Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009836

Physical Location & Seq

Genomic Coordinates Forward (+)

16300630 .. 16303981

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1059200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGCATATTGGAAGCTCATGCACTTTGAGCTTTAATACATCTGTTGAACTGTGCCAACCCAATGCGGCGTCCATGTCAATCTGCTGTGGGATTCCTATCCTTGAGTCTGTATACTGTCTGGCATGTGCCCGTTGGGTGTGGCTGAAATGCCTCTACACAGCAGGGCGTGAAAGTGAAAACTGGGGTCTGGCTACTGCTGAAGAATTTGAGCCTATCCCTCGTTTTTGTCGCCTAATTCTAGCCGTCTATGAGGAAGATCTTCGTAATCCTCTTTGGGCACCCCCCGGAGGTTATGGCCTTAATCCTGATTGGGTTATCTTACGGAAAGACTATGAAGAAACCCTTGGCCGTGTTCCTCCGTACTTTATATATCTTGATCACGATCATTCTGATATAGTCTTAGCAGTTAGGGGACTCAATTTAGCTAAGGAAAATGATTATGCAGTTATGCTTGACAACAAACTTGGGCAGACAAAATTTGACGGTGGGTATGTCCACAATGGGCTGTTGAAGGCAGCAGAGTGGTTGTTTGATGCAGAGCATGAAATATTGAGGGAATTGGTAATGAAACATCCGAATTATACTGTGACATTTACTGGACATTCCCTTGGGGCTGGTGTGGTGGCATTGATGACGCTAGTGGCGCTTCAGAATCTGACTAAATTAGGAACTGAGAGGAAGAAGATTAGATGCTATGCTACGGCTCCTGCTAGATGCATGTCACTGAATCTGGCTGTGAGGTATGCAGATGTTATCAACTCTGTTGTACTTCAGGATGATTTCTTACCTCGGATAACAACTGCTTTGGATAACTTGTTCAAATCACTTTTCTGTTTGCCATGTTTTCTTTGCACAATGTGCTTGAAGGAGACGTGCACACTGGAACAGAAGATGCTTACTGATCCAAAGAGATTATATGCACCTGGCCGTCTCTATCACATTGTTGAACGAAAGCCCTTCAGATTTGAAAGGTTTCCGCCAGTGGTGAAAACAGCGGTTCCTGTGGATGGGCGGTTTGAGCACATAGTTCTTTCTTGCAATGTTACTTCTGACCATGCCATAGTTTGGATAGAGAGAGAAGCACAAAAGGCTTTTGATTTAATGGTTGAGAAAGACAAAATTATGGAAGTTCCAGCAAAGCAGAGGATGGAGCGACAAGTTTCCCTTGTTCGTGAACACAGCCAGGAGCACAAGGCAGCTCTTAGGAGAGCTGTAGCTTTGAATATCCCTCATGCCTACTCTGATTCGCAGTATGGAACATTTGCATTCGTTGAAACTTTAGAGGGGAAGAATTCTGGAGGATCGAGTGGGGGAACTCCTTGTAAGGCATCATTCAAGATAAGGAGGGAAAGCTGGGATAATTTCGTAGAGCGGCTTTTCGATGTTGATGAGTCCGGTGACATGGTGTTCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

473

Amino Acids

53.48

Weight (kDa)

