Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009836

Physical Location & Seq

Genomic Coordinates Forward (+)

12568745 .. 12572941

Gene Structure 4197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTCAATCTTATGTGGGCTTCCCATCCTTGAGTCTGTATACTGTCTGGCGTGTGCTCGTTGGGTGTGGTTGAAATGCCTTTACACGGCAGGCCGTGAGAGCGAAAACTGGGGTCTAGCCACTGCTGAAGAGTTTGAGCCCATCCCTCACTATTGCCGCCTAATTTTATCTGTTTATGAGGATGATCTCCGTAACCCAATGTTTCCACCTCCTGGAGGGTATGGCATTGATCCTGATTGGGTAGTCTTACGTAAAGACTATGAGGAAACACTTGGCCGAGTTCCTCCTTACATTGTCTATCTTGATCATGATCATTCTGATATAGTCTTGGTAGTTAGGGGACTCAATATGGCCAAGGAAAGTGATTTTCTAGTTATGCTTGATAACAAACTTGGGCAGACAAAATTTGATGGTGGATATGTCCACAATGGGTTAATGAAGGCAGCAGAGTGGCTGTTTGATACAGAGTGTGAGTTTTTGAGGGAATTGGTATTGAAAAATCCGAACTATACCCTGACATTTATTGGACATTCCCTGGGCTCTGGTGTGGTGGCATTGCTGACTCTGGTAGCGCTTCAGAACAGGAGCAAATTGGGAATTGTTGAGAGGAAAATGATTAGATGTTATGCCACAGCTCCGGCTAGATGTATGTCATTGAATTTGGCCGTGAGATATGCAGATGTTATCAATTCTATTGTACTCCAGGACGATTTCTTACCTCGGACAGCAACTTCTTTATCGGATTTATTCAGATCACTTTTCTGTTTGCCATGTGTACTGTGTGTAACGTGCTTGAAGGATACATGCACACTGGAAGAAAGGATGTTCACAGATCCAAGGAGACTCTATGCACCTGGTAGGCTCTATCACATTGTTGATCGGAAGCCCTTCAGAATAGGAAGGTTACCCCCAGTTGTGAGAACAGCAGTGCCTGTCGATGGGAGGTTTGAGCATGTAGTTCTTTCGTGCCATGCTACTACTGACCATGCAATTGTCTGGATTGAGAGAGAATCACAAAAGGCTCTTAATATAATGATGGAAAGAGATCGAATGATGGATGTGCCGGCAAAGCAGAGAATGGAGAGAAAAGAGTCCCTTGTTCGTGAACACAGCCTGGAGCATGAGGCAGCACTTCGAAAAGCTGTAGCTTTGGATGTCCCTCATGCCTTCTCTACTTCACCATACGGAACATTTACATTGATTGAAACGGAAGAGGCGGAGAACTCTGGCAAATCTAGTGGGGGAAGTCCCTCAGCGCCACTAAAGCACAGGAGTGAAAGCTTGGATGATTTCGTAGAACGGCTATTTCATGTGGATGAAGCTGGTAACATCATGGTCAAAAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

450

Amino Acids

50.89

Weight (kDa)

