Rmu_sc0011028.1_g000001

Domain of unknown function (DUF313)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011028.1
OG0016389
Physical Location & Seq
Reverse (-)
150 .. 1124
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011028.1_g000001.1.cds

Sequence Viewer

Length: 975 bp
atgggatctttgagtgcagaaattcacgaggacaagaaattatgcgaggactggtctgcgcttcatatgttggtagaggtttcctgccatgttggcgaagaagaaagaaagggtatgtgcgtgttatctttggtgagtcaacaggtatgccctaagaaacaaaggtcgccaccccgtggtgaaagttcgaaaatgacgagccctatccctaatattgcttctggttcttctgatcaagaaaatagaagaattgatgataagggtttgaaaagaaaaaggaagccatgtgttgattgtcataatgataaagacttggatgccgcggcgaagaagaagaagaagaagagaacgtatatgatgaaggtggacatgggtgtttatcaaccacctcctgatttgcccgaaaagtacaagcaaatggtgaatgggccaaatgcggcattggtgatacaaaagcagttgtttacgagtgatgtgaaccctggcctgaaccggctgacattgccaccaaaacaaattttgtgcaaggagttgctgagacctaatgagatagaaatccttaggccgaaggatgctttgcttaaagttccatttatagacccagagctgagaaaggaagagatttcactgagtttatggaagctgtcgagctcaaatgaaaggtcccttgtgttcaaatctgaatggaatcatattgttaagaagaacgatctgggtgaaggtgatctgatccaaatctggtcatttcgggatagcaacgatcaacttcagttggcacttgttgtggtgaagaaagccgagaagcgcagaagtggtgtggaagtgagaagcaccgcaagaagtagtagtgtgagcaatgtcagtgaggacagtgcaagtgcaagccacagtggaagaaaatgtctcaaaatccgatttaaatgtaatgctagcaggagtgagagtactagtacatgtgaattattgagtcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

324

Amino Acids

36.5

Weight (kDa)

