Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016389

Physical Location & Seq

Genomic Coordinates Reverse (-)

21292696 .. 21293943

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G162000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTTCTTCTTCACTGGGTTCTTTCAATCTCTCAAGTAGGAGCAAAAGAGAAGGAGACGAAGCAGAAGACAAAGGGAAGATGGGGTATTTGACAATGGAAGATTTTAAAGGCATGAATTTTGATTCTTTGTGTCCTTATGATCAACTGACATTGGTTGCCACTGTTCTTGTTGAAAAAACTGAGCAAGAGAAGAAACAATTGAAGAATGAGGAGCACCAGATACAGAGCAGACCCTCCTCATCACCACAAGGACACAGAAGGAGTAATAATTATGGGTTGAAAAGAAAATCCAATGATGATCATGATGATAGAGATAAAGATTGGGCTGTTCCCAAGAAGAAGAAGGAGAAGAAGGTGTACATCAAGAATAAGAAGGGTCCTACTCTTGACCATCGTCCTGATTTGCCTGAAAATTTCAAGAAAATGATCATAGGCCAGATGAATGGCACAGAGCTGAGATGTCTCATACAAAAGGAATTGTTCAGAAGTGATGTAAATGGCAGTCTAAACAGGTTTTCATTGCCTCCAAACCAAGTCTTATGCAACGATTTCCTCACACCTAGTGAGATTGAAGCTCTTAAAGAGAGGAAAGGGAAGAAAAATCACGATCAGGGTTCCTTAAAAAGTCCATCGCCTTCCCTCAAAGTTCCATTAATAGATCCGAGTCTTAAGCTTGAAGATAAAGAAGGGATAAACTTGACTATGTGGACGCTGTCAAACTCAGAAACAAAAACCTATGTGTTGAGAACTACTTGGGGTAAGGTTGTTAGGGAAAACAAGCTGGTTCCTGGTGATGTACTCCAAGTTTGGTCTTTTCGGGCTAACAACAATCAGCTTCACTTGGCTATTGTTGTGGCAAAAAGAGCTGGGAAAATTGGTGCCAACCAGAGTGAAAGGAGTTCTAGTAAGAGGGGCAATATTGTTGATATTGGTGATGAATGTGGTGGCCAAGGAAGTAGAGAAGTGGAAGGTAGCAGTGAAGTTATGTACAGGAGCGCACATAAGATTCATTTGTCAGATAAACAGGAAAATGAAGACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

349

Amino Acids

39.37

Weight (kDa)

