Rh1DG243400

Domain of unknown function (DUF313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016389
Physical Location & Seq
Reverse (-)
45894519 .. 45896133
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG243400.1

Sequence Viewer

Length: 1035 bp
ATGGGTACACTGGTCAGTTCTTCAAATCTCTCATATCTCCGAGAACAAGAAGAAAAGATGGGATCTTTGAGTACGGAAATCCTCCAGGACAAGAAATTATGCGAGGACTGGTCTGCGCTTCATATGTTGGTAGAGGTTTCCTGCCATGTTAGAGAAGAAGAAAAGAAGGGTATGTGTGTGTTATCTTTGGTGAGTCAACAGGTATGCCCTAAGAAACAAAGGTCGCCACCCCGTGGTGAAAGTTCAAAAATGACGAGCCCTATCCCTGATATTGCTTCTGGTTCTTCCGATCAAGAAAATAGAAGAATTGATAGCAAGGGTTTGAAAAGAAAAAGGAAGCCATGTGTTGATTGTCATAATGATAAAGACTTGGAGGCCGCGGCGAAGAAGAAGAAGAAGAGAACATATATGATGAAGGTGGACATGTGTGTTTATCAACCACCCCCCGATTTGCCTGAAAAGTACAAGCAAATGGTGAATGGGGCAAATGCGGCATTGGTGATACAAAAGCAGTTGTTTACGAGTGATGTGAACCCTGACCTGAATCGGCTGACATTGCCTCCAAAACAAATTTTGTGCAAGGAGTTGCTGAGACCTGATGAGATAGAGATCCTTAAGCCGAAGGATGCTTTGCTTAAAGTTCCATTTATAGACCCAGAGCTCAGAAAGGAAGAGATTTCACTGAGTTTATGGAAGCTGTCGAGCTCAAATGAAAGGTCCCTTGTGTTCAAATCTAAATGGAATCATATTGTTAAGAAGAACGATCTGGGTGAAGGTGATCTGATCCAAATCTGGTCATTTCGGGATAGCAACGATCAACTTCAGTTGGCACTTGTTGTGGTGAAGAGAGCTGAGAAGCGCAAAAATGGCGAGGAAGTGAGAAGCACCACAAGAAGTAGTAGTGTGAGCAATGTCAGTGAGGACAGTGCAAGTGCAAGTGCAAGCCACAGTGGAAGAAAATGTCTCAAAATCAGATTTAAATGTAATGCTAGCAGGAGTGAGAGTACTAGTACATGTGAATTATTGAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

344

Amino Acids

38.88

Weight (kDa)

