Rorug01G0243100

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018475
Physical Location & Seq
Reverse (-)
34851178 .. 34851495
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0243100.1

Sequence Viewer

Length: 318 bp
ATGGAGTTCTTTGCATCACAGACTCCAGATCGATTGAAGAGCTTGGGCATGGCCCTGTCCATGTTTTCGTCATTAATAGGTTGTTACGTGGCTAGCATGATCTTAACAGTGGTGATGAAGATCACGACAAAGAATGGGGAGACCGGTTGGGTTCCTCCAAATCTGAATGATGGTCATTTGGACAGGTTTTTCTTTCTATATGCTGGTTTAACCGCACTCAACTTGGCATTCTATGTTGTCTGTGCCAAGCAGTGTTTTAAAAGGCTGAGGCGTAGCCGAGGCGTTTTCGGGAGAGCCTCAACAAGGCGTTCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.78

Weight (kDa)

10.23

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018475)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13961
rosa_chinensis RchiOBHm_Chr1g0354461
rosa_laevigata RLG00000009352 RLG00000028215
rosa_multiflora Rmu_sc0002737.1_g000007
rosa_roxburghii Rroxscaffold_4G00301020
rosa_rugosa Rorug01G0243100
rosa_samantha Rh1AG253700 Rh1DG252600
rosa_wichuraiana Rw1G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 303
AgeI ACCGGT 1 cut(s) 143
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 134
AoxI GGCC 1 cut(s) 51
AseI ATTAAT 1 cut(s) 74
AsiGI ACCGGT 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 124
AsuNHI GCTAGC 1 cut(s) 92
BbvCI CCTCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 153
BmsI GCATC 1 cut(s) 23
BmtI GCTAGC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 266
Bsa29I ATCGAT 1 cut(s) 31
BsaAI YACGTR 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 277
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 303
Bse118I RCCGGY 1 cut(s) 143
Bse8I GATNNNNATC 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 277
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 257
BshFI GGCC 1 cut(s) 53
BshTI ACCGGT 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 31
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 28, 99, 120
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 258
BspDI ATCGAT 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 153
BspOI GCTAGC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 3 cut(s) 28, 99, 120
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 266
BstENI CCTNNNNNAGG 1 cut(s) 301
BstKTI GATC 3 cut(s) 31, 102, 123
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 3 cut(s) 28, 99, 120
Bsu15I ATCGAT 1 cut(s) 31
BsuRI GGCC 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 114, 257
Cac8I GCNNGC 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 52
ClaI ATCGAT 1 cut(s) 31
CspAI ACCGGT 1 cut(s) 143
CviAII CATG 3 cut(s) 49, 61, 97
CviJI RGCY 6 cut(s) 42, 53, 92, 265, 276, 296
CviKI_1 RGCY 6 cut(s) 42, 53, 92, 265, 276, 296
DdeI CTNAG 1 cut(s) 266
DpnI GATC 3 cut(s) 30, 101, 122
DpnII GATC 3 cut(s) 28, 99, 120
DraI TTTAAA 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 301
FaeI CATG 3 cut(s) 52, 64, 100
FaiI YATR 6 cut(s) 50, 62, 98, 199, 201, 234
FatI CATG 3 cut(s) 48, 60, 96
FspBI CTAG 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 9
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 144
Hin1II CATG 3 cut(s) 52, 64, 100
HinfI GANTC 1 cut(s) 22
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 26, 124, 289
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 3 cut(s) 52, 64, 100
Kzo9I GATC 3 cut(s) 28, 99, 120
LguI GCTCTTC 1 cut(s) 32
LpnPI CCDG 5 cut(s) 39, 68, 157, 169, 189
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 83
MalI GATC 3 cut(s) 30, 101, 122
MboI GATC 3 cut(s) 28, 99, 120
MboII GAAGA 2 cut(s) 49, 130
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 4 cut(s) 165, 261, 272, 307
MseI TTAA 4 cut(s) 74, 104, 209, 258
MspI CCGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 227
NdeII GATC 3 cut(s) 28, 99, 120
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 3 cut(s) 52, 64, 100
NlaIV GGNNCC 1 cut(s) 153
NmeAIII GCCGAG 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 32
PctI GAATGC 1 cut(s) 227
PinAI ACCGGT 1 cut(s) 143
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 4 cut(s) 74, 104, 209, 258
Sau3AI GATC 3 cut(s) 28, 99, 120
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 16
SetI ASST 4 cut(s) 44, 82, 90, 188
SfaNI GCATC 1 cut(s) 23
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 31
Tru1I TTAA 4 cut(s) 74, 104, 209, 258
Tru9I TTAA 4 cut(s) 74, 104, 209, 258
TscAI CASTG 2 cut(s) 114, 257
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 2 cut(s) 114, 257
VspI ATTAAT 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 301
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.