9.16

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016389)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13550
prunus_persica	Prupe.2G161700_v2.0.a1 Prupe.2G162000_v2.0.a1
rosa_laevigata	RLG00000028289
rosa_multiflora	Rmu_sc0001207.1_g000082 Rmu_sc0011028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00302050
rosa_rugosa	Rorug01G0233600
rosa_samantha	Rh1AG247500 Rh1BG217300 Rh1CG231000 Rh1DG243400
rosa_wichuraiana	Rw0G018090 Rw1G021410 Rw1G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	881
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	949
AcsI	RAATTY	2 cut(s)	118, 415
AdeI	CACNNNGTG	1 cut(s)	566
AfaI	GTAC	3 cut(s)	362, 801, 992
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	7 cut(s)	28, 176, 205, 283, 421, 575, 680
AjnI	CCWGG	1 cut(s)	790
AluBI	AGCT	6 cut(s)	457, 578, 676, 784, 838, 869
AluI	AGCT	6 cut(s)	457, 578, 676, 784, 838, 869
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	2 cut(s)	51, 470
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	2 cut(s)	436, 949
ApoI	RAATTY	2 cut(s)	118, 415
AseI	ATTAAT	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	1001
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	3 cut(s)	237, 806, 947
AvaII	GGWCC	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	951
BanI	GGYRCC	1 cut(s)	881
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	219
BccI	CCATC	3 cut(s)	76, 402, 640
BciT130I	CCWGG	1 cut(s)	792
BclI	TGATCA	3 cut(s)	142, 301, 429
BcoDI	GTCTC	2 cut(s)	51, 470
BfaI	CTAG	2 cut(s)	564, 906
BfrI	CTTAAG	1 cut(s)	671
Bme1390I	CCNGG	1 cut(s)	792
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	4 cut(s)	381, 619, 789, 883
BmrFI	CCNGG	1 cut(s)	792
BmrI	ACTGGG	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	26
BoxI	GACNNNNGTC	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	952
BsaXI	ACNNNNNCTCC	2 cut(s)	892, 922
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	952
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	3 cut(s)	174, 449, 738
BseNI	ACTGG	1 cut(s)	21
BseRI	GAGGAG	2 cut(s)	227, 229
BseYI	CCCAGC	1 cut(s)	869
BshFI	GGCC	2 cut(s)	438, 951
BshNI	GGYRCC	1 cut(s)	881
BsiHKAI	GWGCWC	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	51, 470
BsmBI	CGTCTC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	438, 951
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	2 cut(s)	360, 990
Bsp143I	GATC	5 cut(s)	142, 301, 429, 610, 661
BspANI	GGCC	2 cut(s)	438, 951
BspCNI	CTCAG	3 cut(s)	175, 450, 737
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	4 cut(s)	381, 619, 789, 883
BspPI	GGATC	1 cut(s)	656
BspT107I	GGYRCC	1 cut(s)	881
BspTI	CTTAAG	1 cut(s)	671
BsrDI	GCAATG	1 cut(s)	521
BsrGI	TGTACA	2 cut(s)	360, 990
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	952
BssMI	GATC	5 cut(s)	142, 301, 429, 610, 661
BssT1I	CCWWGG	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	1 cut(s)	166
BstAFI	CTTAAG	1 cut(s)	671
BstAUI	TGTACA	2 cut(s)	360, 990
BstDEI	CTNAG	3 cut(s)	183, 458, 724
BstHHI	GCGC	1 cut(s)	1001
BstKTI	GATC	5 cut(s)	145, 304, 432, 613, 664
BstMAI	GTCTC	2 cut(s)	51, 470
BstMBI	GATC	5 cut(s)	142, 301, 429, 610, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstNI	CCWGG	1 cut(s)	792
BstPAI	GACNNNNGTC	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	790
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	438, 951
BtgZI	GCGATG	1 cut(s)	618
BtsI	GCAGTG	1 cut(s)	985
BtsIMutI	CAGTG	3 cut(s)	14, 162, 985
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	1001
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	721
Csp6I	GTAC	3 cut(s)	361, 800, 991
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	2 cut(s)	115, 305