9.16

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 155 - 253 6.5e-13 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13550
prunus_persica Prupe.2G161700_v2.0.a1 Prupe.2G162000_v2.0.a1
rosa_laevigata RLG00000028289
rosa_multiflora Rmu_sc0001207.1_g000082 Rmu_sc0011028.1_g000001
rosa_roxburghii Rroxscaffold_4G00302050
rosa_rugosa Rorug01G0233600
rosa_samantha Rh1AG247500 Rh1BG217300 Rh1CG231000 Rh1DG243400
rosa_wichuraiana Rw0G018090 Rw1G021410 Rw1G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 233
AccII CGCG 1 cut(s) 380
AciI CCGC 3 cut(s) 378, 380, 491
AclWI GGATC 3 cut(s) 70, 604, 778
AcsI RAATTY 1 cut(s) 570
AcuI CTGAAG 1 cut(s) 806
AdeI CACNNNGTG 1 cut(s) 233
AfaI GTAC 5 cut(s) 7, 73, 464, 1006, 1012
AfiI CCNNNNNNNGG 1 cut(s) 233
AflII CTTAAG 1 cut(s) 614
AflIII ACRYGT 2 cut(s) 423, 1013
AgsI TTSAA 4 cut(s) 24, 246, 325, 730
AhlI ACTAGT 1 cut(s) 1007
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 4 cut(s) 661, 697, 705, 851
AluI AGCT 4 cut(s) 661, 697, 705, 851
Alw21I GWGCWC 2 cut(s) 663, 707
Alw26I GTCTC 2 cut(s) 586, 968
AlwI GGATC 3 cut(s) 70, 604, 778
AoxI GGCC 1 cut(s) 375
ApoI RAATTY 1 cut(s) 570
ArsI GACNNNNNNTTYG 2 cut(s) 701, 733
AspLEI GCGC 2 cut(s) 118, 861
AspS9I GGNCC 1 cut(s) 717
AsuHPI GGTGA 7 cut(s) 202, 248, 487, 511, 782, 788, 853
AsuNHI GCTAGC 1 cut(s) 989
AvaII GGWCC 1 cut(s) 717
BaeI ACNNNNGTAYC 1 cut(s) 30
BanII GRGCYC 3 cut(s) 260, 663, 707
Bbv12I GWGCWC 2 cut(s) 663, 707
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 2 cut(s) 586, 968
BcuI ACTAGT 1 cut(s) 1007
BfaI CTAG 2 cut(s) 990, 1008
BfrI CTTAAG 1 cut(s) 614
BisI GCNGC 3 cut(s) 378, 381, 492
BlsI GCNGC 3 cut(s) 379, 382, 493
BmcAI AGTACT 1 cut(s) 1006
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 717
BmgT120I GGNCC 1 cut(s) 717
BmiI GGNNCC 1 cut(s) 719
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 616
BmtI GCTAGC 1 cut(s) 993
BpmI CTGGAG 1 cut(s) 68
BsaBI GATNNNNATC 2 cut(s) 608, 788
BsaI GGTCTC 1 cut(s) 586
BsaJI CCNNGG 2 cut(s) 232, 378
BsaXI ACNNNNNCTCC 4 cut(s) 544, 574, 988, 1018
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 15, 113
Bse3DI GCAATG 2 cut(s) 554, 916
Bse8I GATNNNNATC 2 cut(s) 608, 788
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 232, 378
BseGI GGATG 1 cut(s) 631
BseJI GATNNNNATC 2 cut(s) 608, 788
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 2 cut(s) 554, 916
BseMII CTCAG 4 cut(s) 581, 674, 676, 843
BseNI ACTGG 2 cut(s) 15, 113
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 1 cut(s) 377
BsiHKAI GWGCWC 2 cut(s) 663, 707
BslFI GGGAC 1 cut(s) 703
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 586, 968
BsmFI GGGAC 1 cut(s) 703
BsnI GGCC 1 cut(s) 377
Bso31I GGTCTC 1 cut(s) 586
Bsp1286I GDGCHC 3 cut(s) 260, 663, 707
Bsp143I GATC 7 cut(s) 62, 289, 609, 763, 778, 783, 814
BspACI CCGC 3 cut(s) 378, 380, 491
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 4 cut(s) 582, 675, 675, 844
