Rmu_sc0002737.1_g000007

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002737.1
OG0018475
Physical Location & Seq
Reverse (-)
46668 .. 47135
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002737.1_g000007.1.cds

Sequence Viewer

Length: 468 bp
atgataagaggaaagaagtctccttctggacaatgtaaccaggagcaagaccctgactgttgtagaccgggtaaaatgtacccgacctacacatgctcgcccgcagtgtctgggaacacccacgcctacctcactctcaacagtttcgaggcaggtggtgatggcagacttccatcagaatgtgataacaaataccacaatgacagcactccaatcgtggcactctccactggatggtacaagaatggaggaaggtgccataacaacattaaaattactgctaatgatcgcagtgtggtggccatggtggtagatgaatgtgactctactaggggatgtgatgcagatcatgactacctgcctccttgtgctaacaacattattgttgcctccaaggctgtttgggaaggcttgcatgtgtctaaagaaaactggggcggattagatgtcacctggaatgacgcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.87

Weight (kDa)

5.42

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018475)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13961
rosa_chinensis RchiOBHm_Chr1g0354461
rosa_laevigata RLG00000009352 RLG00000028215
rosa_multiflora Rmu_sc0002737.1_g000007
rosa_roxburghii Rroxscaffold_4G00301020
rosa_rugosa Rorug01G0243100
rosa_samantha Rh1AG253700 Rh1DG252600
rosa_wichuraiana Rw1G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 2 cut(s) 143, 366
AccB1I GGYRCC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 234
AccI GTMKAC 1 cut(s) 64
AciI CCGC 2 cut(s) 102, 438
AcoI YGGCCR 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 80, 239
AfiI CCNNNNNNNGG 1 cut(s) 234
AjnI CCWGG 2 cut(s) 39, 452
Alw26I GTCTC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 1 cut(s) 300
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 170, 442
BalI TGGCCA 1 cut(s) 302
BanI GGYRCC 1 cut(s) 255
BccI CCATC 3 cut(s) 155, 181, 228
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 2 cut(s) 41, 454
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 330
BfuAI ACCTGC 2 cut(s) 143, 366
BglI GCCNNNNNGGC 1 cut(s) 395
Bme1390I CCNGG 3 cut(s) 41, 69, 454
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 3 cut(s) 41, 69, 454
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 442
BpuMI CCSGG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 303, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 235, 437
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 2 cut(s) 41, 454
BseDI CCNNGG 2 cut(s) 303, 393
BseGI GGATG 2 cut(s) 239, 341
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 235, 437
BshFI GGCC 1 cut(s) 302
BshNI GGYRCC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 286, 346
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 2 cut(s) 102, 438
BspANI GGCC 1 cut(s) 302
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 257
BspMI ACCTGC 2 cut(s) 143, 366
BspT107I GGYRCC 1 cut(s) 255
BsrI ACTGG 2 cut(s) 235, 437
BssECI CCNNGG 2 cut(s) 303, 393
BssMI GATC 2 cut(s) 286, 346
BssNI GRCGYC 1 cut(s) 462
BssT1I CCWWGG 2 cut(s) 303, 393
Bst2UI CCWGG 2 cut(s) 41, 454
Bst4CI ACNGT 2 cut(s) 59, 143
BstACI GRCGYC 1 cut(s) 462
BstC8I GCNNGC 3 cut(s) 98, 102, 413
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 239, 341
BstKTI GATC 2 cut(s) 289, 349
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 286, 346
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 2 cut(s) 41, 454
BstNSI RCATGY 2 cut(s) 96, 419
BstSCI CCNGG 3 cut(s) 39, 67, 452
BsuRI GGCC 1 cut(s) 302
