut(s) 188, 571
BcuI ACTAGT 1 cut(s) 1019
BfaI CTAG 3 cut(s) 510, 1002, 1020
BfoI RGCGCY 1 cut(s) 818
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
BmcAI AGTACT 1 cut(s) 1018
Bme1390I CCNGG 1 cut(s) 641
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 1 cut(s) 641
BmtI GCTAGC 1 cut(s) 1005
BpiI GAAGAC 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 641
BsaJI CCNNGG 3 cut(s) 227, 837, 870
BsaWI WCCGGW 2 cut(s) 433, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 646
Bse118I RCCGGY 1 cut(s) 534
Bse1I ACTGG 2 cut(s) 119, 728
Bse3DI GCAATG 2 cut(s) 542, 802
BseAI TCCGGA 1 cut(s) 433
BseDI CCNNGG 3 cut(s) 227, 837, 870
BseGI GGATG 4 cut(s) 188, 408, 589, 700
BseLI CCNNNNNNNGG 1 cut(s) 646
BseMI GCAATG 2 cut(s) 542, 802
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 2 cut(s) 119, 728
BseRI GAGGAG 5 cut(s) 228, 420, 671, 854, 887
BseXI GCAGC 1 cut(s) 183
BsgI GTGCAG 2 cut(s) 105, 966
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 1 cut(s) 957
BshTI ACCGGT 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 692
BsiSI CCGG 3 cut(s) 434, 535, 641
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 1 cut(s) 646
BsmAI GTCTC 2 cut(s) 188, 571
BsmBI CGTCTC 1 cut(s) 571
BsmFI GGGAC 1 cut(s) 688
BsnI GGCC 1 cut(s) 957
Bsp1286I GDGCHC 1 cut(s) 692
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 6 cut(s) 15, 349, 406, 763, 768, 799
Bsp68I TCGCGA 1 cut(s) 14
BspANI GGCC 1 cut(s) 957
BspCNI CTCAG 1 cut(s) 567
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 2 cut(s) 106, 618
BspLI GGNNCC 1 cut(s) 627
BspOI GCTAGC 1 cut(s) 1005
BspPI GGATC 2 cut(s) 414, 763
BsrDI GCAATG 2 cut(s) 542, 802
BsrFI RCCGGY 1 cut(s) 534
BsrI ACTGG 2 cut(s) 119, 728
BssAI RCCGGY 1 cut(s) 534
BssECI CCNNGG 3 cut(s) 227, 837, 870
BssMI GATC 6 cut(s) 15, 349, 406, 763, 768, 799
BssT1I CCWWGG 1 cut(s) 227
Bst6I CTCTTC 2 cut(s) 377, 824
BstC8I GCNNGC 2 cut(s) 955, 1003
BstDEI CTNAG 3 cut(s) 155, 219, 575
BstEII GGTNACC 1 cut(s) 231
BstF5I GGATG 4 cut(s) 188, 408, 589, 700
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 818
BstHHI GCGC 3 cut(s) 525, 817, 881
BstKTI GATC 6 cut(s) 18, 352, 409, 766, 771, 802
BstMAI GTCTC 2 cut(s) 188, 571
BstMBI GATC 6 cut(s) 15, 349, 406, 763, 768, 799
BstMWI GCNNNNNNNGC 5 cut(s) 11, 156, 553, 823, 924
BstNSI RCATGY 2 cut(s) 212, 975
BstPI GGTNACC 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 639
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 366
BsuRI GGCC 1 cut(s) 957
BtgZI GCGATG 1 cut(s) 528
BtsCI GGATG 4 cut(s) 188, 408, 589, 700
BtsI GCAGTG 3 cut(s) 903, 925, 934
BtsIMutI CAGTG 4 cut(s) 903, 925, 934, 940
BtuMI TCGCGA 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 955, 1003
CaiI CAGNNNCTG 1 cut(s) 562
CciI TCATGA 2 cut(s) 106, 618
CfoI GCGC 3 cut(s) 525, 817, 881
Cfr10I RCCGGY 1 cut(s) 534
CseI GACGC 1 cut(s) 188
Csp6I GTAC 3 cut(s) 969, 1017, 1023
CspAI ACCGGT 1 cut(s) 534
CviAII CATG 5 cut(s) 107, 209, 353, 619, 972
CviQI GTAC 3 cut(s) 969, 1017, 1023
DdeI CTNAG 3 cut(s) 155, 219, 575
DpnI GATC 6 cut(s) 17, 351, 408, 765, 770, 801
DpnII GATC 6 cut(s) 15, 349, 406, 763, 768, 799
DraI TTTAAA 1 cut(s) 991
Eam1104I CTCTTC 2 cut(s) 377, 824
EarI CTCTTC 2 cut(s) 377, 824
Ecl136II GAGCTC 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 692
Eco53kI GAGCTC 1 cut(s) 690
Eco57I CTGAAG 3 cut(s) 465, 791, 848
Eco91I GGTNACC 1 cut(s) 231
EcoICRI GAGCTC 1 cut(s) 690
EcoO65I GGTNACC 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 715
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 227
Esp3I CGTCTC 1 cut(s) 571
FaeI CATG 5 cut(s) 110, 212, 356, 622, 975
FaqI GGGAC 1 cut(s) 688
FatI CATG 5 cut(s) 106, 208, 352, 618, 971
FauNDI CATATG 1 cut(s) 129
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 4 cut(s) 175, 415, 596, 707
FriOI GRGCYC 1 cut(s) 692
