Rw1G022210

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0018475
Physical Location & Seq
Forward (+)
47065208 .. 47065768
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G022210.1

Sequence Viewer

Length: 561 bp
ATGAAGAGCTTCCTTTCAAGAGAGTCTATTCTTGTCATTATGCTTTTAGCGATTTGCTTTGTTAGTGAAGCTCAAAAATGTCGTCCAAGTGGAATGATAAGAGGAAAGAAGTCTCCTTCTGGACAATGTAACGAGGAGCAAGACCCTGACTGTTGTAGACCGGGAAAAATGTACCCGACTTACACATGCTCGCCCGCGGTGTCTGGGAATACCCACGCCTACCTCACTCTCAACAGTTTCGAGGCAGGTGGTGATGGCAGCCTTCCATCAGAATGCGATAACAAATACCACAATGACAGCACTCCAATCGTAGCACTCTCCACTGGATGGTACAAGAATGGAGGAAGGTGCCATAACAACATTAAAATTACTGCTAATGGTCACAGTGTGGTGACCATGGTGGTGGATGAATGTGACTCTACTAGGGGATGTGATGCAGACCATGACTACCTACCTCCTTGTGCTAACAACATTATTGTTGCCTCCAAGGCTGTTTGGGAAGGCTTGCATGTGTCTAAAGAAAACTGGGGCGGCTTAGATATCACATGGAACGACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.22

Weight (kDa)