9.29

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13550
prunus_persica Prupe.2G161700_v2.0.a1 Prupe.2G162000_v2.0.a1
rosa_laevigata RLG00000028289
rosa_multiflora Rmu_sc0001207.1_g000082 Rmu_sc0011028.1_g000001
rosa_roxburghii Rroxscaffold_4G00302050
rosa_rugosa Rorug01G0233600
rosa_samantha Rh1AG247500 Rh1BG217300 Rh1CG231000 Rh1DG243400
rosa_wichuraiana Rw0G018090 Rw1G021410 Rw1G021520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AccII CGCG 1 cut(s) 323
AciI CCGC 4 cut(s) 321, 323, 437, 834
AclWI GGATC 2 cut(s) 13, 724
AcsI RAATTY 2 cut(s) 21, 516
AcuI CTGAAG 1 cut(s) 752
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 3 cut(s) 410, 946, 952
AfiI CCNNNNNNNGG 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 953
AgsI TTSAA 2 cut(s) 268, 676
AhlI ACTAGT 1 cut(s) 947
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 3 cut(s) 607, 643, 651
AluI AGCT 3 cut(s) 607, 643, 651
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 2 cut(s) 532, 908
AlwI GGATC 2 cut(s) 13, 724
AoxI GGCC 3 cut(s) 428, 484, 563
ApoI RAATTY 2 cut(s) 21, 516
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AspLEI GCGC 2 cut(s) 61, 807
AspS9I GGNCC 2 cut(s) 428, 663
AsuHPI GGTGA 7 cut(s) 145, 191, 433, 457, 728, 734, 799
AsuII TTCGAA 1 cut(s) 188
AsuNHI GCTAGC 1 cut(s) 929
AvaII GGWCC 1 cut(s) 663
AxyI CCTNAGG 1 cut(s) 560
BanII GRGCYC 2 cut(s) 203, 653
BauI CACGAG 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 653
BciT130I CCWGG 1 cut(s) 483
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 532, 908
BcuI ACTAGT 1 cut(s) 947
BfaI CTAG 2 cut(s) 930, 948
BglI GCCNNNNNGGC 1 cut(s) 93
BisI GCNGC 3 cut(s) 321, 324, 438
BlsI GCNGC 3 cut(s) 322, 325, 439
BmcAI AGTACT 1 cut(s) 946
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 663
BmgT120I GGNCC 2 cut(s) 428, 663
BmiI GGNNCC 1 cut(s) 665
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 2 cut(s) 307, 562
BmtI GCTAGC 1 cut(s) 933
Bpu14I TTCGAA 1 cut(s) 188
BsaBI GATNNNNATC 2 cut(s) 554, 734
BsaI GGTCTC 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 175, 321, 481
BsaXI ACNNNNNCTCC 2 cut(s) 928, 958
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse118I RCCGGY 1 cut(s) 492
Bse1I ACTGG 1 cut(s) 56
Bse21I CCTNAGG 1 cut(s) 560
Bse3DI GCAATG 2 cut(s) 500, 862
Bse8I GATNNNNATC 2 cut(s) 554, 734
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 175, 321, 481
BseGI GGATG 2 cut(s) 322, 577
BseJI GATNNNNATC 2 cut(s) 554, 734
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 2 cut(s) 500, 862
BseMII CTCAG 3 cut(s) 527, 599, 620
BseNI ACTGG 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 3 cut(s) 430, 486, 565
BsiHKAI GWGCWC 1 cut(s) 653
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 532, 908
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 3 cut(s) 430, 486, 565
Bso31I GGTCTC 1 cut(s) 532
Bsp119I TTCGAA 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 203, 653
Bsp143I GATC 6 cut(s) 5, 232, 709, 724, 729, 760
BspACI CCGC 4 cut(s) 321, 323, 437, 834
BspANI GGCC 3 cut(s) 430, 486, 565
BspCNI CTCAG 3 cut(s) 528, 600, 621
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 665
BspOI GCTAGC 1 cut(s) 933
BspPI GGATC 2 cut(s) 13, 724
BspT104I TTCGAA 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 532
BsrDI GCAATG 2 cut(s) 500, 862
BsrFI RCCGGY 1 cut(s) 492
BsrI ACTGG 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 492
BssECI CCNNGG 3 cut(s) 175, 321, 481
BssMI GATC 6 cut(s) 5, 232, 709, 724, 729, 760
BssSI CACGAG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 872, 890
Bst6I CTCTTC 2 cut(s) 338, 612
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 883, 931
BstDEI CTNAG 5 cut(s) 153, 536, 560, 608, 629
BstDSI CCRYGG 2 cut(s) 175, 321
BstF5I GGATG 2 cut(s) 322, 577
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 2 cut(s) 61, 807
BstKTI GATC 6 cut(s) 8, 235, 712, 727, 732, 763
BstMAI GTCTC 2 cut(s) 532, 908
BstMBI GATC 6 cut(s) 5, 232, 709, 724, 729, 760
BstMWI GCNNNNNNNGC 2 cut(s) 93, 502
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 957
BstSCI CCNGG 1 cut(s) 481
BstUI CGCG 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
Bsu36I CCTNAGG 1 cut(s) 560
BsuRI GGCC 3 cut(s) 430, 486, 565
BtgI CCRYGG 2 cut(s) 175, 321
BtsCI GGATG 2 cut(s) 322, 577
BtsIMutI CAGTG 5 cut(s) 626, 868, 877, 895, 970
Cac8I GCNNGC 2 cut(s) 883, 931
CfoI GCGC 2 cut(s) 61, 807
Cfr10I RCCGGY 1 cut(s) 492
Cfr13I GGNCC 2 cut(s) 428, 663
Cfr42I CCGCGG 1 cut(s) 324
Csp6I GTAC 3 cut(s) 409, 945, 951
CviAII CATG 4 cut(s) 89, 285, 370, 954
CviQI GTAC 3 cut(s) 409, 945, 951
DdeI CTNAG 5 cut(s) 153, 536, 560, 608, 629
DpnI GATC 6 cut(s) 7, 234, 711, 726, 731, 762