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 1 cut(s) 719
BspOI GCTAGC 1 cut(s) 993
BspPI GGATC 3 cut(s) 70, 604, 778
BspTI CTTAAG 1 cut(s) 614
BspTNI GGTCTC 1 cut(s) 586
BsrDI GCAATG 2 cut(s) 554, 916
BsrI ACTGG 2 cut(s) 15, 113
BssECI CCNNGG 2 cut(s) 232, 378
BssMI GATC 7 cut(s) 62, 289, 609, 763, 778, 783, 814
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 926, 950
Bst6I CTCTTC 3 cut(s) 392, 666, 839
BstAFI CTTAAG 1 cut(s) 614
BstC8I GCNNGC 2 cut(s) 943, 991
BstDEI CTNAG 5 cut(s) 210, 590, 662, 683, 852
BstDSI CCRYGG 2 cut(s) 232, 378
BstF5I GGATG 1 cut(s) 631
BstFNI CGCG 1 cut(s) 380
BstHHI GCGC 2 cut(s) 118, 861
BstKTI GATC 7 cut(s) 65, 292, 612, 766, 781, 786, 817
BstMAI GTCTC 2 cut(s) 586, 968
BstMBI GATC 7 cut(s) 62, 289, 609, 763, 778, 783, 814
BstMWI GCNNNNNNNGC 3 cut(s) 491, 556, 867
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 2 cut(s) 427, 1017
BstSCI CCNGG 1 cut(s) 84
BstUI CGCG 1 cut(s) 380
BstX2I RGATCY 2 cut(s) 62, 609
BstYI RGATCY 2 cut(s) 62, 609
BsuRI GGCC 1 cut(s) 377
BtgI CCRYGG 2 cut(s) 232, 378
BtsCI GGATG 1 cut(s) 631
BtsIMutI CAGTG 5 cut(s) 8, 680, 922, 931, 955
Cac8I GCNNGC 2 cut(s) 943, 991
CfoI GCGC 2 cut(s) 118, 861
Cfr13I GGNCC 1 cut(s) 717
Cfr42I CCGCGG 1 cut(s) 381
Csp6I GTAC 5 cut(s) 6, 72, 463, 1005, 1011
CviAII CATG 4 cut(s) 146, 342, 424, 1014
CviQI GTAC 5 cut(s) 6, 72, 463, 1005, 1011
DdeI CTNAG 5 cut(s) 210, 590, 662, 683, 852
DpnI GATC 7 cut(s) 64, 291, 611, 765, 780, 785, 816
DpnII GATC 7 cut(s) 62, 289, 609, 763, 778, 783, 814
DraI TTTAAA 1 cut(s) 979
DraIII CACNNNGTG 1 cut(s) 233
Eam1104I CTCTTC 3 cut(s) 392, 666, 839
EarI CTCTTC 3 cut(s) 392, 666, 839
Ecl136II GAGCTC 2 cut(s) 661, 705
Eco24I GRGCYC 3 cut(s) 260, 663, 707
Eco31I GGTCTC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 717
Eco53kI GAGCTC 2 cut(s) 661, 705
Eco57I CTGAAG 1 cut(s) 806
EcoICRI GAGCTC 2 cut(s) 661, 705
EcoO109I RGGNCCY 1 cut(s) 717
EcoRII CCWGG 1 cut(s) 84
EcoT38I GRGCYC 3 cut(s) 260, 663, 707
FaeI CATG 4 cut(s) 149, 345, 427, 1017
FaqI GGGAC 1 cut(s) 703
FatI CATG 4 cut(s) 145, 341, 423, 1013
FauNDI CATATG 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 378, 381, 492
FokI GGATG 1 cut(s) 638
FriOI GRGCYC 3 cut(s) 260, 663, 707
Fsp4HI GCNGC 3 cut(s) 378, 381, 492
FspBI CTAG 2 cut(s) 990, 1008
GlaI GCGC 2 cut(s) 117, 860
GluI GCNGC 3 cut(s) 378, 381, 492
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 377
HhaI GCGC 2 cut(s) 118, 861
Hin1II CATG 4 cut(s) 149, 345, 427, 1017
Hin6I GCGC 2 cut(s) 116, 859
HinP1I GCGC 2 cut(s) 116, 859
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HinfI GANTC 4 cut(s) 193, 544, 742, 1027
HphI GGTGA 7 cut(s) 202, 248, 487, 511, 782, 788, 853
Hpy166II GTNNAC 5 cut(s) 8, 197, 421, 519, 532
Hpy188I TCNGA 5 cut(s) 41, 289, 665, 783, 974
Hpy188III TCNNGA 2 cut(s) 293, 803
Hpy8I GTNNAC 5 cut(s) 8, 197, 421, 519, 532
HpyAV CCTTC 4 cut(s) 160, 409, 616, 767
HpyCH4III ACNGT 2 cut(s) 926, 950