5.99

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	10 - 75	7.1e-20	Lipase 3 N-terminal region
Lipase_3	PF01764	109 - 244	5.3e-23	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00500 AT4G00500
fragaria_vesca	FvH4_7g14200 FvH4_7g14200 FvH4_7g14200
malus_domestica	MD01G1059200.v1.1
prunus_persica	Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1
pyrus_communis	pycom01g08820
rosa_chinensis	RchiOBHm_Chr1g0355131
rosa_laevigata	RLG00000028175
rosa_multiflora	Rmu_sc0003115.1_g000035 Rmu_sc0004488.1_g000007
rosa_roxburghii	Rroxscaffold_4G00300650
rosa_rugosa	Rorug01G0245300
rosa_samantha	Rh1AG257600 Rh1BG227100 Rh1CG241200 Rh1DG254800
rosa_wichuraiana	Rw1G022730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	2 cut(s)	157, 1217
AclWI	GGATC	2 cut(s)	224, 827
AcoI	YGGCCR	3 cut(s)	274, 351, 663
AcsI	RAATTY	2 cut(s)	404, 658
AcuI	CTGAAG	3 cut(s)	147, 560, 874
AfaI	GTAC	2 cut(s)	699, 777
AfeI	AGCGCT	1 cut(s)	573
AfiI	CCNNNNNNNGG	4 cut(s)	85, 212, 215, 938
AgsI	TTSAA	5 cut(s)	73, 496, 658, 796, 1205
AjnI	CCWGG	5 cut(s)	211, 534, 702, 853, 1113
AleI	CACNNNNGTG	1 cut(s)	1272
AluBI	AGCT	5 cut(s)	635, 1142, 1148, 1281, 1322
AluI	AGCT	5 cut(s)	635, 1142, 1148, 1281, 1322
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	835
AlwI	GGATC	2 cut(s)	224, 827
AlwNI	CAGNNNCTG	1 cut(s)	932
Aor51HI	AGCGCT	1 cut(s)	573
AoxI	GGCC	4 cut(s)	91, 274, 351, 663
ApeKI	GCWGC	2 cut(s)	443, 1127
ApoI	RAATTY	2 cut(s)	404, 658
Asp700I	GAANNNNTTC	1 cut(s)	887
AspLEI	GCGC	2 cut(s)	574, 1258
AsuHPI	GGTGA	1 cut(s)	1170
AsuII	TTCGAA	1 cut(s)	1135
BalI	TGGCCA	1 cut(s)	353
BanII	GRGCYC	2 cut(s)	141, 542
Bbv12I	GWGCWC	1 cut(s)	58
BbvCI	CCTCAGC	1 cut(s)	1252
BbvI	GCAGC	2 cut(s)	455, 1139
BccI	CCATC	6 cut(s)	32, 149, 404, 932, 1030, 1048
BceAI	ACGGC	4 cut(s)	78, 102, 650, 1316
BciT130I	CCWGG	5 cut(s)	213, 536, 704, 855, 1115
BciVI	GTATCC	1 cut(s)	793
BclI	TGATCA	2 cut(s)	304, 310
BcoDI	GTCTC	1 cut(s)	835
BfaI	CTAG	4 cut(s)	116, 371, 642, 1236
BfmI	CTRYAG	1 cut(s)	1143
BfoI	RGCGCY	2 cut(s)	575, 1259
BfuI	GTATCC	1 cut(s)	793
BisI	GCNGC	3 cut(s)	157, 444, 1128
BlsI	GCNGC	3 cut(s)	158, 445, 1129
Bme1390I	CCNGG	5 cut(s)	213, 536, 704, 855, 1115
BmrFI	CCNGG	5 cut(s)	213, 536, 704, 855, 1115
BmrI	ACTGGG	2 cut(s)	118, 905
BmuI	ACTGGG	2 cut(s)	118, 905
BpmI	CTGGAG	3 cut(s)	234, 686, 1136
Bpu10I	CCTNAGC	1 cut(s)	1252
Bpu14I	TTCGAA	1 cut(s)	1135
BpuEI	CTTGAG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	5 cut(s)	354, 534, 535, 719, 836
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 212, 215, 938
Bse118I	RCCGGY	1 cut(s)	1063
Bse1I	ACTGG	3 cut(s)	113, 816, 911
Bse3DI	GCAATG	1 cut(s)	554
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	5 cut(s)	213, 536, 704, 855, 1115