DpnII GATC 6 cut(s) 5, 232, 709, 724, 729, 760
DraI TTTAAA 1 cut(s) 919
DraIII CACNNNGTG 1 cut(s) 176
Eam1104I CTCTTC 2 cut(s) 338, 612
EarI CTCTTC 2 cut(s) 338, 612
Ecl136II GAGCTC 1 cut(s) 651
Eco24I GRGCYC 2 cut(s) 203, 653
Eco31I GGTCTC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 663
Eco53kI GAGCTC 1 cut(s) 651
Eco57I CTGAAG 1 cut(s) 752
Eco81I CCTNAGG 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 651
EcoO109I RGGNCCY 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 481
EcoT38I GRGCYC 2 cut(s) 203, 653
FaeI CATG 4 cut(s) 92, 288, 373, 957
FaqI GGGAC 1 cut(s) 649
FatI CATG 4 cut(s) 88, 284, 369, 953
FauNDI CATATG 1 cut(s) 66
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 321, 324, 438
FokI GGATG 2 cut(s) 329, 584
FriOI GRGCYC 2 cut(s) 203, 653
Fsp4HI GCNGC 3 cut(s) 321, 324, 438
FspBI CTAG 2 cut(s) 930, 948
GlaI GCGC 2 cut(s) 60, 806
GluI GCNGC 3 cut(s) 321, 324, 438
HaeIII GGCC 3 cut(s) 430, 486, 565
HapII CCGG 1 cut(s) 493
HhaI GCGC 2 cut(s) 61, 807
Hin1II CATG 4 cut(s) 92, 288, 373, 957
Hin6I GCGC 2 cut(s) 59, 805
HinP1I GCGC 2 cut(s) 59, 805
HincII GTYRAC 1 cut(s) 140
HindII GTYRAC 1 cut(s) 140
HinfI GANTC 3 cut(s) 136, 688, 967
HpaII CCGG 1 cut(s) 493
HphI GGTGA 7 cut(s) 145, 191, 433, 457, 728, 734, 799
Hpy166II GTNNAC 4 cut(s) 140, 367, 465, 478
Hpy188I TCNGA 4 cut(s) 232, 682, 729, 914
Hpy188III TCNNGA 4 cut(s) 26, 236, 392, 749
Hpy8I GTNNAC 4 cut(s) 140, 367, 465, 478
HpyAV CCTTC 3 cut(s) 355, 562, 713
HpyCH4III ACNGT 2 cut(s) 872, 890
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 4 cut(s) 17, 525, 875, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 502
HpyF3I CTNAG 5 cut(s) 153, 536, 560, 608, 629
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 4 cut(s) 92, 288, 373, 957
HspAI GCGC 2 cut(s) 59, 805
Ksp22I TGATCA 1 cut(s) 232
KspI CCGCGG 1 cut(s) 324
Kzo9I GATC 6 cut(s) 5, 232, 709, 724, 729, 760
LweI GCATC 2 cut(s) 307, 562
MaeI CTAG 2 cut(s) 930, 948
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 968
MalI GATC 6 cut(s) 7, 234, 711, 726, 731, 762
MboI GATC 6 cut(s) 5, 232, 709, 724, 729, 760
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 2 cut(s) 203, 653
MluCI AATT 5 cut(s) 21, 38, 249, 516, 959
MlyI GAGTC 1 cut(s) 145
MnlI CCTC 5 cut(s) 22, 40, 70, 399, 859
MseI TTAA 3 cut(s) 582, 699, 918
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 93, 502
NdeI CATATG 1 cut(s) 66
NdeII GATC 6 cut(s) 5, 232, 709, 724, 729, 760
NheI GCTAGC 1 cut(s) 929
NlaIII CATG 4 cut(s) 92, 288, 373, 957
NlaIV GGNNCC 1 cut(s) 665
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 1 cut(s) 968
NspI RCATGY 1 cut(s) 957
NspV TTCGAA 1 cut(s) 188
PciI ACATGT 1 cut(s) 953
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PfeI GAWTC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 3 cut(s) 322, 325, 439
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PpuMI RGGWCCY 1 cut(s) 663
PscI ACATGT 1 cut(s) 953
Psp124BI GAGCTC 1 cut(s) 653
Psp5II RGGWCCY 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 665
PspPI GGNCC 2 cut(s) 428, 663
PspPPI RGGWCCY 1 cut(s) 663
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 3 cut(s) 410, 946, 952
RsaNI GTAC 3 cut(s) 409, 945, 951
SacI GAGCTC 1 cut(s) 653
SacII CCGCGG 1 cut(s) 324
SaqAI TTAA 3 cut(s) 582, 699, 918
SatI GCNGC 3 cut(s) 321, 324, 438
Sau3AI GATC 6 cut(s) 5, 232, 709, 724, 729, 760
Sau96I GGNCC 2 cut(s) 428, 663
ScaI AGTACT 1 cut(s) 946
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 2 cut(s) 203, 653
SfaNI GCATC 2 cut(s) 307, 562
Sfr303I CCGCGG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 188
SgrBI CCGCGG 1 cut(s) 324
SinI GGWCC 1 cut(s) 663
SmiI ATTTAAAT 1 cut(s) 919
SpeI ACTAGT 1 cut(s) 947
Sse9I AATT 5 cut(s) 21, 38, 249, 516, 959
SsiI CCGC 4 cut(s) 321, 323, 437, 834
SspI AATATT 1 cut(s) 214
SspMI CTAG 2 cut(s) 930, 948
SstI GAGCTC 1 cut(s) 653
StyD4I CCNGG 1 cut(s) 481
SwaI ATTTAAAT 1 cut(s) 919
TaaI ACNGT 2 cut(s) 872, 890
TaiI ACGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 188, 647
TasI AATT 5 cut(s) 21, 38, 249, 516, 959
TatI WGTACW 3 cut(s) 408, 944, 950
TauI GCSGC 3 cut(s) 323, 326, 440
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 3 cut(s) 582, 699, 918
Tru9I TTAA 3 cut(s) 582, 699, 918
TscAI CASTG 4 cut(s) 633, 868, 877, 895
TseFI GTSAC 1 cut(s) 968
Tsp45I GTSAC 1 cut(s) 968
TspDTI ATGAA 3 cut(s) 53, 374, 672
TspRI CASTG 4 cut(s) 633, 868, 877, 895
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 663
XapI RAATTY 2 cut(s) 21, 516
XceI RCATGY 1 cut(s) 957
XspI CTAG 2 cut(s) 930, 948
ZrmI AGTACT 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.