HpyCH4V TGCA 4 cut(s) 579, 929, 935, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 556, 867
HpyF3I CTNAG 5 cut(s) 210, 590, 662, 683, 852
Hsp92II CATG 4 cut(s) 149, 345, 427, 1017
HspAI GCGC 2 cut(s) 116, 859
KspI CCGCGG 1 cut(s) 381
Kzo9I GATC 7 cut(s) 62, 289, 609, 763, 778, 783, 814
LweI GCATC 1 cut(s) 616
MaeI CTAG 2 cut(s) 990, 1008
MalI GATC 7 cut(s) 64, 291, 611, 765, 780, 785, 816
MboI GATC 7 cut(s) 62, 289, 609, 763, 778, 783, 814
MflI RGATCY 2 cut(s) 62, 609
MhlI GDGCHC 3 cut(s) 260, 663, 707
MluCI AATT 4 cut(s) 95, 306, 570, 1019
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 7 cut(s) 92, 97, 127, 367, 570, 865, 913
MseI TTAA 4 cut(s) 615, 636, 753, 978
MspA1I CMGCKG 1 cut(s) 380
MspCI CTTAAG 1 cut(s) 614
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 491, 556, 867
NdeI CATATG 1 cut(s) 123
NdeII GATC 7 cut(s) 62, 289, 609, 763, 778, 783, 814
NheI GCTAGC 1 cut(s) 989
NlaIII CATG 4 cut(s) 149, 345, 427, 1017
NlaIV GGNNCC 1 cut(s) 719
NspI RCATGY 2 cut(s) 427, 1017
PciI ACATGT 2 cut(s) 423, 1013
PfeI GAWTC 2 cut(s) 544, 742
PflMI CCANNNNNTGG 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 3 cut(s) 379, 382, 493
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PpuMI RGGWCCY 1 cut(s) 717
PscI ACATGT 2 cut(s) 423, 1013
Psp124BI GAGCTC 2 cut(s) 663, 707
Psp5II RGGWCCY 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 719
PspPI GGNCC 1 cut(s) 717
PspPPI RGGWCCY 1 cut(s) 717
PsuI RGATCY 2 cut(s) 62, 609
RsaI GTAC 5 cut(s) 7, 73, 464, 1006, 1012
RsaNI GTAC 5 cut(s) 6, 72, 463, 1005, 1011
SacI GAGCTC 2 cut(s) 663, 707
SacII CCGCGG 1 cut(s) 381
SaqAI TTAA 4 cut(s) 615, 636, 753, 978
SatI GCNGC 3 cut(s) 378, 381, 492
Sau3AI GATC 7 cut(s) 62, 289, 609, 763, 778, 783, 814
Sau96I GGNCC 1 cut(s) 717
ScaI AGTACT 1 cut(s) 1006
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 3 cut(s) 260, 663, 707
SfaNI GCATC 1 cut(s) 616
Sfr303I CCGCGG 1 cut(s) 381
SgrBI CCGCGG 1 cut(s) 381
SinI GGWCC 1 cut(s) 717
SmiI ATTTAAAT 1 cut(s) 979
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SpeI ACTAGT 1 cut(s) 1007
Sse9I AATT 4 cut(s) 95, 306, 570, 1019
SsiI CCGC 3 cut(s) 378, 380, 491
SspMI CTAG 2 cut(s) 990, 1008
SstI GAGCTC 2 cut(s) 663, 707
StyD4I CCNGG 1 cut(s) 84
SwaI ATTTAAAT 1 cut(s) 979
TaaI ACNGT 2 cut(s) 926, 950
TaqI TCGA 1 cut(s) 701
TasI AATT 4 cut(s) 95, 306, 570, 1019
TatI WGTACW 3 cut(s) 462, 1004, 1010
TauI GCSGC 3 cut(s) 380, 383, 494
TfiI GAWTC 2 cut(s) 544, 742
Tru1I TTAA 4 cut(s) 615, 636, 753, 978
Tru9I TTAA 4 cut(s) 615, 636, 753, 978
TscAI CASTG 5 cut(s) 15, 687, 922, 931, 955
TspDTI ATGAA 3 cut(s) 110, 428, 726
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 5 cut(s) 15, 687, 922, 931, 955
Van91I CCANNNNNTGG 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 717
XapI RAATTY 1 cut(s) 570
XceI RCATGY 2 cut(s) 427, 1017
XspI CTAG 2 cut(s) 990, 1008
ZrmI AGTACT 1 cut(s) 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.