BseDI	CCNNGG	5 cut(s)	354, 534, 535, 719, 836
BseGI	GGATG	8 cut(s)	24, 141, 187, 828, 1063, 1159, 1291, 1321
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	4 cut(s)	85, 212, 215, 938
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	1 cut(s)	1266
BseNI	ACTGG	3 cut(s)	113, 816, 911
BseXI	GCAGC	2 cut(s)	455, 1139
BshFI	GGCC	4 cut(s)	93, 276, 353, 665
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	638, 1064
BslFI	GGGAC	4 cut(s)	354, 1078, 1142, 1233
BslI	CCNNNNNNNGG	4 cut(s)	85, 212, 215, 938
BsmAI	GTCTC	1 cut(s)	835
BsmFI	GGGAC	4 cut(s)	354, 1078, 1142, 1233
BsnI	GGCC	4 cut(s)	93, 276, 353, 665
Bsp119I	TTCGAA	1 cut(s)	1135
Bsp1286I	GDGCHC	3 cut(s)	58, 141, 542
Bsp143I	GATC	8 cut(s)	184, 229, 304, 310, 752, 832, 877, 1045
BspACI	CCGC	2 cut(s)	157, 1217
BspANI	GGCC	4 cut(s)	93, 276, 353, 665
BspCNI	CTCAG	1 cut(s)	1265
BspHI	TCATGA	1 cut(s)	307
BspPI	GGATC	2 cut(s)	224, 827
BspT104I	TTCGAA	1 cut(s)	1135
BsrDI	GCAATG	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	1063
BsrI	ACTGG	3 cut(s)	113, 816, 911
BssAI	RCCGGY	1 cut(s)	1063
BssECI	CCNNGG	5 cut(s)	354, 534, 535, 719, 836
BssMI	GATC	8 cut(s)	184, 229, 304, 310, 752, 832, 877, 1045
BssNAI	GTATAC	1 cut(s)	40
BssT1I	CCWWGG	2 cut(s)	354, 836
Bst1107I	GTATAC	1 cut(s)	40
Bst2UI	CCWGG	5 cut(s)	213, 536, 704, 855, 1115
Bst4CI	ACNGT	2 cut(s)	44, 780
Bst6I	CTCTTC	2 cut(s)	123, 1206
BstBAI	YACGTR	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	1135
BstC8I	GCNNGC	2 cut(s)	91, 1065
BstDEI	CTNAG	1 cut(s)	1252
BstEII	GGTNACC	1 cut(s)	903
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	8 cut(s)	24, 141, 187, 828, 1063, 1159, 1291, 1321
BstH2I	RGCGCY	2 cut(s)	575, 1259
BstHHI	GCGC	2 cut(s)	574, 1258
BstKTI	GATC	8 cut(s)	187, 232, 307, 313, 755, 835, 880, 1048
BstMAI	GTCTC	1 cut(s)	835
BstMBI	GATC	8 cut(s)	184, 229, 304, 310, 752, 832, 877, 1045
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 1069, 1264
BstNI	CCWGG	5 cut(s)	213, 536, 704, 855, 1115
BstNSI	RCATGY	2 cut(s)	807, 956
BstPI	GGTNACC	1 cut(s)	903
BstSCI	CCNGG	5 cut(s)	211, 534, 702, 853, 1113
BstSFI	CTRYAG	1 cut(s)	1143
BstSNI	TACGTA	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	455, 1139
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BstZ17I	GTATAC	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	4 cut(s)	93, 276, 353, 665
BtsCI	GGATG	8 cut(s)	24, 141, 187, 828, 1063, 1159, 1291, 1321
BtsI	GCAGTG	2 cut(s)	120, 933
BtsIMutI	CAGTG	3 cut(s)	120, 809, 933
Cac8I	GCNNGC	2 cut(s)	91, 1065
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	2 cut(s)	574, 1258
Cfr10I	RCCGGY	1 cut(s)	1063
CsiI	ACCWGGT	1 cut(s)	853
Csp6I	GTAC	2 cut(s)	698, 776
CspCI	CAANNNNNGTGG	2 cut(s)	1219, 1254
CviQI	GTAC	2 cut(s)	698, 776
DdeI	CTNAG	1 cut(s)	1252