6.51

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	34 - 99	7.8e-21	Lipase 3 N-terminal region
Lipase_3	PF01764	133 - 267	6.5e-26	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00500 AT4G00500
fragaria_vesca	FvH4_7g14200 FvH4_7g14200 FvH4_7g14200
malus_domestica	MD01G1059200.v1.1
prunus_persica	Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1
pyrus_communis	pycom01g08820
rosa_chinensis	RchiOBHm_Chr1g0355131
rosa_laevigata	RLG00000028175
rosa_multiflora	Rmu_sc0003115.1_g000035 Rmu_sc0004488.1_g000007
rosa_roxburghii	Rroxscaffold_4G00300650
rosa_rugosa	Rorug01G0245300
rosa_samantha	Rh1AG257600 Rh1BG227100 Rh1CG241200 Rh1DG254800
rosa_wichuraiana	Rw1G022730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	1065
AccBSI	CCGCTC	1 cut(s)	1372
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	5 cut(s)	65, 977, 995, 1012, 1372
AclWI	GGATC	2 cut(s)	896, 1309
AcoI	YGGCCR	2 cut(s)	346, 925
AcsI	RAATTY	3 cut(s)	203, 476, 1291
AcuI	CTGAAG	4 cut(s)	219, 632, 755, 943
AcyI	GRCGYC	1 cut(s)	68
AdeI	CACNNNGTG	1 cut(s)	858
AfaI	GTAC	2 cut(s)	362, 768
AfiI	CCNNNNNNNGG	3 cut(s)	287, 1007, 1065
AjiI	CACGTC	1 cut(s)	873
AjnI	CCWGG	2 cut(s)	922, 1182
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AloI	GAACNNNNNNTCC	2 cut(s)	800, 832
AluBI	AGCT	7 cut(s)	15, 30, 425, 1199, 1211, 1217, 1353
AluI	AGCT	7 cut(s)	15, 30, 425, 1199, 1211, 1217, 1353
Alw21I	GWGCWC	3 cut(s)	878, 1023, 1191
Alw26I	GTCTC	2 cut(s)	863, 935
Alw44I	GTGCAC	1 cut(s)	874
AlwI	GGATC	2 cut(s)	896, 1309
AlwNI	CAGNNNCTG	1 cut(s)	655
AoxI	GGCC	3 cut(s)	295, 346, 925
ApaLI	GTGCAC	1 cut(s)	874
ApeKI	GCWGC	2 cut(s)	515, 1196
ApoI	RAATTY	3 cut(s)	203, 476, 1291
Asp700I	GAANNNNTTC	2 cut(s)	258, 972
AspLEI	GCGC	1 cut(s)	646
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	997, 1409
BaeGI	GKGCMC	3 cut(s)	130, 280, 878
BanI	GGYRCC	1 cut(s)	277
Bbv12I	GWGCWC	3 cut(s)	878, 1023, 1191
BbvI	GCAGC	2 cut(s)	527, 1208
BccI	CCATC	2 cut(s)	1001, 1141
BceAI	ACGGC	4 cut(s)	227, 333, 717, 912
BciT130I	CCWGG	2 cut(s)	924, 1184
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	863, 935
BfaI	CTAG	3 cut(s)	239, 638, 711
BfmI	CTRYAG	1 cut(s)	1212
BfoI	RGCGCY	1 cut(s)	647
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	4 cut(s)	66, 516, 1197, 1373
BlsI	GCNGC	4 cut(s)	67, 517, 1198, 1374
Bme1390I	CCNGG	3 cut(s)	285, 924, 1184
BmgBI	CACGTC	1 cut(s)	873
BmiI	GGNNCC	3 cut(s)	279, 705, 999
BmrFI	CCNGG	3 cut(s)	285, 924, 1184
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	5 cut(s)	523, 680, 704, 882, 1337
BmuI	ACTGGG	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	1317
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	285
