Rh1DG252600

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018475
Physical Location & Seq
Forward (+)
46651390 .. 46652477
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG252600.1

Sequence Viewer

Length: 345 bp
ATGATGCCCGCGATTACGCAGACTTTGCTGTCAGGCCGTGCCGACCTTCCATCAGAATGCGATAACAAATACCACAATGACAGCACTCCAATCGTGGCACTCTCCACTGGATGGTACAAGAATGGAGGAAGGTGCCATAACAACATTAAAATTACTGCTAATGATCGCAGTGTGGTGGCCATGGTGGTAGATGAATGTGACTCTACAAGGGGATGTGATGCAGATCATGACTACCTGCCTCCTTGTGCTAACAACATTATTGTTGCCTCCAAGGCTGTTTGGGAAGGCTTGCATGTGTCTAAAGAAAACTGGGGCGGATTAGATGTCACCTGGAATGACGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.45

Weight (kDa)

4.93

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 18 - 114 8.8e-30 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018475)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13961
rosa_chinensis RchiOBHm_Chr1g0354461
rosa_laevigata RLG00000009352 RLG00000028215
rosa_multiflora Rmu_sc0002737.1_g000007
rosa_roxburghii Rroxscaffold_4G00301020
rosa_rugosa Rorug01G0243100
rosa_samantha Rh1AG253700 Rh1DG252600
rosa_wichuraiana Rw1G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 111
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 9, 315
AcoI YGGCCR 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 111
AjnI CCWGG 1 cut(s) 329
AoxI GGCC 2 cut(s) 34, 177
AsuHPI GGTGA 1 cut(s) 319
BalI TGGCCA 1 cut(s) 179
BanI GGYRCC 1 cut(s) 132
BccI CCATC 2 cut(s) 58, 105
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 331
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 180, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 112, 314
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 180, 270
BseGI GGATG 2 cut(s) 116, 218
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 112, 314
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 36, 179
BshNI GGYRCC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 111
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 2 cut(s) 36, 179
Bsp143I GATC 2 cut(s) 163, 223
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 2 cut(s) 9, 315
BspANI GGCC 2 cut(s) 36, 179
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 134
BspMI ACCTGC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 132
BsrI ACTGG 2 cut(s) 112, 314
BssECI CCNNGG 2 cut(s) 180, 270
BssMI GATC 2 cut(s) 163, 223
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 2 cut(s) 180, 270
Bst2UI CCWGG 1 cut(s) 331
BstACI GRCGYC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 9, 290
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 116, 218
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 2 cut(s) 166, 226
BstMBI GATC 2 cut(s) 163, 223
BstMWI GCNNNNNNNGC 2 cut(s) 25, 272
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 329
BstUI CGCG 1 cut(s) 11
BsuRI GGCC 2 cut(s) 36, 179
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 116, 218
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 105, 175
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 9, 290
CciI TCATGA 1 cut(s) 226
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 181, 227, 293
CviJI RGCY 4 cut(s) 36, 179, 275, 288
CviKI_1 RGCY 4 cut(s) 36, 179, 275, 288
CviQI GTAC 1 cut(s) 115
DpnI GATC 2 cut(s) 165, 225
DpnII GATC 2 cut(s) 163, 223
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 177
EciI GGCGGA 1 cut(s) 330
Eco130I CCWWGG 2 cut(s) 180, 270
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 180, 270
ErhI CCWWGG 2 cut(s) 180, 270
FaeI CATG 3 cut(s) 184, 230, 296
FaiI YATR 4 cut(s) 138, 182, 228, 294
FatI CATG 3 cut(s) 180, 226, 292
FauI CCCGC 1 cut(s) 16
FokI GGATG 2 cut(s) 123, 225
HaeIII GGCC 2 cut(s) 36, 179
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 3 cut(s) 184, 230, 296
HinfI GANTC 1 cut(s) 200
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 56, 123, 278
HpyCH4V TGCA 2 cut(s) 221, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 272
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 3 cut(s) 184, 230, 296
Kzo9I GATC 2 cut(s) 163, 223
LpnPI CCDG 5 cut(s) 18, 93, 248, 295, 316
LweI GCATC 1 cut(s) 208
MaeIII GTNAC 2 cut(s) 197, 325
MalI GATC 2 cut(s) 165, 225
MboI GATC 2 cut(s) 163, 223
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 1 cut(s) 150
MluNI TGGCCA 1 cut(s) 179
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 3 cut(s) 119, 249, 277
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 55
Msp20I TGGCCA 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 25, 272
NcoI CCATGG 1 cut(s) 180
NdeII GATC 2 cut(s) 163, 223
NlaIII CATG 3 cut(s) 184, 230, 296
NlaIV GGNNCC 1 cut(s) 134
NmuCI GTSAC 2 cut(s) 197, 325
NspI RCATGY 1 cut(s) 296
PagI TCATGA 1 cut(s) 226
PctI GAATGC 1 cut(s) 62
PflMI CCANNNNNTGG 1 cut(s) 111
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 329
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 134
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 55
SaqAI TTAA 1 cut(s) 147
Sau3AI GATC 2 cut(s) 163, 223
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 331
SetI ASST 4 cut(s) 48, 134, 237, 332
SfaNI GCATC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 55
Sse9I AATT 1 cut(s) 150
SsiI CCGC 2 cut(s) 9, 315
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 2 cut(s) 180, 270
TasI AATT 1 cut(s) 150
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 2 cut(s) 112, 175
TseFI GTSAC 2 cut(s) 197, 325
Tsp45I GTSAC 2 cut(s) 197, 325
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 2 cut(s) 112, 175
Van91I CCANNNNNTGG 1 cut(s) 111
XceI RCATGY 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.