CviQI	GTAC	3 cut(s)	361, 800, 991
DdeI	CTNAG	3 cut(s)	183, 458, 724
DpnI	GATC	5 cut(s)	144, 303, 431, 612, 663
DpnII	GATC	5 cut(s)	142, 301, 429, 610, 661
DraI	TTTAAA	1 cut(s)	109
DraIII	CACNNNGTG	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	949
Eco130I	CCWWGG	1 cut(s)	952
Eco47I	GGWCC	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	952
ErhI	CCWWGG	1 cut(s)	952
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	118, 308
FatI	CATG	2 cut(s)	114, 304
FbaI	TGATCA	3 cut(s)	142, 301, 429
FspBI	CTAG	2 cut(s)	564, 906
GlaI	GCGC	1 cut(s)	1000
GsaI	CCCAGC	1 cut(s)	873
HaeIII	GGCC	2 cut(s)	438, 951
HgaI	GACGC	1 cut(s)	721
HhaI	GCGC	1 cut(s)	1001
Hin1II	CATG	2 cut(s)	118, 308
Hin6I	GCGC	1 cut(s)	999
HinP1I	GCGC	1 cut(s)	999
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	3 cut(s)	125, 667, 1009
HphI	GGTGA	3 cut(s)	237, 806, 947
Hpy166II	GTNNAC	2 cut(s)	361, 711
Hpy188I	TCNGA	4 cut(s)	488, 666, 727, 1021
Hpy188III	TCNNGA	6 cut(s)	305, 367, 389, 401, 421, 608
Hpy8I	GTNNAC	2 cut(s)	361, 711
HpyAV	CCTTC	8 cut(s)	47, 255, 340, 349, 370, 648, 683, 965
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	3 cut(s)	183, 458, 724
Hsp92II	CATG	2 cut(s)	118, 308
HspAI	GCGC	1 cut(s)	999
Ksp22I	TGATCA	3 cut(s)	142, 301, 429
Kzo9I	GATC	5 cut(s)	142, 301, 429, 610, 661
LmnI	GCTCC	3 cut(s)	42, 214, 996
MaeI	CTAG	2 cut(s)	564, 906
MalI	GATC	5 cut(s)	144, 303, 431, 612, 663
MboI	GATC	5 cut(s)	142, 301, 429, 610, 661
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	951
MluCI	AATT	6 cut(s)	118, 200, 271, 415, 479, 876
MluNI	TGGCCA	1 cut(s)	951
MlyI	GAGTC	1 cut(s)	676
MnlI	CCTC	8 cut(s)	205, 247, 250, 537, 566, 582, 653, 906
Mox20I	TGGCCA	1 cut(s)	951
MscI	TGGCCA	1 cut(s)	951
MseI	TTAA	6 cut(s)	108, 582, 623, 656, 672, 1045
Msp20I	TGGCCA	1 cut(s)	951
MspCI	CTTAAG	1 cut(s)	671
MspR9I	CCNGG	1 cut(s)	792
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	1 cut(s)	866
NdeII	GATC	5 cut(s)	142, 301, 429, 610, 661
NlaIII	CATG	2 cut(s)	118, 308
NlaIV	GGNNCC	4 cut(s)	381, 619, 789, 883
PagI	TCATGA	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	125, 1009
PflFI	GACNNNGTC	1 cut(s)	715
PleI	GAGTC	1 cut(s)	675
PpsI	GAGTC	1 cut(s)	675
PpuMI	RGGWCCY	1 cut(s)	380
PshAI	GACNNNNGTC	1 cut(s)	396
PshBI	ATTAAT	1 cut(s)	656
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	790
PspFI	CCCAGC	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	4 cut(s)	381, 619, 789, 883
PspPI	GGNCC	1 cut(s)	380
PspPPI	RGGWCCY	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	661
PsyI	GACNNNGTC	1 cut(s)	715
RsaI	GTAC	3 cut(s)	362, 801, 992
RsaNI	GTAC	3 cut(s)	361, 800, 991
SaqAI	TTAA	6 cut(s)	108, 582, 623, 656, 672, 1045
Sau3AI	GATC	5 cut(s)	142, 301, 429, 610, 661
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	1 cut(s)	219
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	34, 671
SmoI	CTYRAG	2 cut(s)	34, 671
Sse9I	AATT	6 cut(s)	118, 200, 271, 415, 479, 876
SspI	AATATT	1 cut(s)	922
SspMI	CTAG	2 cut(s)	564, 906
StyD4I	CCNGG	1 cut(s)	790
StyI	CCWWGG	1 cut(s)	952
TaaI	ACNGT	1 cut(s)	166
TasI	AATT	6 cut(s)	118, 200, 271, 415, 479, 876
TatI	WGTACW	3 cut(s)	360, 799, 990
TfiI	GAWTC	2 cut(s)	125, 1009
Tru1I	TTAA	6 cut(s)	108, 582, 623, 656, 672, 1045
Tru9I	TTAA	6 cut(s)	108, 582, 623, 656, 672, 1045
TscAI	CASTG	3 cut(s)	21, 169, 985
TspDTI	ATGAA	5 cut(s)	131, 458, 510, 954, 1001
TspRI	CASTG	3 cut(s)	21, 169, 985
Tth111I	GACNNNGTC	1 cut(s)	715
Vha464I	CTTAAG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	380
VspI	ATTAAT	1 cut(s)	656
XapI	RAATTY	2 cut(s)	118, 415
XspI	CTAG	2 cut(s)	564, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.