5.62

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 16 - 185 3.1e-56 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018475)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g13961
rosa_chinensis RchiOBHm_Chr1g0354461
rosa_laevigata RLG00000009352 RLG00000028215
rosa_multiflora Rmu_sc0002737.1_g000007
rosa_roxburghii Rroxscaffold_4G00301020
rosa_rugosa Rorug01G0243100
rosa_samantha Rh1AG253700 Rh1DG252600
rosa_wichuraiana Rw1G022210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 348
AccB7I CCANNNNNTGG 1 cut(s) 327
AccI GTMKAC 1 cut(s) 157
AccII CGCG 1 cut(s) 197
AciI CCGC 3 cut(s) 195, 197, 531
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 2 cut(s) 173, 332
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 1 cut(s) 18
AluBI AGCT 2 cut(s) 9, 71
AluI AGCT 2 cut(s) 9, 71
Alw26I GTCTC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 258
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
Asp700I GAANNNNTTC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 263, 403
BanI GGYRCC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 270
BccI CCATC 3 cut(s) 248, 274, 321
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 2 cut(s) 259, 532
BlsI GCNGC 2 cut(s) 260, 533
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 535
BpuMI CCSGG 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 195, 396, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 328, 530
BseDI CCNNGG 3 cut(s) 195, 396, 486
BseGI GGATG 3 cut(s) 332, 412, 434
BseLI CCNNNNNNNGG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 328, 530
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 197
BshNI GGYRCC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 278
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 3 cut(s) 195, 197, 531
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 350
BspMI ACCTGC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 348
BsrI ACTGG 2 cut(s) 328, 530
BssECI CCNNGG 3 cut(s) 195, 396, 486
BssT1I CCWWGG 2 cut(s) 396, 486
Bst4CI ACNGT 3 cut(s) 152, 236, 386
BstC8I GCNNGC 3 cut(s) 191, 195, 506
BstDEI CTNAG 1 cut(s) 535
BstDSI CCRYGG 2 cut(s) 195, 396
BstEII GGTNACC 1 cut(s) 391
BstF5I GGATG 3 cut(s) 332, 412, 434
BstFNI CGCG 1 cut(s) 197
BstMAI GTCTC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNSI RCATGY 2 cut(s) 189, 512
BstPI GGTNACC 1 cut(s) 391
BstSCI CCNGG 1 cut(s) 160
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 270
BstXI CCANNNNNNTGG 1 cut(s) 403
BtgI CCRYGG 2 cut(s) 195, 396
BtsCI GGATG 3 cut(s) 332, 412, 434
BtsIMutI CAGTG 2 cut(s) 321, 391
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 3 cut(s) 191, 195, 506
Cfr42I CCGCGG 1 cut(s) 198
Csp6I GTAC 2 cut(s) 172, 331
CviAII CATG 5 cut(s) 186, 397, 443, 509, 546
CviJI RGCY 6 cut(s) 9, 71, 261, 491, 504, 534
CviKI_1 RGCY 6 cut(s) 9, 71, 261, 491, 504, 534
CviQI GTAC 2 cut(s) 172, 331
DdeI CTNAG 1 cut(s) 535
DraIII CACNNNGTG 1 cut(s) 388
Eco130I CCWWGG 2 cut(s) 396, 486
Eco32I GATATC 1 cut(s) 541
Eco91I GGTNACC 1 cut(s) 391
EcoO65I GGTNACC 1 cut(s) 391
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 2 cut(s) 396, 486
ErhI CCWWGG 2 cut(s) 396, 486
FaeI CATG 5 cut(s) 189, 400, 446, 512, 549
FaiI YATR 7 cut(s) 41, 187, 354, 398, 444, 510, 547
FatI CATG 5 cut(s) 185, 396, 442, 508, 545
FauI CCCGC 1 cut(s) 202
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 259, 532
FokI GGATG 3 cut(s) 339, 419, 441
Fsp4HI GCNGC 2 cut(s) 259, 532
FspBI CTAG 1 cut(s) 423
GluI GCNGC 2 cut(s) 259, 532
HapII CCGG 1 cut(s) 161
Hin1II CATG 5 cut(s) 189, 400, 446, 512, 549
HinfI GANTC 3 cut(s) 23, 416, 554
HpaII CCGG 1 cut(s) 161
HphI GGTGA 2 cut(s) 263, 403
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 2 cut(s) 18, 120
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 4 cut(s) 126, 272, 339, 494
HpyCH4III ACNGT 3 cut(s) 152, 236, 386
HpyCH4V TGCA 2 cut(s) 437, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 1 cut(s) 535
Hsp92II CATG 5 cut(s) 189, 400, 446, 512, 549
KspI CCGCGG 1 cut(s) 198
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 7 cut(s) 105, 159, 174, 189, 231, 309, 511
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 4 cut(s) 128, 380, 391, 413
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 366
MlyI GAGTC 3 cut(s) 32, 410, 548
MnlI CCTC 7 cut(s) 95, 127, 233, 235, 335, 465, 493
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 2 cut(s) 271, 401
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 278
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 396
NlaIII CATG 5 cut(s) 189, 400, 446, 512, 549
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 3 cut(s) 380, 391, 413
NspI RCATGY 2 cut(s) 189, 512
PaqCI CACCTGC 1 cut(s) 236
PctI GAATGC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 327
PkrI GCNGC 2 cut(s) 260, 533
PleI GAGTC 3 cut(s) 31, 410, 548
PpsI GAGTC 3 cut(s) 31, 410, 548
PspEI GGTNACC 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 350
RsaI GTAC 2 cut(s) 173, 332
RsaNI GTAC 2 cut(s) 172, 331
RseI CAYNNNNRTG 2 cut(s) 271, 401
SacII CCGCGG 1 cut(s) 198
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 2 cut(s) 259, 532
SchI GAGTC 3 cut(s) 32, 410, 548
ScrFI CCNGG 1 cut(s) 162
SetI ASST 7 cut(s) 11, 73, 225, 250, 350, 453, 457
SfaNI GCATC 1 cut(s) 424
Sfr303I CCGCGG 1 cut(s) 198
SgrBI CCGCGG 1 cut(s) 198
SmiMI CAYNNNNRTG 2 cut(s) 271, 401
Sse9I AATT 1 cut(s) 366
SsiI CCGC 3 cut(s) 195, 197, 531
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 2 cut(s) 396, 486
TaaI ACNGT 3 cut(s) 152, 236, 386
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 366
TauI GCSGC 1 cut(s) 534
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 328, 391
TseFI GTSAC 3 cut(s) 380, 391, 413
TseI GCWGC 1 cut(s) 258
Tsp45I GTSAC 3 cut(s) 380, 391, 413
TspDTI ATGAA 2 cut(s) 17, 423
TspRI CASTG 2 cut(s) 328, 391
Van91I CCANNNNNTGG 1 cut(s) 327
XceI RCATGY 2 cut(s) 189, 512
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.