BsaBI	GATNNNNATC	2 cut(s)	95, 381
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	4 cut(s)	283, 343, 607, 788
BsaWI	WCCGGW	1 cut(s)	1394
Bsc4I	CCNNNNNNNGG	3 cut(s)	287, 1007, 1065
Bse1I	ACTGG	4 cut(s)	185, 601, 885, 980
Bse3DI	GCAATG	1 cut(s)	1045
Bse8I	GATNNNNATC	2 cut(s)	95, 381
BseBI	CCWGG	2 cut(s)	924, 1184
BseDI	CCNNGG	4 cut(s)	283, 343, 607, 788
BseGI	GGATG	4 cut(s)	571, 781, 1012, 1152
BseJI	GATNNNNATC	2 cut(s)	95, 381
BseLI	CCNNNNNNNGG	3 cut(s)	287, 1007, 1065
BseMI	GCAATG	1 cut(s)	1045
BseMII	CTCAG	1 cut(s)	663
BseNI	ACTGG	4 cut(s)	185, 601, 885, 980
BseSI	GKGCMC	3 cut(s)	130, 280, 878
BseXI	GCAGC	2 cut(s)	527, 1208
BseYI	CCCAGC	1 cut(s)	1353
BshFI	GGCC	3 cut(s)	297, 348, 927
BshNI	GGYRCC	1 cut(s)	277
BsiHKAI	GWGCWC	3 cut(s)	878, 1023, 1191
BsiSI	CCGG	2 cut(s)	285, 1395
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	3 cut(s)	287, 1007, 1065
BsmAI	GTCTC	2 cut(s)	863, 935
BsmBI	CGTCTC	2 cut(s)	863, 935
BsmFI	GGGAC	1 cut(s)	426
BsmI	GAATGC	1 cut(s)	1265
BsnI	GGCC	3 cut(s)	297, 348, 927
Bsp1286I	GDGCHC	5 cut(s)	130, 280, 878, 1023, 1191
Bsp143I	GATC	5 cut(s)	256, 376, 382, 901, 1301
BspACI	CCGC	5 cut(s)	65, 977, 995, 1012, 1372
BspANI	GGCC	3 cut(s)	297, 348, 927
BspCNI	CTCAG	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	279, 705, 999
BspPI	GGATC	2 cut(s)	896, 1309
BspT107I	GGYRCC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	1372
BsrDI	GCAATG	1 cut(s)	1045
BsrI	ACTGG	4 cut(s)	185, 601, 885, 980
BssECI	CCNNGG	4 cut(s)	283, 343, 607, 788
BssMI	GATC	5 cut(s)	256, 376, 382, 901, 1301
BssNAI	GTATAC	1 cut(s)	112
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	2 cut(s)	343, 607
Bst1107I	GTATAC	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	924, 1184
Bst4CI	ACNGT	4 cut(s)	51, 116, 485, 586
BstACI	GRCGYC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	858
BstDEI	CTNAG	4 cut(s)	400, 426, 672, 1202
BstF5I	GGATG	4 cut(s)	571, 781, 1012, 1152
BstH2I	RGCGCY	1 cut(s)	647
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	5 cut(s)	259, 379, 385, 904, 1304
BstMAI	GTCTC	2 cut(s)	863, 935
BstMBI	GATC	5 cut(s)	256, 376, 382, 901, 1301
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 643, 858, 1018, 1088
BstNI	CCWGG	2 cut(s)	924, 1184
BstNSI	RCATGY	2 cut(s)	126, 721
BstSCI	CCNGG	3 cut(s)	283, 922, 1182
BstSFI	CTRYAG	1 cut(s)	1212
BstSLI	GKGCMC	3 cut(s)	130, 280, 878
BstV1I	GCAGC	2 cut(s)	527, 1208
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZ17I	GTATAC	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	297, 348, 927
BtrI	CACGTC	1 cut(s)	873
BtsCI	GGATG	4 cut(s)	571, 781, 1012, 1152
BtsIMutI	CAGTG	3 cut(s)	722, 878, 987
CaiI	CAGNNNCTG	1 cut(s)	655
