FvH4_7g13961

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0018475
Physical Location & Seq
Forward (+)
12425715 .. 12426275
561 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13961.t1

Sequence Viewer

Length: 561 bp
ATGAAGAGCTTCCTTTCAAGAGAGTCTATTCTTGTCATTATGCTTTTAGTAATCTGCTTCGTTGCTAAAGCTCAGAAATGTCATCCAAGTGGAATGATAAGAGGAAAGAAATCCCCTTCTGGAGACTGTAACCAGGAGCAAGACCCTGATTGTTGTAGACCAGGCAAAATGTACCCAACCTATACATGCTCACCGCCTGTCTCCAAGAACACCCACGCCTACCTTACTCTAACCAGTTTCGAGGCAGGTGGTGATGGCAGCCTTCCATCAGAATGCGATAACAAATACCACAATGACAGCAGCCCGATCGTAGCATTGTCGACTGGATGGTACAAGAATGGAGGAAGGTGCCATAGCAACATTAAAATTACTGGTAATGGTCGCAGTGTGTTGGCCATGGTGGTGGATGAATGTGACTCTACTAGGGGATGTGATGCAGATCATGACTACCTACCTCCTTGTGCTAACAACCTTGTTGTTGCCTCCAAGGCTGTTTGGGAAGGCTTGCATGTGTCTAAAGAAAACTGGGGCGGCTTAGATATCACATGGACCGACGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.19

Weight (kDa)