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 2 cut(s) 239, 341
BtsI GCAGTG 2 cut(s) 111, 298
BtsIMutI CAGTG 3 cut(s) 111, 228, 298
BveI ACCTGC 2 cut(s) 143, 366
Cac8I GCNNGC 3 cut(s) 98, 102, 413
CaiI CAGNNNCTG 1 cut(s) 110
CciI TCATGA 1 cut(s) 349
Csp6I GTAC 2 cut(s) 79, 238
CviAII CATG 4 cut(s) 93, 304, 350, 416
CviJI RGCY 3 cut(s) 302, 398, 411
CviKI_1 RGCY 3 cut(s) 302, 398, 411
CviQI GTAC 2 cut(s) 79, 238
DpnI GATC 2 cut(s) 288, 348
DpnII GATC 2 cut(s) 286, 346
EaeI YGGCCR 1 cut(s) 300
EciI GGCGGA 1 cut(s) 453
Eco130I CCWWGG 2 cut(s) 303, 393
EcoRII CCWGG 2 cut(s) 39, 452
EcoT14I CCWWGG 2 cut(s) 303, 393
ErhI CCWWGG 2 cut(s) 303, 393
FaeI CATG 4 cut(s) 96, 307, 353, 419
FaiI YATR 5 cut(s) 94, 261, 305, 351, 417
FatI CATG 4 cut(s) 92, 303, 349, 415
FauI CCCGC 1 cut(s) 109
FblI GTMKAC 1 cut(s) 64
FokI GGATG 2 cut(s) 246, 348
FspBI CTAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 302
HapII CCGG 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 4 cut(s) 96, 307, 353, 419
HinfI GANTC 1 cut(s) 323
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 170, 442
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 2 cut(s) 27, 350
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 33, 246, 401
HpyCH4III ACNGT 2 cut(s) 59, 143
HpyCH4V TGCA 2 cut(s) 344, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 4 cut(s) 96, 307, 353, 419
Kzo9I GATC 2 cut(s) 286, 346
LmnI GCTCC 1 cut(s) 43
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 3 cut(s) 35, 320, 448
MalI GATC 2 cut(s) 288, 348
MboI GATC 2 cut(s) 286, 346
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 1 cut(s) 273
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 5 cut(s) 140, 142, 242, 372, 400
Mox20I TGGCCA 1 cut(s) 302
MscI TGGCCA 1 cut(s) 302
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 1 cut(s) 178
Msp20I TGGCCA 1 cut(s) 302
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 3 cut(s) 41, 69, 454
MvaI CCWGG 2 cut(s) 41, 454
MwoI GCNNNNNNNGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 303
NdeII GATC 2 cut(s) 286, 346
NlaIII CATG 4 cut(s) 96, 307, 353, 419
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 2 cut(s) 320, 448
NspI RCATGY 2 cut(s) 96, 419
PagI TCATGA 1 cut(s) 349
PaqCI CACCTGC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 234
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 39, 452
PspGI CCWGG 2 cut(s) 39, 452
PspN4I GGNNCC 1 cut(s) 257
PstNI CAGNNNCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 80, 239
RsaNI GTAC 2 cut(s) 79, 238
RseI CAYNNNNRTG 1 cut(s) 178
SaqAI TTAA 1 cut(s) 270
Sau3AI GATC 2 cut(s) 286, 346
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 41, 69, 454
SetI ASST 6 cut(s) 89, 132, 157, 257, 360, 455
SfaNI GCATC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 178
Sse9I AATT 1 cut(s) 273
SsiI CCGC 2 cut(s) 102, 438
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 39, 67, 452
StyI CCWWGG 2 cut(s) 303, 393
TaaI ACNGT 2 cut(s) 59, 143
TaqI TCGA 1 cut(s) 147
TasI AATT 1 cut(s) 273
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 3 cut(s) 111, 235, 298
TseFI GTSAC 2 cut(s) 320, 448
Tsp45I GTSAC 2 cut(s) 320, 448
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 3 cut(s) 111, 235, 298
Van91I CCANNNNNTGG 1 cut(s) 234
XceI RCATGY 2 cut(s) 96, 419
XmiI GTMKAC 1 cut(s) 64
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.