DpnI	GATC	8 cut(s)	186, 231, 306, 312, 754, 834, 879, 1047
DpnII	GATC	8 cut(s)	184, 229, 304, 310, 752, 832, 877, 1045
EaeI	YGGCCR	3 cut(s)	274, 351, 663
Eam1104I	CTCTTC	2 cut(s)	123, 1206
EarI	CTCTTC	2 cut(s)	123, 1206
EciI	GGCGGA	1 cut(s)	1232
Eco105I	TACGTA	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	354, 836
Eco24I	GRGCYC	2 cut(s)	141, 542
Eco47III	AGCGCT	1 cut(s)	573
Eco57I	CTGAAG	3 cut(s)	147, 560, 874
Eco91I	GGTNACC	1 cut(s)	903
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	903
EcoRII	CCWGG	5 cut(s)	211, 534, 702, 853, 1113
EcoT14I	CCWWGG	2 cut(s)	354, 836
EcoT38I	GRGCYC	2 cut(s)	141, 542
ErhI	CCWWGG	2 cut(s)	354, 836
FalI	AAGNNNNNCTT	2 cut(s)	1080, 1112
FaqI	GGGAC	4 cut(s)	354, 1078, 1142, 1233
FbaI	TGATCA	2 cut(s)	304, 310
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	157, 444, 1128
FokI	GGATG	8 cut(s)	11, 128, 194, 835, 1070, 1166, 1298, 1328
FriOI	GRGCYC	2 cut(s)	141, 542
Fsp4HI	GCNGC	3 cut(s)	157, 444, 1128
FspBI	CTAG	4 cut(s)	116, 371, 642, 1236
GlaI	GCGC	2 cut(s)	573, 1257
GluI	GCNGC	3 cut(s)	157, 444, 1128
GsuI	CTGGAG	3 cut(s)	234, 686, 1136
HaeII	RGCGCY	2 cut(s)	575, 1259
HaeIII	GGCC	4 cut(s)	93, 276, 353, 665
HapII	CCGG	2 cut(s)	638, 1064
HhaI	GCGC	2 cut(s)	574, 1258
Hin6I	GCGC	2 cut(s)	572, 1256
HinP1I	GCGC	2 cut(s)	572, 1256
HindIII	AAGCTT	1 cut(s)	1279
HinfI	GANTC	6 cut(s)	32, 342, 562, 843, 1010, 1091
HpaII	CCGG	2 cut(s)	638, 1064
HphI	GGTGA	1 cut(s)	1170
Hpy166II	GTNNAC	5 cut(s)	40, 424, 776, 828, 1106
Hpy188I	TCNGA	8 cut(s)	319, 504, 579, 723, 742, 752, 882, 893
Hpy188III	TCNNGA	5 cut(s)	233, 302, 308, 997, 1103
Hpy8I	GTNNAC	5 cut(s)	40, 424, 776, 828, 1106
HpyAV	CCTTC	5 cut(s)	433, 790, 894, 898, 1177
HpyCH4III	ACNGT	2 cut(s)	44, 780
HpyCH4IV	ACGT	2 cut(s)	250, 788
HpyCH4V	TGCA	4 cut(s)	677, 807, 851, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 1069, 1264
HpyF3I	CTNAG	1 cut(s)	1252
HpySE526I	ACGT	2 cut(s)	250, 788
HspAI	GCGC	2 cut(s)	572, 1256
KroI	GCCGGC	1 cut(s)	1063
KroNI	GCCGGC	1 cut(s)	1065
Ksp22I	TGATCA	2 cut(s)	304, 310
Kzo9I	GATC	8 cut(s)	184, 229, 304, 310, 752, 832, 877, 1045
LmnI	GCTCC	3 cut(s)	585, 640, 1117
Lsp1109I	GCAGC	2 cut(s)	455, 1139
MabI	ACCWGGT	1 cut(s)	853
MaeI	CTAG	4 cut(s)	116, 371, 642, 1236
MaeII	ACGT	2 cut(s)	250, 788
MaeIII	GTNAC	4 cut(s)	191, 784, 903, 1325
MalI	GATC	8 cut(s)	186, 231, 306, 312, 754, 834, 879, 1047
MboI	GATC	8 cut(s)	184, 229, 304, 310, 752, 832, 877, 1045
MboII	GAAGA	3 cut(s)	140, 827, 1223
MfeI	CAATTG	1 cut(s)	990
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	3 cut(s)	58, 141, 542
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	8 cut(s)	162, 404, 485, 590, 597, 658, 688, 990
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	5 cut(s)	41, 336, 556, 837, 1100