6.28

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 20 - 186 8.8e-55 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018475)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13961
rosa_chinensis RchiOBHm_Chr1g0354461
rosa_laevigata RLG00000009352 RLG00000028215
rosa_multiflora Rmu_sc0002737.1_g000007
rosa_roxburghii Rroxscaffold_4G00301020
rosa_rugosa Rorug01G0243100
rosa_samantha Rh1AG253700 Rh1DG252600
rosa_wichuraiana Rw1G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 348
AccI GTMKAC 2 cut(s) 157, 320
AciI CCGC 2 cut(s) 194, 531
AcoI YGGCCR 1 cut(s) 393
AfaI GTAC 2 cut(s) 173, 332
AgsI TTSAA 1 cut(s) 18
AjnI CCWGG 2 cut(s) 132, 160
AluBI AGCT 2 cut(s) 9, 71
AluI AGCT 2 cut(s) 9, 71
Alw26I GTCTC 2 cut(s) 117, 205
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 258, 300
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 549
AsuHPI GGTGA 2 cut(s) 183, 263
AvaII GGWCC 1 cut(s) 549
BalI TGGCCA 1 cut(s) 395
BanI GGYRCC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 270, 312
BccI CCATC 3 cut(s) 248, 274, 321
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 2 cut(s) 134, 162
BcoDI GTCTC 2 cut(s) 117, 205
BfaI CTAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 3 cut(s) 259, 301, 532
BlsI GCNGC 3 cut(s) 260, 302, 533
Bme1390I CCNGG 2 cut(s) 134, 162
Bme18I GGWCC 1 cut(s) 549
BmgT120I GGNCC 1 cut(s) 549
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 2 cut(s) 134, 162
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 2 cut(s) 396, 486
Bse1I ACTGG 4 cut(s) 234, 328, 376, 530
Bse8I GATNNNNATC 1 cut(s) 438
BseBI CCWGG 2 cut(s) 134, 162
BseDI CCNNGG 2 cut(s) 396, 486
BseGI GGATG 4 cut(s) 82, 332, 412, 434
BseJI GATNNNNATC 1 cut(s) 438
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 4 cut(s) 234, 328, 376, 530
BseXI GCAGC 2 cut(s) 270, 312
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 117, 205
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 1 cut(s) 395
Bsp143I GATC 2 cut(s) 306, 439
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 194, 531
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 85
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 350
BspMI ACCTGC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 348
BsrI ACTGG 4 cut(s) 234, 328, 376, 530
BssECI CCNNGG 2 cut(s) 396, 486
BssMI GATC 2 cut(s) 306, 439
BssT1I CCWWGG 2 cut(s) 396, 486
Bst2UI CCWGG 2 cut(s) 134, 162
Bst4CI ACNGT 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 2 cut(s) 72, 535
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 4 cut(s) 82, 332, 412, 434
BstKTI GATC 2 cut(s) 309, 442
BstMAI GTCTC 2 cut(s) 117, 205
BstMBI GATC 2 cut(s) 306, 439
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 2 cut(s) 134, 162
BstNSI RCATGY 2 cut(s) 189, 512
BstSCI CCNGG 2 cut(s) 132, 160
BstV1I GCAGC 2 cut(s) 270, 312
BstXI CCANNNNNNTGG 1 cut(s) 403
BsuRI GGCC 1 cut(s) 395
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 4 cut(s) 82, 332, 412, 434
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 391
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 506
CciI TCATGA 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 549
Csp6I GTAC 2 cut(s) 172, 331
CviAII CATG 5 cut(s) 186, 397, 443, 509, 546
CviJI RGCY 8 cut(s) 9, 71, 261, 303, 395, 491, 504, 534
CviKI_1 RGCY 8 cut(s) 9, 71, 261, 303, 395, 491, 504, 534
CviQI GTAC 2 cut(s) 172, 331
DdeI CTNAG 2 cut(s) 72, 535
DpnI GATC 2 cut(s) 308, 441
DpnII GATC 2 cut(s) 306, 439
EaeI YGGCCR 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 396, 486
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 549
EcoRII CCWGG 2 cut(s) 132, 160
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 396, 486
ErhI CCWWGG 2 cut(s) 396, 486
FaeI CATG 5 cut(s) 189, 400, 446, 512, 549
FaiI YATR 8 cut(s) 41, 183, 187, 354, 398, 444, 510, 547
FatI CATG 5 cut(s) 185, 396, 442, 508, 545
FblI GTMKAC 2 cut(s) 157, 320
Fnu4HI GCNGC 3 cut(s) 259, 301, 532
FokI GGATG 4 cut(s) 69, 339, 419, 441
Fsp4HI GCNGC 3 cut(s) 259, 301, 532
FspBI CTAG 1 cut(s) 423
GluI GCNGC 3 cut(s) 259, 301, 532
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 395
Hin1II CATG 5 cut(s) 189, 400, 446, 512, 549
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HinfI GANTC 2 cut(s) 23, 416
HphI GGTGA 2 cut(s) 183, 263
Hpy166II GTNNAC 2 cut(s) 158, 321
Hpy188I TCNGA 2 cut(s) 75, 271
Hpy188III TCNNGA 3 cut(s) 18, 120, 443
Hpy8I GTNNAC 2 cut(s) 158, 321
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 126, 272, 339, 494
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 437, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 2 cut(s) 72, 535
Hsp92II CATG 5 cut(s) 189, 400, 446, 512, 549
Kzo9I GATC 2 cut(s) 306, 439
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 2 cut(s) 270, 312
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 2 cut(s) 128, 413
MalI GATC 2 cut(s) 308, 441
MboI GATC 2 cut(s) 306, 439
MboII GAAGA 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 1 cut(s) 366
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 2 cut(s) 32, 410
MnlI CCTC 5 cut(s) 95, 235, 335, 465, 493
Mox20I TGGCCA 1 cut(s) 395
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 363, 559
MslI CAYNNNNRTG 3 cut(s) 87, 271, 401
Msp20I TGGCCA 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 134, 162
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 2 cut(s) 134, 162
MwoI GCNNNNNNNGC 1 cut(s) 488
NcoI CCATGG 1 cut(s) 396
NdeII GATC 2 cut(s) 306, 439
NlaIII CATG 5 cut(s) 189, 400, 446, 512, 549
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 2 cut(s) 189, 512
PagI TCATGA 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 236
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 260, 302, 533
Ple19I CGATCG 1 cut(s) 309
PleI GAGTC 2 cut(s) 31, 410
PpsI GAGTC 2 cut(s) 31, 410
Psp6I CCWGG 2 cut(s) 132, 160
PspGI CCWGG 2 cut(s) 132, 160
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 549
PvuI CGATCG 1 cut(s) 309
RsaI GTAC 2 cut(s) 173, 332
RsaNI GTAC 2 cut(s) 172, 331
RseI CAYNNNNRTG 3 cut(s) 87, 271, 401
SalI GTCGAC 1 cut(s) 319
SaqAI TTAA 2 cut(s) 363, 559
SatI GCNGC 3 cut(s) 259, 301, 532
Sau3AI GATC 2 cut(s) 306, 439
Sau96I GGNCC 1 cut(s) 549
SchI GAGTC 2 cut(s) 32, 410
ScrFI CCNGG 2 cut(s) 134, 162
SetI ASST 9 cut(s) 11, 73, 182, 225, 250, 350, 453, 457, 474
SfaNI GCATC 1 cut(s) 424
SinI GGWCC 1 cut(s) 549
SmiMI CAYNNNNRTG 3 cut(s) 87, 271, 401
Sse9I AATT 1 cut(s) 366
SsiI CCGC 2 cut(s) 194, 531
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 2 cut(s) 132, 160
StyI CCWWGG 2 cut(s) 396, 486
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 240, 320
TasI AATT 1 cut(s) 366
TauI GCSGC 1 cut(s) 534
Tru1I TTAA 2 cut(s) 363, 559
Tru9I TTAA 2 cut(s) 363, 559
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 258, 300
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 17, 423
TspRI CASTG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 549
XceI RCATGY 2 cut(s) 189, 512
XmiI GTMKAC 2 cut(s) 157, 320
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.