CfoI	GCGC	1 cut(s)	646
CseI	GACGC	2 cut(s)	57, 643
Csp6I	GTAC	2 cut(s)	361, 767
CviAII	CATG	9 cut(s)	18, 73, 123, 542, 718, 840, 1055, 1232, 1402
CviQI	GTAC	2 cut(s)	361, 767
DdeI	CTNAG	4 cut(s)	400, 426, 672, 1202
DpnI	GATC	5 cut(s)	258, 378, 384, 903, 1303
DpnII	GATC	5 cut(s)	256, 376, 382, 901, 1301
DraIII	CACNNNGTG	1 cut(s)	858
EaeI	YGGCCR	2 cut(s)	346, 925
EciI	GGCGGA	1 cut(s)	966
Eco130I	CCWWGG	2 cut(s)	343, 607
Eco57I	CTGAAG	4 cut(s)	219, 632, 755, 943
EcoRI	GAATTC	1 cut(s)	1291
EcoRII	CCWGG	2 cut(s)	922, 1182
EcoT14I	CCWWGG	2 cut(s)	343, 607
EcoT22I	ATGCAT	2 cut(s)	6, 719
ErhI	CCWWGG	2 cut(s)	343, 607
Esp3I	CGTCTC	2 cut(s)	863, 935
FaeI	CATG	9 cut(s)	21, 76, 126, 545, 721, 843, 1058, 1235, 1405
FalI	AAGNNNNNCTT	4 cut(s)	327, 359, 1149, 1181
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	9 cut(s)	17, 72, 122, 541, 717, 839, 1054, 1231, 1401
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	4 cut(s)	66, 516, 1197, 1373
FokI	GGATG	4 cut(s)	558, 788, 1019, 1159
Fsp4HI	GCNGC	4 cut(s)	66, 516, 1197, 1373
FspBI	CTAG	3 cut(s)	239, 638, 711
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	4 cut(s)	66, 516, 1197, 1373
GsaI	CCCAGC	1 cut(s)	1357
GsuI	CTGGAG	1 cut(s)	1317
HaeII	RGCGCY	1 cut(s)	647
HaeIII	GGCC	3 cut(s)	297, 348, 927
HapII	CCGG	2 cut(s)	285, 1395
HgaI	GACGC	2 cut(s)	57, 643
HhaI	GCGC	1 cut(s)	646
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	9 cut(s)	21, 76, 126, 545, 721, 843, 1058, 1235, 1405
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HinfI	GANTC	7 cut(s)	91, 104, 414, 652, 727, 1244, 1391
HpaII	CCGG	2 cut(s)	285, 1395
HphI	GGTGA	2 cut(s)	997, 1409
Hpy166II	GTNNAC	4 cut(s)	112, 496, 876, 1175
Hpy188I	TCNGA	8 cut(s)	391, 576, 651, 657, 792, 962, 1051, 1243
Hpy188III	TCNNGA	8 cut(s)	305, 374, 380, 773, 1172, 1296, 1336, 1411
Hpy8I	GTNNAC	4 cut(s)	112, 496, 876, 1175
HpyAV	CCTTC	3 cut(s)	505, 859, 967
HpyCH4III	ACNGT	4 cut(s)	51, 116, 485, 586
HpyCH4IV	ACGT	1 cut(s)	872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 643, 858, 1018, 1088
HpyF3I	CTNAG	4 cut(s)	400, 426, 672, 1202
HpySE526I	ACGT	1 cut(s)	872
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	9 cut(s)	21, 76, 126, 545, 721, 843, 1058, 1235, 1405
HspAI	GCGC	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	256, 376, 382, 901, 1301
LmnI	GCTCC	3 cut(s)	709, 1150, 1186
Lsp1109I	GCAGC	2 cut(s)	527, 1208
LweI	GCATC	5 cut(s)	523, 680, 704, 882, 1337
MaeI	CTAG	3 cut(s)	239, 638, 711
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	4 cut(s)	586, 720, 1042, 1397
MalI	GATC	5 cut(s)	258, 378, 384, 903, 1303
MbiI	CCGCTC	1 cut(s)	1372
MboI	GATC	5 cut(s)	256, 376, 382, 901, 1301