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 3 cut(s) 510, 1002, 1020
FspI TGCGCA 1 cut(s) 880
GlaI GCGC 3 cut(s) 524, 816, 880
GluI GCNGC 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 818
HaeIII GGCC 1 cut(s) 957
HapII CCGG 3 cut(s) 434, 535, 641
HgaI GACGC 1 cut(s) 188
HhaI GCGC 3 cut(s) 525, 817, 881
Hin1II CATG 5 cut(s) 110, 212, 356, 622, 975
Hin6I GCGC 3 cut(s) 523, 815, 879
HinP1I GCGC 3 cut(s) 523, 815, 879
HinfI GANTC 3 cut(s) 362, 559, 1039
HpaII CCGG 3 cut(s) 434, 535, 641
HphI GGTGA 6 cut(s) 225, 475, 499, 679, 773, 899
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 6 cut(s) 576, 694, 768, 978, 986, 1030
Hpy188III TCNNGA 6 cut(s) 13, 107, 344, 434, 619, 788
Hpy8I GTNNAC 1 cut(s) 507
HpyAV CCTTC 4 cut(s) 166, 587, 616, 887
HpyCH4V TGCA 3 cut(s) 122, 947, 953
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 156, 553, 823, 924
HpyF3I CTNAG 3 cut(s) 155, 219, 575
Hsp92II CATG 5 cut(s) 110, 212, 356, 622, 975
HspAI GCGC 3 cut(s) 523, 815, 879
Kpn2I TCCGGA 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 6 cut(s) 15, 349, 406, 763, 768, 799
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 3 cut(s) 510, 1002, 1020
MaeIII GTNAC 1 cut(s) 231
MalI GATC 6 cut(s) 17, 351, 408, 765, 770, 801
MboI GATC 6 cut(s) 15, 349, 406, 763, 768, 799
MfeI CAATTG 1 cut(s) 500
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 3 cut(s) 500, 715, 727
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 627
MroI TCCGGA 1 cut(s) 433
MseI TTAA 3 cut(s) 599, 756, 990
MslI CAYNNNNRTG 2 cut(s) 207, 414
MspI CCGG 3 cut(s) 434, 535, 641
MspR9I CCNGG 1 cut(s) 641
MunI CAATTG 1 cut(s) 500
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 5 cut(s) 11, 156, 553, 823, 924
NciI CCSGG 1 cut(s) 641
NdeI CATATG 1 cut(s) 129
NdeII GATC 6 cut(s) 15, 349, 406, 763, 768, 799
NheI GCTAGC 1 cut(s) 1001
NlaIII CATG 5 cut(s) 110, 212, 356, 622, 975
NlaIV GGNNCC 1 cut(s) 627
NmeAIII GCCGAG 3 cut(s) 344, 862, 895
NmuCI GTSAC 1 cut(s) 231
NruI TCGCGA 1 cut(s) 14
NsbI TGCGCA 1 cut(s) 880
NspI RCATGY 2 cut(s) 212, 975
OliI CACNNNNGTG 1 cut(s) 414
PagI TCATGA 2 cut(s) 106, 618
PciI ACATGT 2 cut(s) 208, 971
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PfeI GAWTC 1 cut(s) 559
PinAI ACCGGT 1 cut(s) 534
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PscI ACATGT 2 cut(s) 208, 971
Psp124BI GAGCTC 1 cut(s) 692
PspEI GGTNACC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 627
PstNI CAGNNNCTG 1 cut(s) 562
RruI TCGCGA 1 cut(s) 14
RsaI GTAC 3 cut(s) 970, 1018, 1024
RsaNI GTAC 3 cut(s) 969, 1017, 1023
RseI CAYNNNNRTG 2 cut(s) 207, 414
SacI GAGCTC 1 cut(s) 692
SaqAI TTAA 3 cut(s) 599, 756, 990
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 6 cut(s) 15, 349, 406, 763, 768, 799
ScaI AGTACT 1 cut(s) 1018
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 1 cut(s) 692
SetI ASST 9 cut(s) 144, 233, 238, 430, 531, 627, 684, 692, 753
SmiI ATTTAAAT 1 cut(s) 991
SmiMI CAYNNNNRTG 2 cut(s) 207, 414
SpeI ACTAGT 1 cut(s) 1019
Sse9I AATT 3 cut(s) 500, 715, 727
SspMI CTAG 3 cut(s) 510, 1002, 1020
SstI GAGCTC 1 cut(s) 692
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 1 cut(s) 227
SwaI ATTTAAAT 1 cut(s) 991
TaqI TCGA 3 cut(s) 83, 138, 686
TasI AATT 3 cut(s) 500, 715, 727
TatI WGTACW 3 cut(s) 968, 1016, 1022
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 3 cut(s) 599, 756, 990
Tru9I TTAA 3 cut(s) 599, 756, 990
TscAI CASTG 4 cut(s) 910, 925, 934, 940
TseFI GTSAC 1 cut(s) 231
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 5 cut(s) 24, 95, 116, 607, 635
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 4 cut(s) 910, 925, 934, 940
XapI RAATTY 1 cut(s) 715
XceI RCATGY 2 cut(s) 212, 975
XspI CTAG 3 cut(s) 510, 1002, 1020
ZrmI AGTACT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.