Mox20I	TGGCCA	1 cut(s)	353
MroNI	GCCGGC	1 cut(s)	1063
MroXI	GAANNNNTTC	1 cut(s)	887
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	2 cut(s)	434, 1026
MslI	CAYNNNNRTG	2 cut(s)	1272, 1314
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	2 cut(s)	638, 1064
MspR9I	CCNGG	5 cut(s)	213, 536, 704, 855, 1115
MunI	CAATTG	1 cut(s)	990
MvaI	CCWGG	5 cut(s)	213, 536, 704, 855, 1115
MwoI	GCNNNNNNNGC	3 cut(s)	99, 1069, 1264
NaeI	GCCGGC	1 cut(s)	1065
NdeII	GATC	8 cut(s)	184, 229, 304, 310, 752, 832, 877, 1045
NgoMIV	GCCGGC	1 cut(s)	1063
NmeAIII	GCCGAG	1 cut(s)	302
NspI	RCATGY	2 cut(s)	807, 956
NspV	TTCGAA	1 cut(s)	1135
OliI	CACNNNNGTG	1 cut(s)	1272
PagI	TCATGA	1 cut(s)	307
PasI	CCCWGGG	1 cut(s)	535
PdiI	GCCGGC	1 cut(s)	1065
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	1 cut(s)	1010
PflMI	CCANNNNNTGG	1 cut(s)	212
PfoI	TCCNGGA	2 cut(s)	211, 702
PkrI	GCNGC	3 cut(s)	158, 445, 1129
PleI	GAGTC	5 cut(s)	40, 336, 556, 837, 1099
PpsI	GAGTC	5 cut(s)	40, 336, 556, 837, 1099
Ppu21I	YACGTR	1 cut(s)	251
Psp6I	CCWGG	5 cut(s)	211, 534, 702, 853, 1113
PspEI	GGTNACC	1 cut(s)	903
PspGI	CCWGG	5 cut(s)	211, 534, 702, 853, 1113
PstNI	CAGNNNCTG	1 cut(s)	932
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	2 cut(s)	699, 777
RsaNI	GTAC	2 cut(s)	698, 776
RseI	CAYNNNNRTG	2 cut(s)	1272, 1314
SaqAI	TTAA	2 cut(s)	434, 1026
SatI	GCNGC	3 cut(s)	157, 444, 1128
Sau3AI	GATC	8 cut(s)	184, 229, 304, 310, 752, 832, 877, 1045
SchI	GAGTC	5 cut(s)	41, 336, 556, 837, 1100
ScrFI	CCNGG	5 cut(s)	213, 536, 704, 855, 1115
SduI	GDGCHC	3 cut(s)	58, 141, 542
SexAI	ACCWGGT	1 cut(s)	853
SfcI	CTRYAG	1 cut(s)	1143
SfuI	TTCGAA	1 cut(s)	1135
SmiMI	CAYNNNNRTG	2 cut(s)	1272, 1314
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SnaBI	TACGTA	1 cut(s)	251
Sse9I	AATT	8 cut(s)	162, 404, 485, 590, 597, 658, 688, 990
SsiI	CCGC	2 cut(s)	157, 1217
SspMI	CTAG	4 cut(s)	116, 371, 642, 1236
StyD4I	CCNGG	5 cut(s)	211, 534, 702, 853, 1113
StyI	CCWWGG	2 cut(s)	354, 836
TaaI	ACNGT	2 cut(s)	44, 780
TaiI	ACGT	2 cut(s)	253, 791
TaqI	TCGA	3 cut(s)	936, 1048, 1135
TasI	AATT	8 cut(s)	162, 404, 485, 590, 597, 658, 688, 990
TatI	WGTACW	2 cut(s)	697, 775
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	1010
Tru1I	TTAA	2 cut(s)	434, 1026
Tru9I	TTAA	2 cut(s)	434, 1026
TscAI	CASTG	3 cut(s)	127, 816, 933
TseI	GCWGC	2 cut(s)	443, 1127
TspDTI	ATGAA	3 cut(s)	452, 1298, 1332
TspGWI	ACGGA	3 cut(s)	179, 1200, 1223
TspRI	CASTG	3 cut(s)	127, 816, 933
Van91I	CCANNNNNTGG	1 cut(s)	212
XagI	CCTNNNNNAGG	1 cut(s)	213
XapI	RAATTY	2 cut(s)	404, 658
XceI	RCATGY	2 cut(s)	807, 956
XmiI	GTMKAC	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	4 cut(s)	116, 371, 642, 1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.