MboII	GAAGA	8 cut(s)	212, 251, 266, 347, 691, 694, 901, 1300
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	5 cut(s)	130, 280, 878, 1023, 1191
MlyI	GAGTC	3 cut(s)	113, 408, 1400
Mph1103I	ATGCAT	2 cut(s)	6, 719
MroXI	GAANNNNTTC	2 cut(s)	258, 972
MseI	TTAA	3 cut(s)	33, 300, 1100
MspA1I	CMGCKG	1 cut(s)	995
MspI	CCGG	2 cut(s)	285, 1395
MspR9I	CCNGG	3 cut(s)	285, 924, 1184
Mva1269I	GAATGC	1 cut(s)	1265
MvaI	CCWGG	2 cut(s)	924, 1184
MwoI	GCNNNNNNNGC	5 cut(s)	27, 643, 858, 1018, 1088
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	5 cut(s)	256, 376, 382, 901, 1301
NlaIII	CATG	9 cut(s)	21, 76, 126, 545, 721, 843, 1058, 1235, 1405
NlaIV	GGNNCC	3 cut(s)	279, 705, 999
NmuCI	GTSAC	3 cut(s)	586, 720, 1397
NsiI	ATGCAT	2 cut(s)	6, 719
NspI	RCATGY	2 cut(s)	126, 721
PctI	GAATGC	1 cut(s)	1265
PdmI	GAANNNNTTC	2 cut(s)	258, 972
PfeI	GAWTC	4 cut(s)	91, 652, 727, 1244
PflMI	CCANNNNNTGG	1 cut(s)	1065
PkrI	GCNGC	4 cut(s)	67, 517, 1198, 1374
PleI	GAGTC	3 cut(s)	112, 408, 1399
PpsI	GAGTC	3 cut(s)	112, 408, 1399
Psp6I	CCWGG	2 cut(s)	922, 1182
PspFI	CCCAGC	1 cut(s)	1353
PspGI	CCWGG	2 cut(s)	922, 1182
PspN4I	GGNNCC	3 cut(s)	279, 705, 999
PstNI	CAGNNNCTG	1 cut(s)	655
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	362, 768
RsaNI	GTAC	2 cut(s)	361, 767
SaqAI	TTAA	3 cut(s)	33, 300, 1100
SatI	GCNGC	4 cut(s)	66, 516, 1197, 1373
Sau3AI	GATC	5 cut(s)	256, 376, 382, 901, 1301
SchI	GAGTC	3 cut(s)	113, 408, 1400
ScrFI	CCNGG	3 cut(s)	285, 924, 1184
SduI	GDGCHC	5 cut(s)	130, 280, 878, 1023, 1191
SfaNI	GCATC	5 cut(s)	523, 680, 704, 882, 1337
SfcI	CTRYAG	1 cut(s)	1212
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SsiI	CCGC	5 cut(s)	65, 977, 995, 1012, 1372
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	3 cut(s)	239, 638, 711
StyD4I	CCNGG	3 cut(s)	283, 922, 1182
StyI	CCWWGG	2 cut(s)	343, 607
TaaI	ACNGT	4 cut(s)	51, 116, 485, 586
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	2 cut(s)	1304, 1380
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	2 cut(s)	68, 1375
TfiI	GAWTC	4 cut(s)	91, 652, 727, 1244
Tru1I	TTAA	3 cut(s)	33, 300, 1100
Tru9I	TTAA	3 cut(s)	33, 300, 1100
TscAI	CASTG	3 cut(s)	729, 885, 987
TseFI	GTSAC	3 cut(s)	586, 720, 1397
TseI	GCWGC	2 cut(s)	515, 1196
Tsp45I	GTSAC	3 cut(s)	586, 720, 1397
TspDTI	ATGAA	3 cut(s)	348, 558, 581
TspGWI	ACGGA	2 cut(s)	337, 348
TspRI	CASTG	3 cut(s)	729, 885, 987
Van91I	CCANNNNNTGG	1 cut(s)	1065
VneI	GTGCAC	1 cut(s)	874
XapI	RAATTY	3 cut(s)	203, 476, 1291
XceI	RCATGY	2 cut(s)	126, 721
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	2 cut(s)	258, 972
XspI	CTAG	3 cut(s)	239, 638, 711
Zsp2I	ATGCAT	2 cut(s)	6, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.